BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00029690
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,...   128   4e-28
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi...   123   1e-26
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi...   123   1e-26
ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arab...   121   5e-26

>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  145 bits (367), Expect = 3e-33
 Identities = 63/105 (60%), Positives = 84/105 (80%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           PDEFL PKILQACGN GD  TG LIH++V +CG++ +IRV NSIL+ YAKCG L   R++
Sbjct: 183 PDEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRF 242

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F+NM+ +D V+WNS+I GYCQK E+ ++H+LF+ M +E +EPGLV
Sbjct: 243 FENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLV 287



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 37/96 (38%), Positives = 59/96 (61%)
 Frame = +3

Query: 30  LQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKYFQNMEKKDL 209
           + AC +   ++ G  +H++  K G   D+ V NS++  Y+K G+L+  R+ F  + KKD+
Sbjct: 363 ISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDV 422

Query: 210 VTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
            TWNS+I GYCQ    G+A+ LF  MH+ D+ P +V
Sbjct: 423 YTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVV 458



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/102 (31%), Positives = 51/102 (50%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           P+      IL AC N    +    IH  + +  +  ++ V N ++ TYAK G++   +  
Sbjct: 526 PNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTI 585

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEP 308
           FQ +  KD+++WNS+IAGY        A  LFD M    ++P
Sbjct: 586 FQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKP 627


>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1218

 Score =  128 bits (322), Expect = 4e-28
 Identities = 58/105 (55%), Positives = 76/105 (72%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           PD FL PKILQACGNS D+++G ++H++  KCGVD    V+NSIL+ YAKCG L    K 
Sbjct: 172 PDAFLLPKILQACGNSRDIKSGEMVHSLAIKCGVDGYPFVNNSILAVYAKCGKLSLASKC 231

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F+ M+K +   WN++I+GYCQ  +I EA RLFD M +E +EPGLV
Sbjct: 232 FEMMDKSETAAWNALISGYCQHGQIEEAQRLFDAMREEGIEPGLV 276



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 39/105 (37%), Positives = 57/105 (54%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           P+       + AC +   +  G  IHA+  K G   D+ V NS++  Y+KCG L++  K 
Sbjct: 343 PNGVTISSAVSACASLKVLNEGLEIHALAVKLGFVEDVLVGNSLIDMYSKCGKLENAWKV 402

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F  M +KD+ TWNS+I GYCQ    G+AH LF  M   + +P  +
Sbjct: 403 FDMMPEKDVYTWNSMIGGYCQVGYCGKAHMLFMKMQKSETQPNAI 447



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/71 (38%), Positives = 40/71 (56%)
 Frame = +3

Query: 27  ILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKYFQNMEKKD 206
           +L AC N   ++    IH  V +  +D  + + NS++ TYAK G++   R  F     KD
Sbjct: 523 VLPACANLIALKMVKEIHGCVIRRNLDSLLPITNSLIDTYAKSGNIGYSRTIFDRALFKD 582

Query: 207 LVTWNSVIAGY 239
            +TWNS+IAGY
Sbjct: 583 FITWNSLIAGY 593


>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  123 bits (309), Expect = 1e-26
 Identities = 57/105 (54%), Positives = 75/105 (71%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           PD FLFPKILQACGN  D+ T  LIH++V +CG+   +R+ NSIL+ + KCG L   RK+
Sbjct: 178 PDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKF 237

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F NM+++D V+WN +IAGYCQK    EA RL D M ++  +PGLV
Sbjct: 238 FGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLV 282



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 35/105 (33%), Positives = 56/105 (53%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           P+         AC +   ++ G  IH    K G+  +  V NS++  Y+KCG L++ R  
Sbjct: 349 PNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHV 408

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F  + +KD+ TWNS+I GYCQ    G+A+ LF  + +  + P +V
Sbjct: 409 FDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVV 453



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 36/102 (35%), Positives = 53/102 (51%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           P+      IL AC N    +    IH  V +  ++ ++ V NS++ TYAK G++   R  
Sbjct: 521 PNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTV 580

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEP 308
           F  M  KD++TWNS+IAGY        A +LFD M +  + P
Sbjct: 581 FNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRP 622



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/94 (31%), Positives = 49/94 (52%)
 Frame = +3

Query: 27  ILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKYFQNMEKKD 206
           +LQ C + G +  G  +H  +      V+  V   ++S YAKCG L   RK F  M++++
Sbjct: 86  LLQTCIDVGSIELGRELHVRMGLVH-RVNPFVETKLVSMYAKCGCLKDARKVFDGMQERN 144

Query: 207 LVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEP 308
           L TW+++I  Y ++    E   LF LM  + + P
Sbjct: 145 LYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLP 178


>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  123 bits (309), Expect = 1e-26
 Identities = 57/105 (54%), Positives = 75/105 (71%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           PD FLFPKILQACGN  D+ T  LIH++V +CG+   +R+ NSIL+ + KCG L   RK+
Sbjct: 178 PDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKF 237

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F NM+++D V+WN +IAGYCQK    EA RL D M ++  +PGLV
Sbjct: 238 FGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLV 282



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 35/105 (33%), Positives = 56/105 (53%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           P+         AC +   ++ G  IH    K G+  +  V NS++  Y+KCG L++ R  
Sbjct: 349 PNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHV 408

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F  + +KD+ TWNS+I GYCQ    G+A+ LF  + +  + P +V
Sbjct: 409 FDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVV 453



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 36/102 (35%), Positives = 53/102 (51%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           P+      IL AC N    +    IH  V +  ++ ++ V NS++ TYAK G++   R  
Sbjct: 521 PNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTV 580

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEP 308
           F  M  KD++TWNS+IAGY        A +LFD M +  + P
Sbjct: 581 FNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRP 622



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/94 (31%), Positives = 49/94 (52%)
 Frame = +3

Query: 27  ILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKYFQNMEKKD 206
           +LQ C + G +  G  +H  +      V+  V   ++S YAKCG L   RK F  M++++
Sbjct: 86  LLQTCIDVGSIELGRELHVRMGLVH-RVNPFVETKLVSMYAKCGCLKDARKVFDGMQERN 144

Query: 207 LVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEP 308
           L TW+++I  Y ++    E   LF LM  + + P
Sbjct: 145 LYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLP 178


>ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata] gi|297338906|gb|EFH69323.1| hypothetical protein
           ARALYDRAFT_472198 [Arabidopsis lyrata subsp. lyrata]
          Length = 1490

 Score =  121 bits (304), Expect = 5e-26
 Identities = 56/105 (53%), Positives = 73/105 (69%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           PD+FLFPKILQ C N GDV TG LIH++V K G+   +RV NSIL+ YAKCG+ D   K+
Sbjct: 179 PDDFLFPKILQGCANCGDVETGKLIHSVVIKLGMSSCLRVSNSILAVYAKCGEWDFATKF 238

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F+ M+++D+V WNSV+  YCQ  +  EA  L + M  E + PGLV
Sbjct: 239 FRRMKERDVVAWNSVLLAYCQNGKHEEAVELVEEMEKEGISPGLV 283



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 38/105 (36%), Positives = 60/105 (57%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           P+       + AC     +  G+ +H+I  K G   D+ V NS++  Y+KCG L+  RK 
Sbjct: 350 PNAVTIMSAVSACSYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKV 409

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEPGLV 317
           F +++ KD+ TWNS+I GYCQ    G+A+ LF  M D ++ P ++
Sbjct: 410 FDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANVRPNII 454



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 35/102 (34%), Positives = 51/102 (50%)
 Frame = +3

Query: 3   PDEFLFPKILQACGNSGDVRTGNLIHAIVAKCGVDVDIRVHNSILSTYAKCGDLDSMRKY 182
           P+      +L AC N    +    IH  V +  +D    V N++  TYAK GD+   +  
Sbjct: 522 PNSVTILSLLPACANLLGTKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIGYSKTI 581

Query: 183 FQNMEKKDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEP 308
           F  ME KD++TWNS+I GY      G A  LF+ M  + ++P
Sbjct: 582 FMGMETKDIITWNSLIGGYVLHGSYGPALELFNQMKTQGIKP 623



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
 Frame = +3

Query: 27  ILQACGNSGDVRTGNLIHAIVAKCGV--DVDIRVHNSILSTYAKCGDLDSMRKYFQNMEK 200
           +L++C +SG +  G ++HA   + G+  + D+ V   +LS YAKCG L   RK F +M +
Sbjct: 87  LLESCIDSGSIHLGRILHA---RFGLFPEPDVFVETKLLSMYAKCGCLVDARKVFDSMRE 143

Query: 201 KDLVTWNSVIAGYCQKDEIGEAHRLFDLMHDEDLEP 308
           ++L TW+++I  Y +++   E  +LF LM +E + P
Sbjct: 144 RNLYTWSAMIGAYSRENRWREVSKLFRLMMEEGVLP 179