BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00029657
         (852 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   424   e-116
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   332   5e-89
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     330   2e-88
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     330   2e-88
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        329   4e-88

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  424 bits (1089), Expect = e-116
 Identities = 212/277 (76%), Positives = 237/277 (85%)
 Frame = -3

Query: 844  TLASDRVRRHNYGKPPIRLGFEDMVAYALQTAEELDPGSEEPSTYKEAVSCTESAHWLAA 665
            ++A DR RR    +PP R GFEDMV YALQ AEE+D  + EPSTYKEA+  ++S  W AA
Sbjct: 753  SIAQDRPRRVGV-RPPTRYGFEDMVGYALQVAEEVD--TSEPSTYKEAILSSDSEKWFAA 809

Query: 664  MGDEMESLHKNQT*ELTKKPRDRKIVTCKWVYKKKEGETSVEGIKYKARLVARGFTQREG 485
            MGDEMESLHKNQT +L  +P  RKI+TCKWV+KKKEG +  EG+KYKAR+VARGF QREG
Sbjct: 810  MGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREG 869

Query: 484  VDYNEIFSPVVRHTSIRTLLAIVAHQDLELEQLDVKTAFLHGDLEEEIYMTQPDGFQVPG 305
            VDYNEIFSPVVRHTSIR LLAIVAHQ+LELEQLDVKTAFLHG+LEEEIYMTQPDGFQVPG
Sbjct: 870  VDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPG 929

Query: 304  KEDYVYKLKKSLYGLKQSPRQWYKKFDSYMKKIGYIRSSYDCCVYYKKAANGSLIYLVLY 125
            KE++V KLKKSLYGLKQSPRQWYK+FDSYM K+GY RSSYDCCVYY +  + S IYLVLY
Sbjct: 930  KENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLY 989

Query: 124  VDDMLIAAENKSDIQELKSLLSAEFEMKDLGAARKTL 14
            VDDMLIAA+ K DIQ+LK LLSAEFEMKDLGAARK L
Sbjct: 990  VDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKIL 1026


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  332 bits (852), Expect = 5e-89
 Identities = 169/280 (60%), Positives = 221/280 (78%), Gaps = 1/280 (0%)
 Frame = -3

Query: 850  QHTLASDRVRRHNYGKPPIRLGFE-DMVAYALQTAEELDPGSEEPSTYKEAVSCTESAHW 674
            + ++A DR +R+   KPP R   E ++VAYAL  AEE++ G+ EPSTY EA+   +   W
Sbjct: 982  KRSIAKDRPKRNI--KPPQRYIEEANIVAYALSVAEEIE-GNAEPSTYSEAIVSDDCNRW 1038

Query: 673  LAAMGDEMESLHKNQT*ELTKKPRDRKIVTCKWVYKKKEGETSVEGIKYKARLVARGFTQ 494
            + AM DEMESL KN T EL K P+++K + CKW++K+KEG +S +  +YKARL+A+G++Q
Sbjct: 1039 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQ 1098

Query: 493  REGVDYNEIFSPVVRHTSIRTLLAIVAHQDLELEQLDVKTAFLHGDLEEEIYMTQPDGFQ 314
              G+D+N++FSPVV+H+SIRTLL+IVA  D ELEQ+DVKTAFLHG+LEE+IYM QP GF 
Sbjct: 1099 IPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFV 1158

Query: 313  VPGKEDYVYKLKKSLYGLKQSPRQWYKKFDSYMKKIGYIRSSYDCCVYYKKAANGSLIYL 134
            VPGKE+ V +LKKSLYGLKQSPRQWYK+FDS+M    + RS+YD CVY  K  +GS IYL
Sbjct: 1159 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYL 1217

Query: 133  VLYVDDMLIAAENKSDIQELKSLLSAEFEMKDLGAARKTL 14
            +LYVDDMLIAA++KS+I +LK+ LS+EFEMKDLGAA+K L
Sbjct: 1218 LLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKIL 1257


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  330 bits (847), Expect = 2e-88
 Identities = 167/280 (59%), Positives = 221/280 (78%), Gaps = 1/280 (0%)
 Frame = -3

Query: 850  QHTLASDRVRRHNYGKPPIRLGFE-DMVAYALQTAEELDPGSEEPSTYKEAVSCTESAHW 674
            + ++A DR +R+   KPP R   E ++VAYAL  AEE++ G+ EPSTY +A+   +   W
Sbjct: 684  KRSIAKDRPKRNT--KPPRRYIEEANIVAYALSVAEEIE-GNAEPSTYSDAIVSDDCNRW 740

Query: 673  LAAMGDEMESLHKNQT*ELTKKPRDRKIVTCKWVYKKKEGETSVEGIKYKARLVARGFTQ 494
            + AM DEMESL KN + EL K P+++K + CKW++K+KEG +  +  +YKARLVA+G++Q
Sbjct: 741  ITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 800

Query: 493  REGVDYNEIFSPVVRHTSIRTLLAIVAHQDLELEQLDVKTAFLHGDLEEEIYMTQPDGFQ 314
              G+D+N++FSPVV+H+SIRTLL+IVA  D ELEQ+DVKTAFLHG+LEE+IYM QP+GF 
Sbjct: 801  IPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 860

Query: 313  VPGKEDYVYKLKKSLYGLKQSPRQWYKKFDSYMKKIGYIRSSYDCCVYYKKAANGSLIYL 134
            VPGKE+ V +LKKSLYGLKQSPRQWYK+FDS+M    + RS+YD CVY  K  +GS IYL
Sbjct: 861  VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYL 919

Query: 133  VLYVDDMLIAAENKSDIQELKSLLSAEFEMKDLGAARKTL 14
            +LYVDDMLIAA++KS+I +LK+ LS+EFEMKDLGAA+K L
Sbjct: 920  LLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKIL 959


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  330 bits (847), Expect = 2e-88
 Identities = 167/280 (59%), Positives = 222/280 (79%), Gaps = 1/280 (0%)
 Frame = -3

Query: 850  QHTLASDRVRRHNYGKPPIRLGFE-DMVAYALQTAEELDPGSEEPSTYKEAVSCTESAHW 674
            + ++A D+ +R+   KPP R   E ++VAYAL  AEE++ G+ EPSTY EA+       W
Sbjct: 654  KRSIAKDKPKRNI--KPPRRYIEEANIVAYALSVAEEIE-GNAEPSTYSEAIVSDGCNRW 710

Query: 673  LAAMGDEMESLHKNQT*ELTKKPRDRKIVTCKWVYKKKEGETSVEGIKYKARLVARGFTQ 494
            + AM DEMESL KN T EL K P+++K + CKW++K+K+G +  +  +YKARLVA+G++Q
Sbjct: 711  ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARLVAKGYSQ 770

Query: 493  REGVDYNEIFSPVVRHTSIRTLLAIVAHQDLELEQLDVKTAFLHGDLEEEIYMTQPDGFQ 314
              G+D+N++FSPV++H+SIRTLL+IVA  D ELEQ+DVKTAFLHG+LEE+IYM QP+GF 
Sbjct: 771  IPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 830

Query: 313  VPGKEDYVYKLKKSLYGLKQSPRQWYKKFDSYMKKIGYIRSSYDCCVYYKKAANGSLIYL 134
            VPGKE+ VY+LKKSLYGLKQSPRQWYK+FDS+M    + RS+YD CVY  K  +GS IYL
Sbjct: 831  VPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYL-KVVDGSSIYL 889

Query: 133  VLYVDDMLIAAENKSDIQELKSLLSAEFEMKDLGAARKTL 14
            +LYVDDMLIAA++KS+I++LK+ LS+EFEMKDLGAA+K L
Sbjct: 890  LLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKIL 929


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  329 bits (844), Expect = 4e-88
 Identities = 166/278 (59%), Positives = 209/278 (75%)
 Frame = -3

Query: 847  HTLASDRVRRHNYGKPPIRLGFEDMVAYALQTAEELDPGSEEPSTYKEAVSCTESAHWLA 668
            + LA DRVRR    + P+R G+ D++AYAL  A+E+    EEP+ + EA+       WL 
Sbjct: 776  YQLARDRVRREV--RAPVRYGYADLIAYALLCADEVT--IEEPANFSEAMESVHCDKWLE 831

Query: 667  AMGDEMESLHKNQT*ELTKKPRDRKIVTCKWVYKKKEGETSVEGIKYKARLVARGFTQRE 488
            AM DEMESL +NQT  L   P +++++ CKW++K+ EG   VE  KYKARLVARGFTQRE
Sbjct: 832  AMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQRE 891

Query: 487  GVDYNEIFSPVVRHTSIRTLLAIVAHQDLELEQLDVKTAFLHGDLEEEIYMTQPDGFQVP 308
            GVD+NEIFSPVV+H+SIR LLA+VA  DLELEQ+DVKTAFLHG+LEE+I M QP+GF+  
Sbjct: 892  GVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECK 951

Query: 307  GKEDYVYKLKKSLYGLKQSPRQWYKKFDSYMKKIGYIRSSYDCCVYYKKAANGSLIYLVL 128
             KEDYV  L KSLYGLKQSPRQWY++FD +M   GY RS YD CVY+  +  G + YL+L
Sbjct: 952  DKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLL 1011

Query: 127  YVDDMLIAAENKSDIQELKSLLSAEFEMKDLGAARKTL 14
            YVDDMLIA++ KS+I+ LK+LL AEFEMKDLG A++ L
Sbjct: 1012 YVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRIL 1049