BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00029619
         (551 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK98732.1|AC090485_11 Putative retroelement [Oryza sativa Ja...    48   1e-09
gb|ABF93966.1| retrotransposon protein, putative, unclassified, ...    48   1e-09
emb|CAE03018.3| OSJNBa0091D06.3 [Oryza sativa Japonica Group]          47   1e-08
emb|CAH67116.1| H0502G05.7 [Oryza sativa Indica Group]                 47   1e-08
gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]      42   5e-07

>gb|AAK98732.1|AC090485_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1923

 Score = 48.1 bits (113), Expect(2) = 1e-09
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -1

Query: 401  LDVRSIKKDNRAVI*WLIQWSNSVSED-TWQHVVDIEEQFSTFNPWGQ*SSHGRGTYASI 225
            LD R I+K NR V   L+ WS+SV+ED TW+   D++++F     WGQ +  G G     
Sbjct: 929  LDQRLIRKGNRTVSQVLVYWSDSVAEDATWEDREDLQQRFPMALAWGQATFQGEGVVKIF 988

Query: 224  NSRIEGNNIA 195
                + NN A
Sbjct: 989  PDGEQENNTA 998



 Score = 39.7 bits (91), Expect(2) = 1e-09
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = -3

Query: 549 YTLQLPDSPKIHPIFHVSQHKKHYGIPPQV 460
           Y LQLPD   IHP+FHVSQ K  +G   QV
Sbjct: 882 YKLQLPDDSTIHPVFHVSQLKVAHGFKHQV 911


>gb|ABF93966.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1920

 Score = 48.1 bits (113), Expect(2) = 1e-09
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -1

Query: 401  LDVRSIKKDNRAVI*WLIQWSNSVSED-TWQHVVDIEEQFSTFNPWGQ*SSHGRGTYASI 225
            LD R I+K NR V   L+ WS+SV+ED TW+   D++++F     WGQ +  G G     
Sbjct: 929  LDQRLIRKGNRTVSQVLVYWSDSVAEDATWEDREDLQQRFPMALAWGQATFQGEGVVKIF 988

Query: 224  NSRIEGNNIA 195
                + NN A
Sbjct: 989  PDGEQENNTA 998



 Score = 39.7 bits (91), Expect(2) = 1e-09
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = -3

Query: 549 YTLQLPDSPKIHPIFHVSQHKKHYGIPPQV 460
           Y LQLPD   IHP+FHVSQ K  +G   QV
Sbjct: 882 YKLQLPDDSTIHPVFHVSQLKVAHGFKHQV 911


>emb|CAE03018.3| OSJNBa0091D06.3 [Oryza sativa Japonica Group]
          Length = 753

 Score = 47.0 bits (110), Expect(2) = 1e-08
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -1

Query: 401 LDVRSIKKDNRAVI*WLIQWSNSVSED-TWQHVVDIEEQFSTFNPWGQ*SSHGRG 240
           LD R  K+ N AV   LIQWS SV ED TW+ + D+  +F     WGQ +S G G
Sbjct: 399 LDRRLTKRGNSAVAQVLIQWSASVPEDATWEDLDDLRSRFPAALAWGQANSQGEG 453



 Score = 37.4 bits (85), Expect(2) = 1e-08
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -3

Query: 549 YTLQLPDSPKIHPIFHVSQHKKHYGIPPQVSWFINPPTLDSSLP 418
           Y LQLP S  IHP+FHVSQ K   G    V   +   T    +P
Sbjct: 352 YQLQLPSSTSIHPVFHVSQLKSAIGFTGPVQHQLPASTAPLQVP 395


>emb|CAH67116.1| H0502G05.7 [Oryza sativa Indica Group]
          Length = 642

 Score = 47.0 bits (110), Expect(2) = 1e-08
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -1

Query: 401 LDVRSIKKDNRAVI*WLIQWSNSVSED-TWQHVVDIEEQFSTFNPWGQ*SSHGRG 240
           LD R  K+ N AV   LIQWS SV ED TW+ + D+  +F     WGQ +S G G
Sbjct: 511 LDRRLTKRGNSAVAQVLIQWSASVPEDATWEDLDDLRSRFPAALAWGQANSQGEG 565



 Score = 37.4 bits (85), Expect(2) = 1e-08
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -3

Query: 549 YTLQLPDSPKIHPIFHVSQHKKHYGIPPQVSWFINPPTLDSSLP 418
           Y LQLP S  IHP+FHVSQ K   G    V   +   T    +P
Sbjct: 464 YQLQLPSSTSIHPVFHVSQLKSAIGFTGPVQHQLPASTAPLQVP 507


>gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1246

 Score = 41.6 bits (96), Expect(2) = 5e-07
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = -3

Query: 549  YTLQLPDSPKIHPIFHVSQHKKHYG 475
            Y LQLP+   IHP+FHVSQ KKH G
Sbjct: 1152 YKLQLPEEANIHPVFHVSQLKKHVG 1176



 Score = 37.0 bits (84), Expect(2) = 5e-07
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 392  RSIKKDNRAVI*WLIQWSNSVSED-TWQHVVDIEEQFSTFNP 270
            R I + N  V+ WLI W N   ED TW++   I+  F  F P
Sbjct: 1205 RVIPRQNEPVVQWLIHWENLTPEDATWENATFIQATFPHFRP 1246