BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028943
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]              117   8e-25
gb|AAD37341.1|AF140604_5 reverse transcriptase [Cauliflower mosa...   117   8e-25
sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Inclu...   117   8e-25
ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57...   115   5e-24
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu...   112   3e-23

>gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]
          Length = 675

 Score =  117 bits (294), Expect = 8e-25
 Identities = 60/114 (52%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
 Frame = -1

Query: 342 VKTANGI-ITINKVCKNLNIMINGKYFHIPTVYQQESGMDFILGNNFCLTYGPFTQHLDH 166
           VK A+G  ITINKVC++++++I G+ FHIPTVYQQESG+DFI+GNNFC  Y PF Q  D 
Sbjct: 75  VKIADGSSITINKVCRDIDLIIAGEIFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDR 134

Query: 165 IELYTLDKE-KIQIPKVMRAVRVGMPGYIASTKLGSRIPKPEPVNITSHKTLLL 7
           + ++T D+   + I K+ RAVRVG  G++ S K  S+  +PEPVNI+++K  +L
Sbjct: 135 V-IFTKDRTYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIAIL 187


>gb|AAD37341.1|AF140604_5 reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score =  117 bits (294), Expect = 8e-25
 Identities = 60/114 (52%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
 Frame = -1

Query: 342 VKTANGI-ITINKVCKNLNIMINGKYFHIPTVYQQESGMDFILGNNFCLTYGPFTQHLDH 166
           VK A+G  ITINKVC++++++I G+ FHIPTVYQQESG+DFI+GNNFC  Y PF Q  D 
Sbjct: 74  VKIADGSSITINKVCRDIDLIIAGEIFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDR 133

Query: 165 IELYTLDKE-KIQIPKVMRAVRVGMPGYIASTKLGSRIPKPEPVNITSHKTLLL 7
           + ++T D+   + I K+ RAVRVG  G++ S K  S+  +PEPVNI+++K  +L
Sbjct: 134 V-IFTKDRTYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIAIL 186


>sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase
          Length = 674

 Score =  117 bits (294), Expect = 8e-25
 Identities = 60/114 (52%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
 Frame = -1

Query: 342 VKTANGI-ITINKVCKNLNIMINGKYFHIPTVYQQESGMDFILGNNFCLTYGPFTQHLDH 166
           VK A+G  ITINKVC++++++I G+ FHIPTVYQQESG+DFI+GNNFC  Y PF Q  D 
Sbjct: 74  VKIADGSSITINKVCRDIDLIIAGEIFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDR 133

Query: 165 IELYTLDKE-KIQIPKVMRAVRVGMPGYIASTKLGSRIPKPEPVNITSHKTLLL 7
           + ++T D+   + I K+ RAVRVG  G++ S K  S+  +PEPVNI+++K  +L
Sbjct: 134 V-IFTKDRTYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIAIL 186


>ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57790326|gb|AAW56089.1|
           polyprotein [Horseradish latent virus]
          Length = 679

 Score =  115 bits (287), Expect = 5e-24
 Identities = 56/115 (48%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
 Frame = -1

Query: 342 VKTAN-GIITINKVCKNLNIMINGKYFHIPTVYQQESGMDFILGNNFCLTYGPFTQHLDH 166
           VK AN   IT++K+C+NL+I+I G+ FHI  V+QQESG+DFI+GNNFC  Y PF Q   H
Sbjct: 80  VKIANESTITLDKICRNLDIIIAGERFHIDVVFQQESGIDFIIGNNFCQEYSPFIQFTGH 139

Query: 165 IELYTLDKEKIQIPKVMRAVRVGMPGYIASTKLGSRIPKPEPVNITSHKTLLLER 1
           I     D+ ++ I K+ RA + G+PG++ S K  S   +PEP+NI+++KT+ L R
Sbjct: 140 IVFTMKDQYQVPITKLRRAFKRGIPGFLESMKKRSTAQQPEPLNISTNKTVSLSR 194


>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase
          Length = 679

 Score =  112 bits (280), Expect = 3e-23
 Identities = 58/110 (52%), Positives = 82/110 (74%), Gaps = 2/110 (1%)
 Frame = -1

Query: 342 VKTANGI-ITINKVCKNLNIMINGKYFHIPTVYQQESGMDFILGNNFCLTYGPFTQHLDH 166
           VK A+G  ITI+KVCK+++++I G+ F IPTVYQQESG+DFI+GNNFC  Y PF Q  D 
Sbjct: 72  VKIADGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDR 131

Query: 165 IELYTLDKE-KIQIPKVMRAVRVGMPGYIASTKLGSRIPKPEPVNITSHK 19
           + ++T +K   + I K+ RAVRVG+ G++ S K  S+  +PEPVNI+++K
Sbjct: 132 V-IFTKNKSYPVHITKLTRAVRVGIEGFLESMKKRSKTQQPEPVNISTNK 180