BLASTX nr result

ID: Bupleurum21_contig00028854 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028854
         (433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC37356.1| putative membrane protein [Solanum tuberosum]         134   1e-29
emb|CAC37355.1| putative membrane protein [Solanum tuberosum]         107   1e-21
emb|CAC37357.1| putative membrane protein [Solanum tuberosum]         107   1e-21
emb|CAC37358.1| putative membrane protein [Solanum tuberosum]         107   1e-21
ref|XP_002532004.1| Auxin-induced in root cultures protein 12 pr...   101   7e-20

>emb|CAC37356.1| putative membrane protein [Solanum tuberosum]
          Length = 402

 Score =  134 bits (336), Expect = 1e-29
 Identities = 63/104 (60%), Positives = 77/104 (74%), Gaps = 6/104 (5%)
 Frame = +1

Query: 133 MDSRLLKLLVLFF------IFRSSLAQDCSTYSFTTNNKFSTCVTLPVQNAFLHWTYNPT 294
           MD++LL   ++ F      +F  S  Q+CST+ FT NN FSTC  LPV N+FLHWTY+P 
Sbjct: 1   MDTKLLTSNLVLFSSILLTLFTFSYGQNCSTHQFTNNNLFSTCNPLPVLNSFLHWTYHPD 60

Query: 295 NHTADIAFRHGGVSGSRWVAWALNLGGSGMRGAQSLVAFRNSSG 426
           NHT D+A+RHGGV+ S WVAWALNL G+GM G QSL+AFRNSSG
Sbjct: 61  NHTVDLAYRHGGVTESSWVAWALNLDGTGMAGCQSLIAFRNSSG 104


>emb|CAC37355.1| putative membrane protein [Solanum tuberosum]
          Length = 400

 Score =  107 bits (267), Expect = 1e-21
 Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
 Frame = +1

Query: 145 LLKLLVLFFIFRSSLAQD--CSTYSFTTNNKFSTCVTLPVQNAFLHWTYNPTNHTADIAF 318
           L   +++  +F +S  Q+  CS ++F  N  F+TC  LP+ N+ LHW+Y+P NHT D+A+
Sbjct: 9   LFSSILISTLFSTSYGQNQNCSAFAFRNNQIFATCNALPLLNSVLHWSYHPDNHTVDLAY 68

Query: 319 RHGGVSGSRWVAWALNLGGSGMRGAQSLVAFRNSSG 426
           RHGGV  + WVAW LN+ G+ M G+Q LVAFRNSSG
Sbjct: 69  RHGGVPNTDWVAWGLNIDGTRMVGSQCLVAFRNSSG 104


>emb|CAC37357.1| putative membrane protein [Solanum tuberosum]
          Length = 400

 Score =  107 bits (267), Expect = 1e-21
 Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
 Frame = +1

Query: 145 LLKLLVLFFIFRSSLAQD--CSTYSFTTNNKFSTCVTLPVQNAFLHWTYNPTNHTADIAF 318
           L   +++  +F +S  Q+  CS ++F  N  F+TC  LP+ N+ LHW+Y+P NHT D+A+
Sbjct: 9   LFSSILISTLFSTSYGQNQNCSAFAFRNNQIFATCNALPLLNSVLHWSYHPDNHTVDLAY 68

Query: 319 RHGGVSGSRWVAWALNLGGSGMRGAQSLVAFRNSSG 426
           RHGGV  + WVAW LN+ G+ M G+Q LVAFRNSSG
Sbjct: 69  RHGGVPNTDWVAWGLNIDGTRMVGSQCLVAFRNSSG 104


>emb|CAC37358.1| putative membrane protein [Solanum tuberosum]
          Length = 400

 Score =  107 bits (267), Expect = 1e-21
 Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
 Frame = +1

Query: 145 LLKLLVLFFIFRSSLAQD--CSTYSFTTNNKFSTCVTLPVQNAFLHWTYNPTNHTADIAF 318
           L   +++  +F +S  Q+  CS ++F  N  F+TC  LP+ N+ LHW+Y+P NHT D+A+
Sbjct: 9   LFSSILISTLFSTSYGQNQNCSAFAFRNNQIFATCNALPLLNSVLHWSYHPDNHTVDLAY 68

Query: 319 RHGGVSGSRWVAWALNLGGSGMRGAQSLVAFRNSSG 426
           RHGGV  + WVAW LN+ G+ M G+Q LVAFRNSSG
Sbjct: 69  RHGGVPNTDWVAWGLNIDGTRMVGSQCLVAFRNSSG 104


>ref|XP_002532004.1| Auxin-induced in root cultures protein 12 precursor, putative
           [Ricinus communis] gi|223528335|gb|EEF30377.1|
           Auxin-induced in root cultures protein 12 precursor,
           putative [Ricinus communis]
          Length = 385

 Score =  101 bits (251), Expect = 7e-20
 Identities = 46/99 (46%), Positives = 68/99 (68%)
 Frame = +1

Query: 130 SMDSRLLKLLVLFFIFRSSLAQDCSTYSFTTNNKFSTCVTLPVQNAFLHWTYNPTNHTAD 309
           S+ + L   ++L  +   SLAQ C T++F++N  ++TC  LP  ++FLHW Y+P+N TAD
Sbjct: 4   SLRAALFSCVLLMCLSVPSLAQTCGTFTFSSNQIYATCSDLPQLDSFLHWNYHPSNMTAD 63

Query: 310 IAFRHGGVSGSRWVAWALNLGGSGMRGAQSLVAFRNSSG 426
           IAFR  G + S WV WALN  G  M+G+Q+L+AF +S+G
Sbjct: 64  IAFRRTGTTTSNWVVWALNPTGQQMQGSQALLAFHDSTG 102


Top