BLASTX nr result

ID: Bupleurum21_contig00028774 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028774
         (740 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327112.1| predicted protein [Populus trichocarpa] gi|2...    71   3e-10
ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional ...    70   5e-10
ref|XP_003544447.1| PREDICTED: uncharacterized RNA-binding prote...    69   8e-10
ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding prote...    64   3e-08
emb|CBI19566.3| unnamed protein product [Vitis vinifera]               64   3e-08

>ref|XP_002327112.1| predicted protein [Populus trichocarpa] gi|222835427|gb|EEE73862.1|
           predicted protein [Populus trichocarpa]
          Length = 429

 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
 Frame = +1

Query: 16  DPNVNDEEVK-PFSQCGKIDL*RYQLAKGVALLVCKQK*--------CKGTAIGKQTVCV 168
           DPNV DE++K PFSQ G+I   +  + KG   +    +           GT IGKQTV +
Sbjct: 304 DPNVTDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRDNAEEALQKLNGTVIGKQTVRL 363

Query: 169 SWGHNPANKQFGAAYGSPWTG 231
           SWG NPANKQF A +GSPW G
Sbjct: 364 SWGRNPANKQFRADFGSPWNG 384


>ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
           [Glycine max]
          Length = 401

 Score = 70.1 bits (170), Expect = 5e-10
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
 Frame = +1

Query: 16  DPNVNDEEVK-PFSQCGKIDL*RYQLAKGVALLVCKQK*--------CKGTAIGKQTVCV 168
           DPNV+DE+++ PFSQ G+I   +  + KG   +    +           GT IGKQTV +
Sbjct: 279 DPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 338

Query: 169 SWGHNPANKQFGAAYGSPWTG 231
           SWG NPANKQF   +GSPWTG
Sbjct: 339 SWGRNPANKQFRMDFGSPWTG 359


>ref|XP_003544447.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
           [Glycine max]
          Length = 425

 Score = 69.3 bits (168), Expect = 8e-10
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 9/81 (11%)
 Frame = +1

Query: 16  DPNVNDEEVK-PFSQCGKIDL*RYQLAKGVALLVCKQK*--------CKGTAIGKQTVCV 168
           DPNV+DE+++ PFSQ G+I   +  + KG   +    +           GT+IGKQTV +
Sbjct: 303 DPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRL 362

Query: 169 SWGHNPANKQFGAAYGSPWTG 231
           SWG NPANKQF   +G+PWTG
Sbjct: 363 SWGRNPANKQFRMDFGNPWTG 383


>ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
           isoform 1 [Vitis vinifera]
          Length = 409

 Score = 63.9 bits (154), Expect = 3e-08
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
 Frame = +1

Query: 16  DPNVNDEEVK-PFSQCGKIDL*RYQLAKGVALLVCKQK*--------CKGTAIGKQTVCV 168
           DPNV+DE+++ PFSQ G+I   +  + KG   +    +           GT IGKQTV +
Sbjct: 287 DPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRL 346

Query: 169 SWGHNPANKQFGAAYGSPWTG 231
           SWG NPANKQ  A +G+ W+G
Sbjct: 347 SWGRNPANKQMRADFGNQWSG 367


>emb|CBI19566.3| unnamed protein product [Vitis vinifera]
          Length = 324

 Score = 63.9 bits (154), Expect = 3e-08
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
 Frame = +1

Query: 16  DPNVNDEEVK-PFSQCGKIDL*RYQLAKGVALLVCKQK*--------CKGTAIGKQTVCV 168
           DPNV+DE+++ PFSQ G+I   +  + KG   +    +           GT IGKQTV +
Sbjct: 202 DPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRL 261

Query: 169 SWGHNPANKQFGAAYGSPWTG 231
           SWG NPANKQ  A +G+ W+G
Sbjct: 262 SWGRNPANKQMRADFGNQWSG 282


Top