BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028752
         (1189 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO23086.1| putative gag-pol precursor [Oryza sativa Japonica...   149   1e-33
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...   142   1e-31
gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subc...   142   2e-31
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   141   3e-31
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...   141   3e-31

>gb|AAO23086.1| putative gag-pol precursor [Oryza sativa Japonica Group]
          Length = 971

 Score =  149 bits (376), Expect = 1e-33
 Identities = 117/411 (28%), Positives = 204/411 (49%), Gaps = 24/411 (5%)
 Frame = +2

Query: 8    VRQEHGESLRNFLVRFRAEVAEIPNLVEELAINYLAAGVDKTRHGSMLEEFFDKNPKTLQ 187
            +RQ  GES+R ++ RF     ++ ++ E   IN  +AG+     G +  +  +K P+TL+
Sbjct: 460  IRQRPGESIREYMRRFSQARCQVEDITEASVINAASAGL---LEGELTRKIANKEPQTLE 516

Query: 188  AGFQILEHRLTLQEAVGSMHSTMATRNDYKKQD-EPVKPQGQINRPWQRGRSDNEYTKLN 364
               +I++     +E         A + +Y K      + Q Q+  P Q G++   + K  
Sbjct: 517  HLVRIIDGFAKSEE---DSKRRQAIQTEYDKASIAAAQAQAQVKPPRQ-GQAPMTWRKFR 572

Query: 365  TDRA--SILAVLKTEXXXXXXXXXXXXXXXS--------NFYCDYHEDTGHTTDRCYQLK 514
            TDRA  +++AV + +                        + YC +H  + HTT++C  ++
Sbjct: 573  TDRAGKAVMAVEEVQALRKEFDAQQASNHQQPVRKKVRKDLYCAFHGRSSHTTEQCQNIR 632

Query: 515  ---DYIESKIRQGQLVHY---VSQEKPLSLD-------RVIDVIFGGEASGGKSNNGRKA 655
               +  +++ +QG  +      +QE+   ++       RVI VI   +  G  S   +K 
Sbjct: 633  QRGNAQDTRSQQGTTIEAPREAAQEQTPPVEQRQDAQRRVIQVITRADPPGQLSKRQKKM 692

Query: 656  YARMVGSISSGSSKRPHTMISQAISFSDDDYAPGFIPDHQDALVITTKIGCNQAKKILID 835
            + R V SI+S   + P   ++Q ISF  +D A G +  HQD LVI+ +I   +  +IL+D
Sbjct: 693  HIRAVHSITSAGKRAPQ-YVNQLISFGPED-AEGVMFPHQDPLVISAEIAGFEVWRILVD 750

Query: 836  SGAAVDVLYKSALDRMDLGERRVVSSAVTPLYGFSGNEVKVVGTIDLPVLFGNLPCQRWD 1015
             G++ DV++  A  +M L   + ++ A   + GF G  V+V+G   L + FG+   +R +
Sbjct: 751  GGSSADVIFVEAYAKMGL-PTQALTPAPASIRGFGGEAVQVLGQALLLIAFGSGENRREE 809

Query: 1016 IVHFNVVDAPSCYNAILGRTSLSAIRAVTSIHHLKMKFPTEFGVGEIRGDQ 1168
             V F+VVD P  YNAILGR +L+   A++  ++LK+K P   GV  ++G Q
Sbjct: 810  QVLFDVVDIPYNYNAILGRATLNKFEAISHHNYLKLKMPGPAGVIVVKGLQ 860


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score =  142 bits (359), Expect = 1e-31
 Identities = 86/259 (33%), Positives = 135/259 (52%), Gaps = 17/259 (6%)
 Frame = +2

Query: 458  YCDYHEDTGHTTDRCYQLKDYIESKI------------RQGQLVHYVSQEKPLSL----- 586
            +C  H   GH+T+ C Q+   +E  +            ++GQ      Q   +       
Sbjct: 631  FCHIHGPGGHSTEECRQMTHLLEKHVNRYEDKYEGARDQRGQNAIEAPQVMKIEAIEEVP 690

Query: 587  DRVIDVIFGGEASGGKSNNGRKAYARMVGSISSGSSKRPHTMISQAISFSDDDYAPGFIP 766
             RVI+ I GG + G +S   RKAY R V  + +     P       ISF  +D A G + 
Sbjct: 691  KRVINAITGGSSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVISFGPED-AEGILF 749

Query: 767  DHQDALVITTKIGCNQAKKILIDSGAAVDVLYKSALDRMDLGERRVVSSAVTPLYGFSGN 946
             HQD LV++ +I   + +++LID G++ DVL+  A  +M + E R+ ++ V PL GF G 
Sbjct: 750  PHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGV-PLQGFGGQ 808

Query: 947  EVKVVGTIDLPVLFGNLPCQRWDIVHFNVVDAPSCYNAILGRTSLSAIRAVTSIHHLKMK 1126
            +V  +G I L V+FG     R + + F+VVD P  YNAILGR++++   A+   +++ MK
Sbjct: 809  QVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMK 868

Query: 1127 FPTEFGVGEIRGDQIESRK 1183
             P   GV  +RG+Q+ +RK
Sbjct: 869  LPGPRGVITVRGEQLAARK 887


>gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1767

 Score =  142 bits (357), Expect = 2e-31
 Identities = 122/429 (28%), Positives = 206/429 (48%), Gaps = 42/429 (9%)
 Frame = +2

Query: 8    VRQEHGESLRNFLVRFRAEVAEIPNLVEELAINYLAAGVDKTRHGSMLEEFFDKNPKTLQ 187
            +RQ  GES+R ++ RF     ++ ++ E   IN  +AG+     G +  +  +K P+TL+
Sbjct: 409  IRQRPGESIREYMRRFSQARCQVQDITEASVINAASAGL---LEGELTRKIANKEPQTLE 465

Query: 188  A------GFQILEHRLTLQEAVGSMHS-TMATRNDYKKQDEPVKP------------QGQ 310
                   GF   E     ++A+ + +          + Q + V+P            QGQ
Sbjct: 466  HLLRITDGFARGEEDSKRRQAIQAEYDKAFVAAAQAQAQVQIVEPPPLSVRQSQPAIQGQ 525

Query: 311  INRPWQRGRSDNEYTKLNTDRA--SILAVLKTEXXXXXXXXXXXXXXXS--------NFY 460
               P ++G++   + K  TDRA  +++AV + +                        + Y
Sbjct: 526  ---PPRQGQAPMTWRKFRTDRAGKAVMAVEEVQALRKEFDAQQASNHQQPARKKVRKDLY 582

Query: 461  CDYHEDTGHTTDRCYQLK---DYIESKIRQGQLVHY----VSQEKPLSLDR------VID 601
            C +H  + HTT++C  ++   +  + + +QG  V      V ++ PL+  R      VI 
Sbjct: 583  CAFHGRSLHTTEQCLNIRQRGNAQDPRPQQGTTVEAPREAVQEQIPLAEQRQDTQRRVIQ 642

Query: 602  VIFGGEASGGKSNNGRKAYARMVGSISSGSSKRPHTMISQAISFSDDDYAPGFIPDHQDA 781
            VI   +     S   RK   RMV SI+S     P   ++Q ISF  +D A G +  HQD 
Sbjct: 643  VITRADPPSLLSKRQRKMQIRMVHSITSAGEGAPQ-YVNQLISFGPED-AEGVLFPHQDP 700

Query: 782  LVITTKIGCNQAKKILIDSGAAVDVLYKSALDRMDLGERRVVSSAVTPLYGFSGNEVKVV 961
            LVI+ +I   + ++IL+D G++ DV++  A  +M L   + ++ A T L GF G  V+V+
Sbjct: 701  LVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGL-PTQTLAPAPTSLRGFGGEAVQVL 759

Query: 962  GTIDLPVLFGNLPCQRWDIVHFNVVDAPSCYNAILGRTSLSAIRAVTSIHHLKMKFPTEF 1141
            G   L + FG+   +R + + F+VVD P  YNAI GR +L+   A++  ++LK+K P   
Sbjct: 760  GQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPT 819

Query: 1142 GVGEIRGDQ 1168
            GV  ++G Q
Sbjct: 820  GVIVVKGLQ 828


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  141 bits (356), Expect = 3e-31
 Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 17/259 (6%)
 Frame = +2

Query: 458  YCDYHEDTGHTTDRCYQLKDYIESKI------------RQGQLVHYVSQEKPLSL----- 586
            +C  H   GH+T+ C Q+   +E  +            ++GQ      Q   +       
Sbjct: 631  FCHIHGPGGHSTEECRQMTHLLEKHVNRYENKYEGARDQRGQNAIKAPQVMKIEAIEEVP 690

Query: 587  DRVIDVIFGGEASGGKSNNGRKAYARMVGSISSGSSKRPHTMISQAISFSDDDYAPGFIP 766
             RVI+ I GG + G +S   RKAY R V  + +    +P       ISF  +D A G + 
Sbjct: 691  KRVINAITGGSSLGVESKRQRKAYVRQVNHVGTIYQSKPPVYSKTVISFGPED-AEGILF 749

Query: 767  DHQDALVITTKIGCNQAKKILIDSGAAVDVLYKSALDRMDLGERRVVSSAVTPLYGFSGN 946
             HQD LV++ +I   + +++LID G++ DVL+  A  +M + E R+ ++ V PL GF G 
Sbjct: 750  PHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGV-PLQGFGGQ 808

Query: 947  EVKVVGTIDLPVLFGNLPCQRWDIVHFNVVDAPSCYNAILGRTSLSAIRAVTSIHHLKMK 1126
            +V  +G I L V+FG     R + + F+VVD P  YNAILGR++++   A+   +++ MK
Sbjct: 809  QVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMK 868

Query: 1127 FPTEFGVGEIRGDQIESRK 1183
             P   GV  +RG+Q+ +RK
Sbjct: 869  LPGPRGVITVRGEQLVARK 887


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1459

 Score =  141 bits (356), Expect = 3e-31
 Identities = 89/263 (33%), Positives = 138/263 (52%), Gaps = 18/263 (6%)
 Frame = +2

Query: 449  SNFYCDYHEDTGHTTDRCYQLKDYIESKIRQ----------------GQLVHYVS--QEK 574
            S FY   H    H T+ C Q+   +E  +RQ                GQ V  +   +E 
Sbjct: 148  SKFY-KVHGPCNHATEECRQMASLVEKHVRQYDGKYEGVQGGQNMLEGQKVMKIEAIEEA 206

Query: 575  PLSLDRVIDVIFGGEASGGKSNNGRKAYARMVGSISSGSSKRPHTMISQAISFSDDDYAP 754
            P    RVI+ I GG + G +S   RKAY R +  + +     P    +  ISF  +D A 
Sbjct: 207  P---KRVINAITGGSSLGVESKRQRKAYVRQIHHVGTSYQSVPPAYSNTVISFGPED-AE 262

Query: 755  GFIPDHQDALVITTKIGCNQAKKILIDSGAAVDVLYKSALDRMDLGERRVVSSAVTPLYG 934
            G +  HQD LVI+ +I   + +++L+D G++ DVL+  A  +M + E R+  + + PL G
Sbjct: 263  GILFPHQDPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGI-PLQG 321

Query: 935  FSGNEVKVVGTIDLPVLFGNLPCQRWDIVHFNVVDAPSCYNAILGRTSLSAIRAVTSIHH 1114
            F G++V  +G I L V+FG    +R + V F+VVD P  YNA+LGR++++   A+   ++
Sbjct: 322  FGGHQVHTIGKISLQVVFGGGENKRREEVVFDVVDMPYQYNAVLGRSTINIFEAIIHHNY 381

Query: 1115 LKMKFPTEFGVGEIRGDQIESRK 1183
            + MK P   GV  +RG Q+ +RK
Sbjct: 382  ICMKLPGPKGVISVRGGQLAARK 404