BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028616
         (1016 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   276   2e-93
gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida]        268   5e-88
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-...   255   1e-86
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   257   2e-84
ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis t...   242   1e-81

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  276 bits (707), Expect(2) = 2e-93
 Identities = 154/267 (57%), Positives = 195/267 (73%), Gaps = 10/267 (3%)
 Frame = -3

Query: 885  ARSANLHVLDGIYTRMGSSDNIQQGRSTFLEELSEASNILHSCSTRSLVIIDELGRGTST 706
            A SA L VLDGI+TRMGSSD+IQQGRSTFLEELSEAS+I+H+C++RSLVIIDELGRGTST
Sbjct: 852  ASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEASHIIHNCTSRSLVIIDELGRGTST 911

Query: 705  HDGVAIAYATLQYLLEHKRCMTLFVTHYPKIVDLTIRYPRSVGAYHVSYMTSKK------ 544
            HDGVAIAYATL YLLEHKRCM LFVTHYPKIVD+   +P SVGAYHVSYM S++      
Sbjct: 912  HDGVAIAYATLHYLLEHKRCMVLFVTHYPKIVDVKNEFPGSVGAYHVSYMMSQRAMDMDT 971

Query: 543  --DSASISSDQRGDILNYEDVIYLYKLVPGVSKSSFGFKVAQLAQIPTSCISQAISMATK 370
              D     SD+    +++EDV YLYKLVPGVS+ SFGFKVAQLAQ+P+SCI +A  MA +
Sbjct: 972  DTDKTDSKSDKNAQTMDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSSCIRRANVMAAE 1031

Query: 369  LEAAVSNRKKCRLVSPEKNRAENAPMKLMEDLDSTCSK--ETGDQKELCMAYKEMFYNIN 196
            LEA + +R K    S  +   + +   +   + S CS+  + G +++ C   +E F ++ 
Sbjct: 1032 LEAMIVSRVK---NSSAQKTLQGSQQSI--SIQSGCSRAEQIGLEEDAC---REFFLDLK 1083

Query: 195  LATIVDDDLEKSIQLLKHAKSLALELI 115
             A + + D E+S+Q LKHA+S+A ELI
Sbjct: 1084 SA-LGNADPERSLQFLKHARSIAKELI 1109



 Score = 93.6 bits (231), Expect(2) = 2e-93
 Identities = 41/45 (91%), Positives = 45/45 (100%)
 Frame = -1

Query: 1016 QDNFVPNDTNLHSDGEYCQIITGPNMGGKSCYIRQVALIAIMAQL 882
            QDNFVPNDTNLH+DGEYC+I+TGPNMGGKSCYIRQVALIAIMAQ+
Sbjct: 802  QDNFVPNDTNLHADGEYCEIVTGPNMGGKSCYIRQVALIAIMAQV 846


>gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida]
          Length = 846

 Score =  268 bits (684), Expect(2) = 5e-88
 Identities = 147/267 (55%), Positives = 186/267 (69%), Gaps = 8/267 (2%)
 Frame = -3

Query: 885  ARSANLHVLDGIYTRMGSSDNIQQGRSTFLEELSEASNILHSCSTRSLVIIDELGRGTST 706
            A SA LHVLDGIYTRMG+SD+IQQGRSTFLEELSEAS+IL  CS  SLVI+DELGRGTST
Sbjct: 580  AFSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSEASDILKKCSASSLVILDELGRGTST 639

Query: 705  HDGVAIAYATLQYLLEHKRCMTLFVTHYPKIVDLTIRYPRSVGAYHVSYMTSKKD-SASI 529
            HDGVAIA+ATLQYLLEHK+CM LFVTHYP+IV +   +P SVG YHVSY+TS+ D +   
Sbjct: 640  HDGVAIAFATLQYLLEHKKCMVLFVTHYPEIVSVKNEFPGSVGPYHVSYLTSQGDVTGDC 699

Query: 528  SSDQRGDILNYEDVIYLYKLVPGVSKSSFGFKVAQLAQIPTSCISQAISMATKLEAAVSN 349
             S+++ + +N ED+ YLYKL PGV++ SFGFKVAQLAQ+P +CI +AI +A +LEAAV N
Sbjct: 700  RSNEKMNYINSEDITYLYKLAPGVAERSFGFKVAQLAQLPVACIQRAIVIAGRLEAAVCN 759

Query: 348  -RKKCRLVSPEKNRAENAPMKLMEDLDSTCSKETGDQKEL-CM-----AYKEMFYNINLA 190
              ++ R+             K  E +D            + C+      Y+E+F NIN A
Sbjct: 760  YTEQSRIRRSYSINYRQDGCKSSEPVDDVLEPYLSSAGSVNCIDNSSELYRELFLNINFA 819

Query: 189  TIVDDDLEKSIQLLKHAKSLALELIDR 109
             + ++  ++  Q L  AKSLA +LI R
Sbjct: 820  LLEENGGDRRFQFLMQAKSLAAQLISR 846



 Score = 84.3 bits (207), Expect(2) = 5e-88
 Identities = 37/45 (82%), Positives = 43/45 (95%)
 Frame = -1

Query: 1016 QDNFVPNDTNLHSDGEYCQIITGPNMGGKSCYIRQVALIAIMAQL 882
            QDNFV NDT+LH++ EYCQI+TGPNMGGKSCYIRQVALIA+MAQ+
Sbjct: 530  QDNFVSNDTDLHAEREYCQIVTGPNMGGKSCYIRQVALIALMAQV 574


>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
          Length = 1070

 Score =  255 bits (651), Expect(2) = 1e-86
 Identities = 148/263 (56%), Positives = 179/263 (68%), Gaps = 4/263 (1%)
 Frame = -3

Query: 885  ARSANLHVLDGIYTRMGSSDNIQQGRSTFLEELSEASNILHSCSTRSLVIIDELGRGTST 706
            A SA LHVLD IYTRMG+SD+IQ GRSTFLEELSE S+IL+SC+  SLVIIDELGRGTST
Sbjct: 819  ASSAKLHVLDRIYTRMGASDSIQLGRSTFLEELSETSHILNSCTEHSLVIIDELGRGTST 878

Query: 705  HDGVAIAYATLQYLLEHKRCMTLFVTHYPKIVDLTIRYPRSVGAYHVSYMTSKKDSASIS 526
            HDG+AIA+ATL YLL+ KR M LFVTHYPKI  L   +P SV AYHVS++ S   S + +
Sbjct: 879  HDGMAIAHATLHYLLKQKRSMVLFVTHYPKIASLATEFPGSVAAYHVSHLISHDASKNSN 938

Query: 525  SDQRGDILNYEDVIYLYKLVPGVSKSSFGFKVAQLAQIPTSCISQAISMATKLEAAVSNR 346
             D         DV YLYKLVPGVS+ SFGFKVAQLAQ+P+ CIS+AI MA+KLEA V++R
Sbjct: 939  LD--------HDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSR 990

Query: 345  KKCR----LVSPEKNRAENAPMKLMEDLDSTCSKETGDQKELCMAYKEMFYNINLATIVD 178
               R    L+       +     + + LD          KE  MAYK+ + N+  AT  D
Sbjct: 991  IHGRSTKELLLDTLVIGQEKEQLMAQSLDR-------PHKEFDMAYKDFYLNLKAAT-ED 1042

Query: 177  DDLEKSIQLLKHAKSLALELIDR 109
            DD  KS  LL+HA+S+A +LI R
Sbjct: 1043 DDWAKSFHLLEHARSIAKKLIGR 1065



 Score = 92.4 bits (228), Expect(2) = 1e-86
 Identities = 40/45 (88%), Positives = 44/45 (97%)
 Frame = -1

Query: 1016 QDNFVPNDTNLHSDGEYCQIITGPNMGGKSCYIRQVALIAIMAQL 882
            QDNFVPNDTN+H+DGEYCQI+TGPNMGGKSCYIRQVALI IMAQ+
Sbjct: 769  QDNFVPNDTNMHADGEYCQIVTGPNMGGKSCYIRQVALIVIMAQV 813


>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
            gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
            MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  257 bits (656), Expect(2) = 2e-84
 Identities = 147/265 (55%), Positives = 182/265 (68%), Gaps = 6/265 (2%)
 Frame = -3

Query: 885  ARSANLHVLDGIYTRMGSSDNIQQGRSTFLEELSEASNILHSCSTRSLVIIDELGRGTST 706
            A SA LHVLDGIYTRMG+SD+IQQGRSTFLEELSE S+IL  C+  SLVIIDELGRGTST
Sbjct: 843  ASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILRKCTGYSLVIIDELGRGTST 902

Query: 705  HDGVAIAYATLQYLLEHKRCMTLFVTHYPKIVDLTIRYPRSVGAYHVSYMTSKKDSASIS 526
            HDG AIAYATL +LLE KRCM LFVTHYPKI ++   +  SVGAYHVSY+ ++K++ +  
Sbjct: 903  HDGEAIAYATLCHLLEQKRCMVLFVTHYPKIANIRTGFLNSVGAYHVSYLMAEKNNDATD 962

Query: 525  SDQRGDILNYEDVIYLYKLVPGVSKSSFGFKVAQLAQIPTSCISQAISMATKLEAAVSNR 346
            S       + EDV YLYKLVPGVS+ SFGFKVAQLAQ+PTSCI +A  MA +LE A+S R
Sbjct: 963  SK-----FDNEDVTYLYKLVPGVSERSFGFKVAQLAQLPTSCIERATVMAARLEEAISCR 1017

Query: 345  KKCRLVSPEKNRA------ENAPMKLMEDLDSTCSKETGDQKELCMAYKEMFYNINLATI 184
             + RL   +  +A      +    K+ E   +   K   + +EL   Y++ F N   A +
Sbjct: 1018 IRNRLDKSQLLKALQIDQLQEIQEKIPESPGNFHDKRIENYEELNNTYEKFFLNFKSALL 1077

Query: 183  VDDDLEKSIQLLKHAKSLALELIDR 109
             DD   KS Q L++A+S+A  LI R
Sbjct: 1078 GDD--AKSFQYLENARSIARALIKR 1100



 Score = 83.2 bits (204), Expect(2) = 2e-84
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = -1

Query: 1013 DNFVPNDTNLHSDGEYCQIITGPNMGGKSCYIRQVALIAIMAQL 882
            DNFVPNDT LH DGE+CQ++TGPNMGGKSCYIRQVALI +MAQ+
Sbjct: 794  DNFVPNDTCLHVDGEHCQVVTGPNMGGKSCYIRQVALIVMMAQV 837


>ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis thaliana]
            gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA
            mismatch repair protein MSH3; Short=AtMSH3; AltName:
            Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1|
            Msh3 protein [Arabidopsis thaliana]
            gi|332659675|gb|AEE85075.1| DNA mismatch repair protein
            Msh3 [Arabidopsis thaliana]
          Length = 1081

 Score =  242 bits (617), Expect(2) = 1e-81
 Identities = 135/254 (53%), Positives = 174/254 (68%), Gaps = 1/254 (0%)
 Frame = -3

Query: 885  ARSANLHVLDGIYTRMGSSDNIQQGRSTFLEELSEASNILHSCSTRSLVIIDELGRGTST 706
            A  A LHVLDG++TRMG+SD+IQ GRSTFLEELSEAS+I+ +CS+RSLVI+DELGRGTST
Sbjct: 845  ASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTST 904

Query: 705  HDGVAIAYATLQYLLEHKRCMTLFVTHYPKIVDLTIRYPRSVGAYHVSYMTSKKDSASIS 526
            HDGVAIAYATLQ+LL  KRC+ LFVTHYP+I +++  +P SVG YHVSY+T +KD  S  
Sbjct: 905  HDGVAIAYATLQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKDKGS-- 962

Query: 525  SDQRGDILNYEDVIYLYKLVPGVSKSSFGFKVAQLAQIPTSCISQAISMATKLEAAVSNR 346
                    +++DV YLYKLV G+   SFGFKVAQLAQIP SCI +AISMA KLEA V  R
Sbjct: 963  -------YDHDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVRAR 1015

Query: 345  KK-CRLVSPEKNRAENAPMKLMEDLDSTCSKETGDQKELCMAYKEMFYNINLATIVDDDL 169
            ++  R+  PE +                  +E    +E   A  ++F ++  A + ++D 
Sbjct: 1016 ERNTRMGEPEGH------------------EEPRGAEESISALGDLFADLKFA-LSEEDP 1056

Query: 168  EKSIQLLKHAKSLA 127
             K+ + LKHA  +A
Sbjct: 1057 WKAFEFLKHAWKIA 1070



 Score = 89.0 bits (219), Expect(2) = 1e-81
 Identities = 40/45 (88%), Positives = 44/45 (97%)
 Frame = -1

Query: 1016 QDNFVPNDTNLHSDGEYCQIITGPNMGGKSCYIRQVALIAIMAQL 882
            QDNFVPNDT LH++GEYCQIITGPNMGGKSCYIRQVALI+IMAQ+
Sbjct: 795  QDNFVPNDTILHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQV 839