BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028385
         (866 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi...   328   1e-87
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]   327   2e-87
gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]   288   9e-76
ref|XP_003595043.1| Pentatricopeptide repeat-containing protein ...   288   9e-76
ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...   286   6e-75

>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
            mitochondrial-like [Vitis vinifera]
          Length = 993

 Score =  328 bits (840), Expect = 1e-87
 Identities = 163/288 (56%), Positives = 206/288 (71%)
 Frame = -2

Query: 865  LVEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNT 686
            L E + LFK+V +L +EVDE  Y  LIDG+C RG +DC F LL DMEKRGI   IVTYN+
Sbjct: 244  LDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNS 303

Query: 685  VINGLCKAGRTCEADAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDV 506
            +INGLCKAGRT EAD VSK I GD VT++T+L GYI E+NV G+LET++R+EE  V +D+
Sbjct: 304  IINGLCKAGRTSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDL 363

Query: 505  VMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDE 326
            VMCN++IKAL MVG  EDA A YK M  M+L  D+VTYC MI+GYC + R++EALE+FDE
Sbjct: 364  VMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDE 423

Query: 325  LRKTSIFSVECYSCIIHGLCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRATYHVNSA 146
             RKTSI SV CY C+I+GLCR  M DMA EVFIE +++ L L  G    L++A++    A
Sbjct: 424  FRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGA 483

Query: 145  DGILDLTRKIESLEPEIFDFSCNHVISFLYRRGCPEAACDVYFMLRSK 2
            +G+L    +IE+L  E FD   N  I FL +RG   AAC+VY  +R K
Sbjct: 484  EGVLKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRK 531



 Score = 92.4 bits (228), Expect = 1e-16
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 6/206 (2%)
 Frame = -2

Query: 865  LVEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNT 686
            +++ +KL     +    +D + Y+I+ID  C+ G LD +  L A ++K+GI L I  YN+
Sbjct: 620  ILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNS 679

Query: 685  VINGLCKAGRTCEA----DAVSK-RILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKC 521
            VINGLC+ G   +A    D++ K  ++   +TY T++    +E  +L   +  ++M  K 
Sbjct: 680  VINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKG 739

Query: 520  VQLDVVMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEAL 341
               +V + NSLI      G  E+AL +   +    + PD  T   +I+GYC  G ++ AL
Sbjct: 740  FNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGAL 799

Query: 340  EVFDELRKTSIF-SVECYSCIIHGLC 266
              F E +K  I      +  ++ GLC
Sbjct: 800  GFFFEFKKKDILPDFLGFMYLVRGLC 825



 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 42/299 (14%)
 Frame = -2

Query: 790 LIDGYCRRGFLDCSFHLLAD-MEKRGIYLGIVTYNTVINGLCKAGRTCE-ADAVS----K 629
           +I G+C+      +     + +  R +   I T   ++  L + GR  E +D VS    +
Sbjct: 93  VISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMERE 152

Query: 628 RILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVMCNSLIKALFMVGLSEDA 449
             + DVV Y++ + GY RE  ++  +   K M EK +  D V    LI      G  E A
Sbjct: 153 EFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKA 212

Query: 448 LAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVF--------------------- 332
           +   ++M    L P+ VTY  ++ G+C  G+LDEA  +F                     
Sbjct: 213 IGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDG 272

Query: 331 --------------DELRKTSIF-SVECYSCIIHGLCRMCMTDMATEVFIEFSKRALSLD 197
                         +++ K  I  S+  Y+ II+GLC+   T  A EV      + ++ D
Sbjct: 273 FCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEV-----SKGIAGD 327

Query: 196 VGMLMILLRATYHVNSADGILDLTRKIESLEPEIFDFSCNHVISFLYRRGCPEAACDVY 20
                 LL       +  GIL+  R++E     I    CN +I  L   G  E A   Y
Sbjct: 328 AVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFY 386


>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score =  327 bits (839), Expect = 2e-87
 Identities = 163/288 (56%), Positives = 206/288 (71%)
 Frame = -2

Query: 865  LVEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNT 686
            L E + LFK+V +L +EVDE  Y  LIDG+C RG +DC F LL DMEKRGI   IVTYN+
Sbjct: 244  LDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNS 303

Query: 685  VINGLCKAGRTCEADAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDV 506
            +INGLCKAGRT EAD VSK I GD VT++T+L GYI E+NV G+LET++R+EE  V +D+
Sbjct: 304  IINGLCKAGRTSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDL 363

Query: 505  VMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDE 326
            VMCN++IKAL MVG  EDA A YK M  M+L  D+VTYC MI+GYC + R++EALE+FDE
Sbjct: 364  VMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVXRIEEALEIFDE 423

Query: 325  LRKTSIFSVECYSCIIHGLCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRATYHVNSA 146
             RKTSI SV CY C+I+GLCR  M DMA EVFIE +++ L L  G    L++A++    A
Sbjct: 424  FRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGA 483

Query: 145  DGILDLTRKIESLEPEIFDFSCNHVISFLYRRGCPEAACDVYFMLRSK 2
            +G+L    +IE+L  E FD   N  I FL +RG   AAC+VY  +R K
Sbjct: 484  EGVLKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRK 531



 Score = 93.2 bits (230), Expect = 7e-17
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 6/206 (2%)
 Frame = -2

Query: 865  LVEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNT 686
            +++ +KL     +    +D + Y+I+ID  C+ G LD +  L A ++K+GI L I  YN+
Sbjct: 620  ILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNS 679

Query: 685  VINGLCKAGRTCEA----DAVSK-RILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKC 521
            VINGLC+ G   +A    D++ K  ++   +TY T++    +E  +L   +  ++M  K 
Sbjct: 680  VINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKG 739

Query: 520  VQLDVVMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEAL 341
               +V + NSLI      G  E+AL +   +    + PD  T   +I+GYC  G ++ AL
Sbjct: 740  FNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGAL 799

Query: 340  EVFDELRKTSIF-SVECYSCIIHGLC 266
              F E +K  I      +  ++ GLC
Sbjct: 800  GFFFEFKKKDILPDFLGFMYLVRGLC 825



 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 42/299 (14%)
 Frame = -2

Query: 790 LIDGYCRRGFLDCSFHLLAD-MEKRGIYLGIVTYNTVINGLCKAGRTCE-ADAVS----K 629
           +I G+C+      +     + +  R +   I T   ++  L + GR  E +D VS    +
Sbjct: 93  VISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMERE 152

Query: 628 RILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVMCNSLIKALFMVGLSEDA 449
             + DVV Y++ + GY RE  ++  +   K M EK +  D V    LI      G  E A
Sbjct: 153 EFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKA 212

Query: 448 LAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVF--------------------- 332
           +   ++M    L P+ VTY  ++ G+C  G+LDEA  +F                     
Sbjct: 213 IGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDG 272

Query: 331 --------------DELRKTSIF-SVECYSCIIHGLCRMCMTDMATEVFIEFSKRALSLD 197
                         +++ K  I  S+  Y+ II+GLC+   T  A EV      + ++ D
Sbjct: 273 FCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEV-----SKGIAGD 327

Query: 196 VGMLMILLRATYHVNSADGILDLTRKIESLEPEIFDFSCNHVISFLYRRGCPEAACDVY 20
                 LL       +  GIL+  R++E     I    CN +I  L   G  E A   Y
Sbjct: 328 AVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFY 386


>gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1053

 Score =  288 bits (738), Expect = 9e-76
 Identities = 141/286 (49%), Positives = 197/286 (68%)
 Frame = -2

Query: 859  EGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVI 680
            E F LF  ++D+ +E+DE  + +LIDG+ R G  D  F LL +MEKRGI   +VTYN V+
Sbjct: 304  EAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVV 363

Query: 679  NGLCKAGRTCEADAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVM 500
            NGL K GRT EAD  SK +  DVVTY+T+L GY  E NVLG+L+T+KR+EE  + +DVVM
Sbjct: 364  NGLSKYGRTQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVM 423

Query: 499  CNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELR 320
            CN LI+ALFM+   ED  A+YK MP+M+L P+++TYC MIDGYC +G+++EALEVFD+ R
Sbjct: 424  CNVLIRALFMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFR 483

Query: 319  KTSIFSVECYSCIIHGLCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRATYHVNSADG 140
            KTSI S  CY+ II+GLC+  M +MA E  +E   + L LD G   +L++  +  NS+  
Sbjct: 484  KTSISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKV 543

Query: 139  ILDLTRKIESLEPEIFDFSCNHVISFLYRRGCPEAACDVYFMLRSK 2
            +LDL  ++ESLE +I++  CN  I  L +RG  + A  ++  ++ K
Sbjct: 544  VLDLVCRMESLELDIYNAICNDSIFLLCKRGLLDDAYQLWMAMKKK 589



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 6/205 (2%)
 Frame = -2

Query: 862  VEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTV 683
            ++ +KL   V+D  + V  + Y ++I G C+ G+L+ +  L   +EK+G+ L IV YN++
Sbjct: 680  LDAYKLLMGVQD-DLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSI 738

Query: 682  INGLCKAGRTCEA----DAVSK-RILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCV 518
            INGLC  G   EA    D++ K  ++   +TY T++    RE  +       K+M     
Sbjct: 739  INGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGF 798

Query: 517  QLDVVMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALE 338
            Q    + NSL+ A   +G  E A  +   M    +  D  T  ++I+ YC  G ++ ALE
Sbjct: 799  QPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALE 858

Query: 337  VFDELRKTSIF-SVECYSCIIHGLC 266
             + + +   I      +  +I GLC
Sbjct: 859  FYYKFKGKDISPDFLGFLYMIRGLC 883



 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 5/244 (2%)
 Frame = -2

Query: 820 VEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVINGLCKAGR----- 656
           +++D + Y++ + GY     L   F  + +M ++GI    V+Y  +I+G  K G      
Sbjct: 212 LDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSF 271

Query: 655 TCEADAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVMCNSLIKAL 476
           T  A  + + I+ + VTY  I+  Y ++  +        RM++  ++LD  +   LI   
Sbjct: 272 TFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGF 331

Query: 475 FMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELRKTSIFSVE 296
             VG  +    +   M    + P+ VTY  +++G    GR  EA    DE  K     V 
Sbjct: 332 GRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVVNGLSKYGRTQEA----DEFSKNVTADVV 387

Query: 295 CYSCIIHGLCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRATYHVNSADGILDLTRKI 116
            YS ++HG           +      +  +S+DV M  +L+RA + + + + +  L + +
Sbjct: 388 TYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAYEDVYALYKGM 447

Query: 115 ESLE 104
             ++
Sbjct: 448 PEMD 451



 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 6/212 (2%)
 Frame = -2

Query: 811 DEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVINGLCKAGRTCEADAVS 632
           D+   + ++  + R G  + S     +    G    +VTY  V+N LCK GR  E   + 
Sbjct: 147 DDFVCSSVVSAFSRAGKPELSLWFFDNF--MGSRPNLVTYTAVVNALCKLGRVDEVCGLV 204

Query: 631 KRILGD-----VVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVMCNSLIKALFMV 467
           +++  D     VV Y+  + GY+ E+ ++ +    + M EK +  D V    LI     +
Sbjct: 205 RKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKL 264

Query: 466 GLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELRKTSIFSVE-CY 290
           G  E +     +M    + P+ VTY  ++  YC  GR++EA  +F  ++   I   E  +
Sbjct: 265 GDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVF 324

Query: 289 SCIIHGLCRMCMTDMATEVFIEFSKRALSLDV 194
             +I G  R+   D   ++ +E  KR +  +V
Sbjct: 325 VVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNV 356



 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
 Frame = -2

Query: 865  LVEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNT 686
            L +   L  L+    V ++ + Y  +I+G C  G L  +F L   +EK  +    +TY T
Sbjct: 713  LNKALDLCTLIEKKGVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYAT 772

Query: 685  VINGLCKAGRTCEADAVSKRIL-----GDVVTYNTILQGYIREQNVLGMLETRKRMEEKC 521
            +I  LC+ G   +A+ V K+++          YN++L    +   +    E    ME++ 
Sbjct: 773  LIYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQY 832

Query: 520  VQLDVVMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEAL 341
            ++ D    +S+I      G  E AL  Y +    +++PD + +  MI G C  GR++E  
Sbjct: 833  IKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETR 892

Query: 340  EVFDEL 323
             V  E+
Sbjct: 893  SVLREM 898



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
 Frame = -2

Query: 865  LVEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNT 686
            L+E F+LF  +  L +   EITYA LI   CR G+L  + H+   M   G       YN+
Sbjct: 748  LIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNS 807

Query: 685  VINGLCKAGRTCEA-----DAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKC 521
            ++    K G+  +A     D   + I  D  T ++++  Y ++ ++ G LE   + + K 
Sbjct: 808  LLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKD 867

Query: 520  VQLDVVMCNSLIKALFMVGLSEDALAVYKRMPD----------MNLTPDAVTYCNMIDGY 371
            +  D +    +I+ L   G  E+  +V + M            +N   D  + C+ I   
Sbjct: 868  ISPDFLGFLYMIRGLCTKGRMEETRSVLREMLQSKNVAEMINIVNSRVDTESICDFIAAL 927

Query: 370  CGIGRLDEALEVFD 329
            C  GR+ EA++V +
Sbjct: 928  CDQGRIQEAVKVLN 941



 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
 Frame = -2

Query: 853 FKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVING 674
           + L+K + ++ +  + ITY  +IDGYC+ G ++ +  +  D  K  I      YN++ING
Sbjct: 441 YALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFRKTSIS-SYACYNSIING 499

Query: 673 LCKAGRTCEA-----DAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLD 509
           LCK G    A     +   K ++ D  T+  +++   +E +   +L+   RME   + + 
Sbjct: 500 LCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKVVLDLVCRMESLELDIY 559

Query: 508 VVMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDG-YCGIGRLDEALEVF 332
             +CN  I  L   GL +DA  ++  M    L     +Y +++    C +G  ++ L + 
Sbjct: 560 NAICNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRRLLCVVGNREQILPLL 619

Query: 331 D 329
           +
Sbjct: 620 N 620


>ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355484091|gb|AES65294.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 1070

 Score =  288 bits (738), Expect = 9e-76
 Identities = 141/286 (49%), Positives = 197/286 (68%)
 Frame = -2

Query: 859  EGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVI 680
            E F LF  ++D+ +E+DE  + +LIDG+ R G  D  F LL +MEKRGI   +VTYN V+
Sbjct: 321  EAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVV 380

Query: 679  NGLCKAGRTCEADAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVM 500
            NGL K GRT EAD  SK +  DVVTY+T+L GY  E NVLG+L+T+KR+EE  + +DVVM
Sbjct: 381  NGLSKYGRTQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVM 440

Query: 499  CNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELR 320
            CN LI+ALFM+   ED  A+YK MP+M+L P+++TYC MIDGYC +G+++EALEVFD+ R
Sbjct: 441  CNVLIRALFMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFR 500

Query: 319  KTSIFSVECYSCIIHGLCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRATYHVNSADG 140
            KTSI S  CY+ II+GLC+  M +MA E  +E   + L LD G   +L++  +  NS+  
Sbjct: 501  KTSISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKV 560

Query: 139  ILDLTRKIESLEPEIFDFSCNHVISFLYRRGCPEAACDVYFMLRSK 2
            +LDL  ++ESLE +I++  CN  I  L +RG  + A  ++  ++ K
Sbjct: 561  VLDLVCRMESLELDIYNAICNDSIFLLCKRGLLDDAYQLWMAMKKK 606



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 6/205 (2%)
 Frame = -2

Query: 862  VEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTV 683
            ++ +KL   V+D  + V  + Y ++I G C+ G+L+ +  L   +EK+G+ L IV YN++
Sbjct: 697  LDAYKLLMGVQD-DLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSI 755

Query: 682  INGLCKAGRTCEA----DAVSK-RILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCV 518
            INGLC  G   EA    D++ K  ++   +TY T++    RE  +       K+M     
Sbjct: 756  INGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGF 815

Query: 517  QLDVVMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALE 338
            Q    + NSL+ A   +G  E A  +   M    +  D  T  ++I+ YC  G ++ ALE
Sbjct: 816  QPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALE 875

Query: 337  VFDELRKTSIF-SVECYSCIIHGLC 266
             + + +   I      +  +I GLC
Sbjct: 876  FYYKFKGKDISPDFLGFLYMIRGLC 900



 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 5/244 (2%)
 Frame = -2

Query: 820 VEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVINGLCKAGR----- 656
           +++D + Y++ + GY     L   F  + +M ++GI    V+Y  +I+G  K G      
Sbjct: 229 LDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSF 288

Query: 655 TCEADAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVMCNSLIKAL 476
           T  A  + + I+ + VTY  I+  Y ++  +        RM++  ++LD  +   LI   
Sbjct: 289 TFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGF 348

Query: 475 FMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELRKTSIFSVE 296
             VG  +    +   M    + P+ VTY  +++G    GR  EA    DE  K     V 
Sbjct: 349 GRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVVNGLSKYGRTQEA----DEFSKNVTADVV 404

Query: 295 CYSCIIHGLCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRATYHVNSADGILDLTRKI 116
            YS ++HG           +      +  +S+DV M  +L+RA + + + + +  L + +
Sbjct: 405 TYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAYEDVYALYKGM 464

Query: 115 ESLE 104
             ++
Sbjct: 465 PEMD 468



 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 6/212 (2%)
 Frame = -2

Query: 811 DEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVINGLCKAGRTCEADAVS 632
           D+   + ++  + R G  + S     +    G    +VTY  V+N LCK GR  E   + 
Sbjct: 164 DDFVCSSVVSAFSRAGKPELSLWFFDNF--MGSRPNLVTYTAVVNALCKLGRVDEVCGLV 221

Query: 631 KRILGD-----VVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVMCNSLIKALFMV 467
           +++  D     VV Y+  + GY+ E+ ++ +    + M EK +  D V    LI     +
Sbjct: 222 RKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKL 281

Query: 466 GLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELRKTSIFSVE-CY 290
           G  E +     +M    + P+ VTY  ++  YC  GR++EA  +F  ++   I   E  +
Sbjct: 282 GDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVF 341

Query: 289 SCIIHGLCRMCMTDMATEVFIEFSKRALSLDV 194
             +I G  R+   D   ++ +E  KR +  +V
Sbjct: 342 VVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNV 373



 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
 Frame = -2

Query: 865  LVEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNT 686
            L +   L  L+    V ++ + Y  +I+G C  G L  +F L   +EK  +    +TY T
Sbjct: 730  LNKALDLCTLIEKKGVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYAT 789

Query: 685  VINGLCKAGRTCEADAVSKRIL-----GDVVTYNTILQGYIREQNVLGMLETRKRMEEKC 521
            +I  LC+ G   +A+ V K+++          YN++L    +   +    E    ME++ 
Sbjct: 790  LIYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQY 849

Query: 520  VQLDVVMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEAL 341
            ++ D    +S+I      G  E AL  Y +    +++PD + +  MI G C  GR++E  
Sbjct: 850  IKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETR 909

Query: 340  EVFDEL 323
             V  E+
Sbjct: 910  SVLREM 915



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
 Frame = -2

Query: 865  LVEGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNT 686
            L+E F+LF  +  L +   EITYA LI   CR G+L  + H+   M   G       YN+
Sbjct: 765  LIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNS 824

Query: 685  VINGLCKAGRTCEA-----DAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKC 521
            ++    K G+  +A     D   + I  D  T ++++  Y ++ ++ G LE   + + K 
Sbjct: 825  LLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKD 884

Query: 520  VQLDVVMCNSLIKALFMVGLSEDALAVYKRMPD----------MNLTPDAVTYCNMIDGY 371
            +  D +    +I+ L   G  E+  +V + M            +N   D  + C+ I   
Sbjct: 885  ISPDFLGFLYMIRGLCTKGRMEETRSVLREMLQSKNVAEMINIVNSRVDTESICDFIAAL 944

Query: 370  CGIGRLDEALEVFD 329
            C  GR+ EA++V +
Sbjct: 945  CDQGRIQEAVKVLN 958



 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
 Frame = -2

Query: 853 FKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVING 674
           + L+K + ++ +  + ITY  +IDGYC+ G ++ +  +  D  K  I      YN++ING
Sbjct: 458 YALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFRKTSIS-SYACYNSIING 516

Query: 673 LCKAGRTCEA-----DAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLD 509
           LCK G    A     +   K ++ D  T+  +++   +E +   +L+   RME   + + 
Sbjct: 517 LCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKVVLDLVCRMESLELDIY 576

Query: 508 VVMCNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDG-YCGIGRLDEALEVF 332
             +CN  I  L   GL +DA  ++  M    L     +Y +++    C +G  ++ L + 
Sbjct: 577 NAICNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRRLLCVVGNREQILPLL 636

Query: 331 D 329
           +
Sbjct: 637 N 637


>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score =  286 bits (731), Expect = 6e-75
 Identities = 135/285 (47%), Positives = 203/285 (71%), Gaps = 1/285 (0%)
 Frame = -2

Query: 859  EGFKLFKLVRDLRVEVDEITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVI 680
            E F +FKLV +L +++DE  YAIL+DG+C +G  D ++ L+ +MEK+GI   IV YN +I
Sbjct: 343  EAFAIFKLVENLGIKLDEFIYAILVDGFCLKGDFDRAYQLIEEMEKKGITPTIVAYNILI 402

Query: 679  NGLCKAGRTCEADAVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVM 500
            N LCKAGRT +AD VSK + GD +TY+ +L GYI+E+N +G+LE R+R+EE  +Q+D++M
Sbjct: 403  NSLCKAGRTFDADEVSKALQGDKITYSALLHGYIKEENSIGILEVRQRLEEARIQMDIIM 462

Query: 499  CNSLIKALFMVGLSEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELR 320
             N ++KALF+VG  ED L +Y  M +MNL  +++TYC +I G+C +GR+DEALE+FDE R
Sbjct: 463  FNIILKALFVVGAFEDVLVLYNGMQEMNLVANSITYCTIIGGFCKVGRIDEALEIFDEFR 522

Query: 319  KTSIFSVECYSCIIHGLCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRATYHVNSADG 140
                 SV CY+C+I+GLC+  M DMA E+F+E  ++ L+LD+G+ M L++A     SADG
Sbjct: 523  HGLGSSVACYNCMINGLCKNGMVDMAAEIFVELIEKGLTLDIGICMTLIKAIVKEKSADG 582

Query: 139  ILDLTRKIESLEPEIFDFSC-NHVISFLYRRGCPEAACDVYFMLR 8
            +LDL  +I+++  + +D +  N+ +S L +R    AA +VY + R
Sbjct: 583  VLDLIYRIQNIGSDKYDSTVWNYAMSLLSKRKFSMAASEVYMVAR 627



 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 65/268 (24%), Positives = 123/268 (45%), Gaps = 6/268 (2%)
 Frame = -2

Query: 805  ITYAILIDGYCRRGFLDCSFHLLADMEKRGIYLGIVTYNTVINGLCKAGRTCEA-----D 641
            +TY  ++   C  G  D  F L+ +ME+ G+   +V Y+  I G  + G   EA     +
Sbjct: 221  VTYTAVVSSLCMLGRADEVFDLVCEMEEEGLAFDVVFYSCWICGYFRNGVFIEAIRKHKE 280

Query: 640  AVSKRILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVMCNSLIKALFMVGL 461
             V K I  D + Y  ++ G+ +E +V   +     M     + ++V   ++I      G 
Sbjct: 281  MVKKGISSDTIGYTILIDGFSKEGSVEKSVGFLHHMLANGSEPNLVTYTAIILGFCRKGK 340

Query: 460  SEDALAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELRKTSIF-SVECYSC 284
             ++A A++K + ++ +  D   Y  ++DG+C  G  D A ++ +E+ K  I  ++  Y+ 
Sbjct: 341  IDEAFAIFKLVENLGIKLDEFIYAILVDGFCLKGDFDRAYQLIEEMEKKGITPTIVAYNI 400

Query: 283  IIHGLCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRATYHVNSADGILDLTRKIESLE 104
            +I+ LC+   T  A EV      +AL  D      LL       ++ GIL++ +++E   
Sbjct: 401  LINSLCKAGRTFDADEV-----SKALQGDKITYSALLHGYIKEENSIGILEVRQRLEEAR 455

Query: 103  PEIFDFSCNHVISFLYRRGCPEAACDVY 20
             ++     N ++  L+  G  E    +Y
Sbjct: 456  IQMDIIMFNIILKALFVVGAFEDVLVLY 483



 Score = 73.2 bits (178), Expect = 7e-11
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 7/215 (3%)
 Frame = -2

Query: 790 LIDGYCRRGFLDCSFHLLADMEKRG-IYLGIVTYNTVINGLCKAGRTCEA-----DAVSK 629
           ++ G+C+ G  + +     +  K G +   +VTY  V++ LC  GR  E      +   +
Sbjct: 190 IVSGFCKMGKPELAMGFFENSLKLGALKPNLVTYTAVVSSLCMLGRADEVFDLVCEMEEE 249

Query: 628 RILGDVVTYNTILQGYIREQNVLGMLETRKRMEEKCVQLDVVMCNSLIKALFMVGLSEDA 449
            +  DVV Y+  + GY R    +  +   K M +K +  D +    LI      G  E +
Sbjct: 250 GLAFDVVFYSCWICGYFRNGVFIEAIRKHKEMVKKGISSDTIGYTILIDGFSKEGSVEKS 309

Query: 448 LAVYKRMPDMNLTPDAVTYCNMIDGYCGIGRLDEALEVFDELRKTSIFSVE-CYSCIIHG 272
           +     M      P+ VTY  +I G+C  G++DEA  +F  +    I   E  Y+ ++ G
Sbjct: 310 VGFLHHMLANGSEPNLVTYTAIILGFCRKGKIDEAFAIFKLVENLGIKLDEFIYAILVDG 369

Query: 271 LCRMCMTDMATEVFIEFSKRALSLDVGMLMILLRA 167
            C     D A ++  E  K+ ++  +    IL+ +
Sbjct: 370 FCLKGDFDRAYQLIEEMEKKGITPTIVAYNILINS 404