BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028379
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_10246603.1| putative RNA-directed DNA polymerase [Nitrola...   184   6e-45
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   182   3e-44
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             181   7e-44
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             176   2e-42
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   176   2e-42

>ref|ZP_10246603.1| putative RNA-directed DNA polymerase [Nitrolancetus hollandicus Lb]
           gi|390170668|emb|CCF85946.1| putative RNA-directed DNA
           polymerase [Nitrolancetus hollandicus Lb]
          Length = 178

 Score =  184 bits (467), Expect = 6e-45
 Identities = 86/122 (70%), Positives = 104/122 (85%)
 Frame = +3

Query: 3   NGKWRMCIDFSDLNEACPKDDYPLPSIDVLIDATAGHELLSFMDAFSGYNQIRMTEEDIP 182
           NGK R+CIDF+DLN+ACPKD +PLP ID L+++TAG+ELL+FMDAFSGYNQI M  ED  
Sbjct: 17  NGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGYNQIMMNPEDQE 76

Query: 183 KVSFITDFGLFCYVVLAFGLRNAGATYQRLVNKIFKHLIGKTMEVYVDDMLVKSTTKTDH 362
           K SFITD G++CY V+ FGL+NAGATYQRLVNK+F + +GKTMEVY+DDMLVKS  K DH
Sbjct: 77  KTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDH 136

Query: 363 LK 368
           +K
Sbjct: 137 VK 138


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  182 bits (461), Expect = 3e-44
 Identities = 85/122 (69%), Positives = 101/122 (82%)
 Frame = +3

Query: 3   NGKWRMCIDFSDLNEACPKDDYPLPSIDVLIDATAGHELLSFMDAFSGYNQIRMTEEDIP 182
           NGK R+CIDF+DLN+ACPKD +PLP ID L+++TAG+ELLSFMDAFSGYNQI M  ED  
Sbjct: 512 NGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQE 571

Query: 183 KVSFITDFGLFCYVVLAFGLRNAGATYQRLVNKIFKHLIGKTMEVYVDDMLVKSTTKTDH 362
           K  FITD G++CY V+ FGLRNAGATY RLVNK+F   +GKTMEVY+DDML+KS  K DH
Sbjct: 572 KTLFITDRGIYCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDH 631

Query: 363 LK 368
           +K
Sbjct: 632 VK 633


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  181 bits (458), Expect = 7e-44
 Identities = 85/122 (69%), Positives = 103/122 (84%)
 Frame = +3

Query: 3   NGKWRMCIDFSDLNEACPKDDYPLPSIDVLIDATAGHELLSFMDAFSGYNQIRMTEEDIP 182
           NGK R+CIDF+DLN+ACPKD +PLP ID L+++TAG+ELL+FMDAFSG NQI M  ED  
Sbjct: 69  NGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGSNQIMMNPEDQE 128

Query: 183 KVSFITDFGLFCYVVLAFGLRNAGATYQRLVNKIFKHLIGKTMEVYVDDMLVKSTTKTDH 362
           K SFITD G++CY V+ FGL+NAGATYQRLVNK+F + +GKTMEVY+DDMLVKS  K DH
Sbjct: 129 KTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDH 188

Query: 363 LK 368
           +K
Sbjct: 189 VK 190


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  176 bits (446), Expect = 2e-42
 Identities = 79/122 (64%), Positives = 101/122 (82%)
 Frame = +3

Query: 3    NGKWRMCIDFSDLNEACPKDDYPLPSIDVLIDATAGHELLSFMDAFSGYNQIRMTEEDIP 182
            NGKWR+C+D++DLN+ACPKD YPLP ID L++AT+G+ LLSFMDAFSGYNQI M ++D  
Sbjct: 872  NGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQE 931

Query: 183  KVSFITDFGLFCYVVLAFGLRNAGATYQRLVNKIFKHLIGKTMEVYVDDMLVKSTTKTDH 362
            K SF+TD G +CY V++FGL+NAGATYQR VNK+    IG+T+EVY+DDMLVKS    DH
Sbjct: 932  KTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDH 991

Query: 363  LK 368
            ++
Sbjct: 992  VE 993


>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  176 bits (445), Expect = 2e-42
 Identities = 82/118 (69%), Positives = 95/118 (80%)
 Frame = +3

Query: 15   RMCIDFSDLNEACPKDDYPLPSIDVLIDATAGHELLSFMDAFSGYNQIRMTEEDIPKVSF 194
            RMC+DF+DLN+ACPKD +PL  ID L+D+TAGH LLSFMD FSGYNQI M E+D    +F
Sbjct: 831  RMCVDFTDLNKACPKDSFPLQKIDQLVDSTAGHSLLSFMDTFSGYNQIPMDEQDEESTTF 890

Query: 195  ITDFGLFCYVVLAFGLRNAGATYQRLVNKIFKHLIGKTMEVYVDDMLVKSTTKTDHLK 368
            IT+ GLFCY V+ FGL+N GATYQRLVNKIFK LIG TMEVYVDDM+ KS    DH+K
Sbjct: 891  ITNIGLFCYRVMPFGLKNTGATYQRLVNKIFKPLIGHTMEVYVDDMITKSKKPKDHVK 948