BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028356
         (895 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|2...   159   8e-37
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       157   2e-36
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   155   9e-36
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           153   5e-35
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   153   5e-35

>ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|222874272|gb|EEF11403.1|
            predicted protein [Populus trichocarpa]
          Length = 503

 Score =  159 bits (402), Expect = 8e-37
 Identities = 98/304 (32%), Positives = 157/304 (51%), Gaps = 8/304 (2%)
 Frame = -2

Query: 888  FLHRGLSDHSPSGVSLGIPGQRIKRPFQFFNYLVSDPLFLEEVSKAWSIPVDGNAWFVLT 709
            FL  G+SDHSP  V +    Q IK+PF+FF+      +++++ S        G   + L 
Sbjct: 203  FLPSGISDHSPMVVKVIGNDQNIKKPFRFFD------MWMDQNS-------GGCPMYQLC 249

Query: 708  TKLKSVKLRMIELNRRK-GNLQAAVVNSREALYNFQDSLPPI---PSVSQREEELKLADV 541
              LK +K  +   N     N+   V +++  +   Q +L      P +  RE ++     
Sbjct: 250  CNLKKLKQELKLFNMAHFSNISDRVKDAKNEMDKAQQALHTAHENPILCMRERDV--VHK 307

Query: 540  YKSALECEEQLLRQKSRVNWLKHGDGNNSYFFNACKNRWNINKILALSTESGEIVTSHSD 361
            Y S +  EE   +QK+R+ WL  GD N SYF  +   R N NK+L+L+ E GE+V  H  
Sbjct: 308  YASTVRAEESFFKQKARIQWLSLGDQNTSYFHKSVNGRHNRNKLLSLTREDGEVVEGHEA 367

Query: 360  IAATAVSYYESLLGIERPV----EDLPSDLVMPRLSDVQSARLMAPITESEILNALKSMP 193
            + +  ++Y+  +LG+++      E++    +  +LS  Q   L   +T  EI +A+ S+ 
Sbjct: 368  VKSEVIAYFHRVLGVDQMPRVLNEEVMESAINLKLSSTQQHVLAQVVTRKEIKHAMFSLK 427

Query: 192  NNKSPGPDGFTKEFFLAAWTVIGTDVINGILSFFHNLSLPNIVSATAIALIPKCDTPTAM 13
            NNK+PG DGF   FF   W ++G DVIN + S F    +   ++AT+I+LIPK   PT +
Sbjct: 428  NNKAPGLDGFNAGFFKRMWHIVGEDVINAVRSLFQTRRMLKEMNATSISLIPKVANPTRL 487

Query: 12   THYR 1
            T +R
Sbjct: 488  TDFR 491


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  157 bits (398), Expect = 2e-36
 Identities = 104/296 (35%), Positives = 151/296 (51%), Gaps = 6/296 (2%)
 Frame = -2

Query: 870  SDHSPSGVSLGIPGQRIKRPFQFFNYLVSDPLFLEEVSKAW-SIPVDGNAWFVLTTKLKS 694
            SDH   GV L     + KRPF+FFNYL+ +  FL  V   W ++ V G++ F ++ KLK+
Sbjct: 229  SDHVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKA 288

Query: 693  VKLRMIELNRRK-GNLQAAVVNSREALYNFQDSLPPIPSVSQREEELKLADVYKSALECE 517
            +K  + + +R     L+     + + L   QD     P+      EL+    +      E
Sbjct: 289  LKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAERKWHILTAAE 348

Query: 516  EQLLRQKSRVNWLKHGDGNNSYFFNACKNRWNINKILALSTESGEIVTSHSDIAATAVSY 337
            E   RQKSR++W   GDGN  YF      R + N I AL   +G++V S   I     SY
Sbjct: 349  ESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASY 408

Query: 336  YESLLGIERP---VEDLPSDLVMP-RLSDVQSARLMAPITESEILNALKSMPNNKSPGPD 169
            + SLLG E     +E    +L++  R S  Q   L +  +  +I  AL S+P NKS GPD
Sbjct: 409  FGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPD 468

Query: 168  GFTKEFFLAAWTVIGTDVINGILSFFHNLSLPNIVSATAIALIPKCDTPTAMTHYR 1
            GFT EFF+ +W+++G +V + I  FF +  L    +AT I LIPK   PT  + +R
Sbjct: 469  GFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFR 524


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  155 bits (393), Expect = 9e-36
 Identities = 101/299 (33%), Positives = 152/299 (50%), Gaps = 9/299 (3%)
 Frame = -2

Query: 870  SDHSPSGVSLGIPGQRIKRPFQFFNYLVSDPLFLEEVSKAW-SIPVDGNAWFVLTTKLKS 694
            SDHS   +SL     R K+PF+F N+L+ D  FL  +   W S  V G+A + ++ KLK+
Sbjct: 126  SDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKA 185

Query: 693  VKLRMIELNRRK-GNLQAAVVNSREALYNFQDSLPPIPSVSQREEELKLADVYKSALECE 517
            +K  + + +R    +++     + +AL   Q  L   P  S    E +    ++   E E
Sbjct: 186  LKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQRKWRILAEAE 245

Query: 516  EQLLRQKSRVNWLKHGDGNNSYFFNACKNRWNINKILALSTESGEIVTSHSDIAATAVSY 337
                 Q+SRVNWL+ GD N+SYF      R ++N I  LS   G+ +    ++    V Y
Sbjct: 246  ASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEY 305

Query: 336  YESLLGIERPVEDLP-------SDLVMPRLSDVQSARLMAPITESEILNALKSMPNNKSP 178
            ++S LG E   + LP       S+L+  R S  Q   L  P +  +I NA  S+P NK+ 
Sbjct: 306  FQSNLGSE---QGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKAS 362

Query: 177  GPDGFTKEFFLAAWTVIGTDVINGILSFFHNLSLPNIVSATAIALIPKCDTPTAMTHYR 1
            GPDGF+ EFF A W +IG +V   I  FF +  L    +AT + LIPK    ++M+ +R
Sbjct: 363  GPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFR 421


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  153 bits (387), Expect = 5e-35
 Identities = 102/296 (34%), Positives = 148/296 (50%), Gaps = 6/296 (2%)
 Frame = -2

Query: 870 SDHSPSGVSLGIPGQRIKRPFQFFNYLVSDPLFLEEVSKAW-SIPVDGNAWFVLTTKLKS 694
           SDH   GV L   G   KRPF+FFN+L+ +  FL  V   W S  V G++ + ++ KLK+
Sbjct: 89  SDHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKA 148

Query: 693 VKLRMIELNRRK-GNLQAAVVNSREALYNFQDSLPPIPSVSQREEELKLADVYKSALECE 517
           +K  + + +R     ++     + E L   Q+     PSVS    EL+    +      E
Sbjct: 149 MKKPIKDFSRLNYSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCAE 208

Query: 516 EQLLRQKSRVNWLKHGDGNNSYFFNACKNRWNINKILALSTESGEIVTSHSDIAATAVSY 337
           E    Q+SRV+W   GD N  YF     +R + N I +L   +G ++ S   I    V+Y
Sbjct: 209 ESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTY 268

Query: 336 YESLLG-IERPVEDLPSD---LVMPRLSDVQSARLMAPITESEILNALKSMPNNKSPGPD 169
           YE LLG IE P      D   L+  R S  Q + L    T+ EI  A KS+P NK+ GPD
Sbjct: 269 YERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPD 328

Query: 168 GFTKEFFLAAWTVIGTDVINGILSFFHNLSLPNIVSATAIALIPKCDTPTAMTHYR 1
           G++ EFF   W++IG +V+  I  FF +  L    +AT + LIPK      ++ +R
Sbjct: 329 GYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFR 384


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score =  153 bits (387), Expect = 5e-35
 Identities = 102/296 (34%), Positives = 148/296 (50%), Gaps = 6/296 (2%)
 Frame = -2

Query: 870 SDHSPSGVSLGIPGQRIKRPFQFFNYLVSDPLFLEEVSKAW-SIPVDGNAWFVLTTKLKS 694
           SDH   GV L   G   KRPF+FFN+L+ +  FL  V   W S  V G++ + ++ KLK+
Sbjct: 89  SDHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKA 148

Query: 693 VKLRMIELNRRK-GNLQAAVVNSREALYNFQDSLPPIPSVSQREEELKLADVYKSALECE 517
           +K  + + +R     ++     + E L   Q+     PSVS    EL+    +      E
Sbjct: 149 MKKPIKDFSRLNYSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCAE 208

Query: 516 EQLLRQKSRVNWLKHGDGNNSYFFNACKNRWNINKILALSTESGEIVTSHSDIAATAVSY 337
           E    Q+SRV+W   GD N  YF     +R + N I +L   +G ++ S   I    V+Y
Sbjct: 209 ESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTY 268

Query: 336 YESLLG-IERPVEDLPSD---LVMPRLSDVQSARLMAPITESEILNALKSMPNNKSPGPD 169
           YE LLG IE P      D   L+  R S  Q + L    T+ EI  A KS+P NK+ GPD
Sbjct: 269 YERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPD 328

Query: 168 GFTKEFFLAAWTVIGTDVINGILSFFHNLSLPNIVSATAIALIPKCDTPTAMTHYR 1
           G++ EFF   W++IG +V+  I  FF +  L    +AT + LIPK      ++ +R
Sbjct: 329 GYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFR 384