BLASTX nr result
ID: Bupleurum21_contig00028262
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00028262
(1020 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat... 504 e-140
emb|CBI23791.3| unnamed protein product [Vitis vinifera] 504 e-140
ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat... 483 e-134
ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containi... 483 e-134
ref|XP_003603587.1| Pentatricopeptide repeat-containing protein ... 320 5e-85
>ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 504 bits (1299), Expect = e-140
Identities = 247/337 (73%), Positives = 283/337 (83%)
Frame = +3
Query: 9 CGHLNDAWKVFDQMAVRDNSSWNALIAGYMKEGMFNFAEDLFRRMPNRNIVSWTAMISGY 188
CG + DA K+FD+M VRD +SWNALIAGYMKEG AEDLF RM +RNIVSWTAMISGY
Sbjct: 229 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 288
Query: 189 TQNGLADRALGLFDEMTDERSAMKPNWVTIVSVLPACAHSAALERGRKIHSYASEMGLDS 368
TQNG A++ALGLFDEM + S MKPNWVTIVSVLPACA SAALERGR+IH +A+ +GL
Sbjct: 289 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 348
Query: 369 NSNVQSALIAMYAKCGSLADAQYYFERIHPSEKRLDAWNTMITAYASHGRGTEAVSSFEN 548
NS+VQ+AL MYAKC SL +A+ F+ I + K L AWNTMITAYASHG G EAVS FEN
Sbjct: 349 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 408
Query: 549 MIRAGVQPDEVTFTGLLSGCSHSGLVDVGLEYFNCMSTTYFVEPRYEHYACVVDILGRAG 728
M+RAGVQPD VTF GLLSGCSHSGL+D GL +FN M T + VEPR EHYACVVD+LGRAG
Sbjct: 409 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 468
Query: 729 RLVEAYYLISRMPMQAGGSIWGALLAASRKHRNLEFAEISAKKLFILEPNNSGNYILLSN 908
RLVEA LIS+MPMQAG S+WGALLAA R HRNLE AE++A++LF+LEP+NSGNY+LLSN
Sbjct: 469 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSN 528
Query: 909 MYAQAGMWEEVNNLRALLKFQGLKKSPGCSWIEANGK 1019
+YA+AGMWEEV LRALLK+QG+KKSPGCSWIE NGK
Sbjct: 529 LYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGK 565
Score = 72.0 bits (175), Expect = 2e-10
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 1/193 (0%)
Frame = +3
Query: 81 LIAGYMKEGMFNFAEDLFRRMPNRNIVSWTAMISGYTQNGLADRALGLFDEMTDERS-AM 257
++A Y G + A +F R+ N + + + ++I YT++G + +
Sbjct: 118 MVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGL 177
Query: 258 KPNWVTIVSVLPACAHSAALERGRKIHSYASEMGLDSNSNVQSALIAMYAKCGSLADAQY 437
+ T+ VL +CA + + GR +H +GL+ + V ++LI MY KCG + DA+
Sbjct: 178 LGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARK 237
Query: 438 YFERIHPSEKRLDAWNTMITAYASHGRGTEAVSSFENMIRAGVQPDEVTFTGLLSGCSHS 617
F+++ + + +WN +I Y G A FE M + V++T ++SG + +
Sbjct: 238 LFDKM--IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSWTAMISGYTQN 291
Query: 618 GLVDVGLEYFNCM 656
G + L F+ M
Sbjct: 292 GFAEQALGLFDEM 304
>emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 504 bits (1299), Expect = e-140
Identities = 247/337 (73%), Positives = 283/337 (83%)
Frame = +3
Query: 9 CGHLNDAWKVFDQMAVRDNSSWNALIAGYMKEGMFNFAEDLFRRMPNRNIVSWTAMISGY 188
CG + DA K+FD+M VRD +SWNALIAGYMKEG AEDLF RM +RNIVSWTAMISGY
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214
Query: 189 TQNGLADRALGLFDEMTDERSAMKPNWVTIVSVLPACAHSAALERGRKIHSYASEMGLDS 368
TQNG A++ALGLFDEM + S MKPNWVTIVSVLPACA SAALERGR+IH +A+ +GL
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274
Query: 369 NSNVQSALIAMYAKCGSLADAQYYFERIHPSEKRLDAWNTMITAYASHGRGTEAVSSFEN 548
NS+VQ+AL MYAKC SL +A+ F+ I + K L AWNTMITAYASHG G EAVS FEN
Sbjct: 275 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334
Query: 549 MIRAGVQPDEVTFTGLLSGCSHSGLVDVGLEYFNCMSTTYFVEPRYEHYACVVDILGRAG 728
M+RAGVQPD VTF GLLSGCSHSGL+D GL +FN M T + VEPR EHYACVVD+LGRAG
Sbjct: 335 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394
Query: 729 RLVEAYYLISRMPMQAGGSIWGALLAASRKHRNLEFAEISAKKLFILEPNNSGNYILLSN 908
RLVEA LIS+MPMQAG S+WGALLAA R HRNLE AE++A++LF+LEP+NSGNY+LLSN
Sbjct: 395 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSN 454
Query: 909 MYAQAGMWEEVNNLRALLKFQGLKKSPGCSWIEANGK 1019
+YA+AGMWEEV LRALLK+QG+KKSPGCSWIE NGK
Sbjct: 455 LYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGK 491
Score = 64.3 bits (155), Expect = 5e-08
Identities = 38/128 (29%), Positives = 66/128 (51%)
Frame = +3
Query: 273 TIVSVLPACAHSAALERGRKIHSYASEMGLDSNSNVQSALIAMYAKCGSLADAQYYFERI 452
T+ VL +CA + + GR +H +GL+ + V ++LI MY KCG + DA+ F+++
Sbjct: 109 TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 168
Query: 453 HPSEKRLDAWNTMITAYASHGRGTEAVSSFENMIRAGVQPDEVTFTGLLSGCSHSGLVDV 632
+ + +WN +I Y G A FE M + V++T ++SG + +G +
Sbjct: 169 --IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSWTAMISGYTQNGFAEQ 222
Query: 633 GLEYFNCM 656
L F+ M
Sbjct: 223 ALGLFDEM 230
>ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 483 bits (1242), Expect = e-134
Identities = 231/337 (68%), Positives = 275/337 (81%)
Frame = +3
Query: 9 CGHLNDAWKVFDQMAVRDNSSWNALIAGYMKEGMFNFAEDLFRRMPNRNIVSWTAMISGY 188
CG +NDA KVFD M +RD SSWNAL+AGY K G + A +F RMP RNIVSWT MISGY
Sbjct: 182 CGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGY 241
Query: 189 TQNGLADRALGLFDEMTDERSAMKPNWVTIVSVLPACAHSAALERGRKIHSYASEMGLDS 368
+Q+GLA +AL LFDEM E S ++PNWVTI+SVLPACA + LERGR+IH A MGL+S
Sbjct: 242 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS 301
Query: 369 NSNVQSALIAMYAKCGSLADAQYYFERIHPSEKRLDAWNTMITAYASHGRGTEAVSSFEN 548
N++V AL AMYAKCGSL DA+ F++++ +EK L AWNTMITAYAS+G G +AVS+F
Sbjct: 302 NASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFRE 361
Query: 549 MIRAGVQPDEVTFTGLLSGCSHSGLVDVGLEYFNCMSTTYFVEPRYEHYACVVDILGRAG 728
MI+AG+QPD++TFTGLLSGCSHSGLVDVGL+YFN MSTTY + PR EHYACV D+LGRAG
Sbjct: 362 MIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAG 421
Query: 729 RLVEAYYLISRMPMQAGGSIWGALLAASRKHRNLEFAEISAKKLFILEPNNSGNYILLSN 908
RL EA L+ MPM AG SIWG+LLAA RKHRNLE AE +A+KLF+LEP N+GNY+LLSN
Sbjct: 422 RLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSN 481
Query: 909 MYAQAGMWEEVNNLRALLKFQGLKKSPGCSWIEANGK 1019
MYA+AG W+EV+ LRA++K QG KKSPGCSWIE NGK
Sbjct: 482 MYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGK 518
Score = 66.2 bits (160), Expect = 1e-08
Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 7/258 (2%)
Frame = +3
Query: 174 MISGYTQNGLADRALGLFDEMTDERSAMKPNWVTIVSVLPACAHSAALERGRKIHSYASE 353
M++ Y +G D ++ +F+ + D + T VL + ++ G+ +H
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIGD--------YFTFPFVLKSSVELLSVWMGKCVHGLILR 162
Query: 354 MGLDSNSNVQSALIAMYAKCGSLADAQYYFERIHPSEKRLDAWNTMITAYASHGRGTEAV 533
+GL + V ++LI +Y KCG + DA F+ + + + + +WN ++ Y G A+
Sbjct: 163 IGLQFDLYVATSLIILYGKCGEINDAGKVFDNM--TIRDVSSWNALLAGYTKSGCIDAAL 220
Query: 534 SSFENMIRAGVQPDEVTFTGLLSGCSHSGLVDVGLEYFNCM-STTYFVEPRYEHYACVVD 710
+ FE M + V++T ++SG S SGL L F+ M V P + V+
Sbjct: 221 AIFERMPWRNI----VSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLP 276
Query: 711 ILGRAGRLV---EAYYLISRMPMQAGGSIWGALLAASRKHRNLEFAEISAKKLFILEPNN 881
+ L + + L RM + + S+ AL A K +L + A+ F N
Sbjct: 277 ACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSL----VDARNCFDKLNRN 332
Query: 882 SGNYILLSNM---YAQAG 926
N I + M YA G
Sbjct: 333 EKNLIAWNTMITAYASYG 350
>ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like
[Cucumis sativus]
Length = 679
Score = 483 bits (1242), Expect = e-134
Identities = 231/337 (68%), Positives = 275/337 (81%)
Frame = +3
Query: 9 CGHLNDAWKVFDQMAVRDNSSWNALIAGYMKEGMFNFAEDLFRRMPNRNIVSWTAMISGY 188
CG +NDA KVFD M +RD SSWNAL+AGY K G + A +F RMP RNIVSWT MISGY
Sbjct: 219 CGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGY 278
Query: 189 TQNGLADRALGLFDEMTDERSAMKPNWVTIVSVLPACAHSAALERGRKIHSYASEMGLDS 368
+Q+GLA +AL LFDEM E S ++PNWVTI+SVLPACA + LERGR+IH A MGL+S
Sbjct: 279 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS 338
Query: 369 NSNVQSALIAMYAKCGSLADAQYYFERIHPSEKRLDAWNTMITAYASHGRGTEAVSSFEN 548
N++V AL AMYAKCGSL DA+ F++++ +EK L AWNTMITAYAS+G G +AVS+F
Sbjct: 339 NASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFRE 398
Query: 549 MIRAGVQPDEVTFTGLLSGCSHSGLVDVGLEYFNCMSTTYFVEPRYEHYACVVDILGRAG 728
MI+AG+QPD++TFTGLLSGCSHSGLVDVGL+YFN MSTTY + PR EHYACV D+LGRAG
Sbjct: 399 MIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAG 458
Query: 729 RLVEAYYLISRMPMQAGGSIWGALLAASRKHRNLEFAEISAKKLFILEPNNSGNYILLSN 908
RL EA L+ MPM AG SIWG+LLAA RKHRNLE AE +A+KLF+LEP N+GNY+LLSN
Sbjct: 459 RLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSN 518
Query: 909 MYAQAGMWEEVNNLRALLKFQGLKKSPGCSWIEANGK 1019
MYA+AG W+EV+ LRA++K QG KKSPGCSWIE NGK
Sbjct: 519 MYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGK 555
Score = 73.2 bits (178), Expect = 1e-10
Identities = 69/289 (23%), Positives = 124/289 (42%), Gaps = 7/289 (2%)
Frame = +3
Query: 81 LIAGYMKEGMFNFAEDLFRRMPNRNIVSWTAMISGYTQNGLADRALGLFDEMTDERSAMK 260
++A Y G + + +F + + + + +MI Y + G A+R + + M
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSM--HSWGFT 168
Query: 261 PNWVTIVSVLPACAHSAALERGRKIHSYASEMGLDSNSNVQSALIAMYAKCGSLADAQYY 440
++ T VL + ++ G+ +H +GL + V ++LI +Y KCG + DA
Sbjct: 169 GDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKV 228
Query: 441 FERIHPSEKRLDAWNTMITAYASHGRGTEAVSSFENMIRAGVQPDEVTFTGLLSGCSHSG 620
F+ + + + + +WN ++ Y G A++ FE M + V++T ++SG S SG
Sbjct: 229 FDNM--TIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI----VSWTTMISGYSQSG 282
Query: 621 LVDVGLEYFNCM-STTYFVEPRYEHYACVVDILGRAGRLV---EAYYLISRMPMQAGGSI 788
L L F+ M V P + V+ + L + + L RM + + S+
Sbjct: 283 LAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASV 342
Query: 789 WGALLAASRKHRNLEFAEISAKKLFILEPNNSGNYILLSNM---YAQAG 926
AL A K +L + A+ F N N I + M YA G
Sbjct: 343 LIALTAMYAKCGSL----VDARNCFDKLNRNEKNLIAWNTMITAYASYG 387
>ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 568
Score = 320 bits (819), Expect = 5e-85
Identities = 161/334 (48%), Positives = 229/334 (68%)
Frame = +3
Query: 12 GHLNDAWKVFDQMAVRDNSSWNALIAGYMKEGMFNFAEDLFRRMPNRNIVSWTAMISGYT 191
G L +A KVF++M+ RD SWN+LI GY+K G N A +LF MP R IVSWT MI+GY
Sbjct: 160 GDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYG 219
Query: 192 QNGLADRALGLFDEMTDERSAMKPNWVTIVSVLPACAHSAALERGRKIHSYASEMGLDSN 371
+ G AL +F EM + ++P+ ++I++VLPACA ALE G+ IH YA + G
Sbjct: 220 RMGCYGDALDVFREM--QMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRK 277
Query: 372 SNVQSALIAMYAKCGSLADAQYYFERIHPSEKRLDAWNTMITAYASHGRGTEAVSSFENM 551
+ + +ALI MYAKCG + +A F+++ EK + +W+TMI A+HG+G EA+ FE M
Sbjct: 278 TGICNALIEMYAKCGCIDEAWNLFDQL--VEKDVISWSTMIGGLANHGKGYEAIQLFEEM 335
Query: 552 IRAGVQPDEVTFTGLLSGCSHSGLVDVGLEYFNCMSTTYFVEPRYEHYACVVDILGRAGR 731
+ V P+E+TF G+L CSH+GL D GL+YF+ MS +Y +EP EHY C++D+LGR+G
Sbjct: 336 CKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGC 395
Query: 732 LVEAYYLISRMPMQAGGSIWGALLAASRKHRNLEFAEISAKKLFILEPNNSGNYILLSNM 911
L +A IS+MP++ IW +LL++ R HRNL+ A I+ K+L LEP SGNY+LL+NM
Sbjct: 396 LGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANM 455
Query: 912 YAQAGMWEEVNNLRALLKFQGLKKSPGCSWIEAN 1013
YA+ G WE+V+N+R L++ + +KK+PG S IE N
Sbjct: 456 YAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVN 489
Score = 80.9 bits (198), Expect = 5e-13
Identities = 64/309 (20%), Positives = 130/309 (42%), Gaps = 31/309 (10%)
Frame = +3
Query: 105 GMFNFAEDLFRRMPNRNIVSWTAMISGYTQNGLADRALGLFDEM-TDERSAMKPNWVTIV 281
G ++A LF+++ + NI ++ A+I Y N A+ +F +M T +++ P+ T
Sbjct: 56 GHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFP 115
Query: 282 SVLPACAHSAALERGRKIHSYASEMGLDSNSNVQSALIAMYAKCGSLADAQYYFERIHPS 461
V+ +C G ++H + G D + ++ALI MY K G L +A FE +
Sbjct: 116 FVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHR 175
Query: 462 E-----------------------------KRLDAWNTMITAYASHGRGTEAVSSFENMI 554
+ + + +W TMIT Y G +A+ F M
Sbjct: 176 DVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQ 235
Query: 555 RAGVQPDEVTFTGLLSGCSHSGLVDVGLEYFNCMSTTYFVEPRYEHYACVVDILGRAGRL 734
G++PDE++ +L C+ G ++VG F+ + ++++ + G +
Sbjct: 236 MVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLR-KTGICNALIEMYAKCGCI 294
Query: 735 VEAYYLISRMPMQAGGSIWGALLAASRKH-RNLEFAEISAKKLFILEPNNSGNYILLSNM 911
EA+ L ++ ++ W ++ H + E ++ + + N ++ +
Sbjct: 295 DEAWNLFDQL-VEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLA 353
Query: 912 YAQAGMWEE 938
+ G+W+E
Sbjct: 354 CSHTGLWDE 362