BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028260
         (788 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containi...   310   2e-82
emb|CBI17752.3| unnamed protein product [Vitis vinifera]              310   2e-82
ref|XP_002513116.1| pentatricopeptide repeat-containing protein,...   295   8e-78
ref|XP_003598903.1| Pentatricopeptide repeat-containing protein ...   295   1e-77
ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containi...   293   4e-77

>ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like
            [Vitis vinifera]
          Length = 1294

 Score =  310 bits (795), Expect = 2e-82
 Identities = 148/239 (61%), Positives = 194/239 (81%)
 Frame = +1

Query: 1    RVMIAVEAFEYLKLKQYTSVSIYNIIMEALYHIGEVNRALVLFHELRISSFEPDSSSYNN 180
            R+ +A+E FE+LK K Y S+SIYNI+MEA++  GEV +AL LF +++ S+F+PDSS+Y+N
Sbjct: 986  RLKLALEVFEHLKAKGYCSISIYNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYSN 1045

Query: 181  GIRCFTETGDIQEACSCYNKIKEMSSVPSNDAYISLTKALCKMGNIDEAMMLVRDCLANV 360
             I CF E GD+QEAC+CYNKI EM  +PS  AY SL K LCK   ID A+MLVRDCLANV
Sbjct: 1046 AIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANV 1105

Query: 361  TSGPMEFKYSLAIIHVCKLNDSGKIVEVLDEMMQQGGLLDEVIYAAIVCGMCKHGTIDEA 540
            TSGPMEFKY+L I+H CK  ++ K+++VL+EMMQ+G   DEV Y+A++ GMCKHGT++EA
Sbjct: 1106 TSGPMEFKYTLTILHACKSGNAEKVIDVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEA 1165

Query: 541  RKVFLYLRDLKLISEADLIVYDDILVDKTKEKTADLVLSGLKFFGLESKLKLKGCKVLP 717
            RKVF  +R+ KL++EA++IVYD+IL++  K+KTADLVLSGLKFFGLESKL+ KG  +LP
Sbjct: 1166 RKVFSNMRERKLLTEANVIVYDEILIEHMKKKTADLVLSGLKFFGLESKLRSKGSTLLP 1224



 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 45/178 (25%), Positives = 77/178 (43%)
 Frame = +1

Query: 112  RALVLFHELRISSFEPDSSSYNNGIRCFTETGDIQEACSCYNKIKEMSSVPSNDAYISLT 291
            R   ++ +++    +P    YN  +    +TG +  A S Y   KE   V  +  Y+ L 
Sbjct: 744  RVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILV 803

Query: 292  KALCKMGNIDEAMMLVRDCLANVTSGPMEFKYSLAIIHVCKLNDSGKIVEVLDEMMQQGG 471
            K LCK G IDE + +  +   +    P    Y+  +  +C  N  G+  E+  EM Q+  
Sbjct: 804  KGLCKAGRIDEVLEVWEEMRKDKVE-PDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKY 862

Query: 472  LLDEVIYAAIVCGMCKHGTIDEARKVFLYLRDLKLISEADLIVYDDILVDKTKEKTAD 645
            L+D  IY +++ G   +  +  A  +   L D      ADL +Y+ ++      K  D
Sbjct: 863  LIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGY--RADLAIYNSLIEGMCNVKQVD 918



 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 10/186 (5%)
 Frame = +1

Query: 25   FEYLKLKQY---TSVSIYNIIMEALYHIGEVNRALVLFHELRISSFEPDSSSYNNGIRCF 195
            + Y K+K++     V +YN IM+ L   G ++ A+ ++ + +      +S +Y   ++  
Sbjct: 747  YVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGL 806

Query: 196  TETGDIQEACSCYNKIKEMSSVPSNDAYISLTKALCKMGNIDEAMMLVRDCLANVTSGPM 375
             + G I E    + ++++    P   AY +L  ALC    + E   L ++          
Sbjct: 807  CKAGRIDEVLEVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEM--------K 858

Query: 376  EFKYSL------AIIHVCKLNDS-GKIVEVLDEMMQQGGLLDEVIYAAIVCGMCKHGTID 534
            + KY +      ++I    +N+  G   ++L ++M  G   D  IY +++ GMC    +D
Sbjct: 859  QKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQVD 918

Query: 535  EARKVF 552
            +A K+F
Sbjct: 919  KAYKLF 924


>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  310 bits (795), Expect = 2e-82
 Identities = 148/239 (61%), Positives = 194/239 (81%)
 Frame = +1

Query: 1    RVMIAVEAFEYLKLKQYTSVSIYNIIMEALYHIGEVNRALVLFHELRISSFEPDSSSYNN 180
            R+ +A+E FE+LK K Y S+SIYNI+MEA++  GEV +AL LF +++ S+F+PDSS+Y+N
Sbjct: 482  RLKLALEVFEHLKAKGYCSISIYNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYSN 541

Query: 181  GIRCFTETGDIQEACSCYNKIKEMSSVPSNDAYISLTKALCKMGNIDEAMMLVRDCLANV 360
             I CF E GD+QEAC+CYNKI EM  +PS  AY SL K LCK   ID A+MLVRDCLANV
Sbjct: 542  AIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANV 601

Query: 361  TSGPMEFKYSLAIIHVCKLNDSGKIVEVLDEMMQQGGLLDEVIYAAIVCGMCKHGTIDEA 540
            TSGPMEFKY+L I+H CK  ++ K+++VL+EMMQ+G   DEV Y+A++ GMCKHGT++EA
Sbjct: 602  TSGPMEFKYTLTILHACKSGNAEKVIDVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEA 661

Query: 541  RKVFLYLRDLKLISEADLIVYDDILVDKTKEKTADLVLSGLKFFGLESKLKLKGCKVLP 717
            RKVF  +R+ KL++EA++IVYD+IL++  K+KTADLVLSGLKFFGLESKL+ KG  +LP
Sbjct: 662  RKVFSNMRERKLLTEANVIVYDEILIEHMKKKTADLVLSGLKFFGLESKLRSKGSTLLP 720


>ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223548127|gb|EEF49619.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1128

 Score =  295 bits (755), Expect = 8e-78
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +1

Query: 4    VMIAVEAFEYLKLKQYTSVSIYNIIMEALYHIGEVNRALVLFHELRISSFEPDSSSYNNG 183
            + +A+E FE LK+K Y SV IYN +MEAL  +GEV +AL LF E++  + EPDS++Y+  
Sbjct: 890  ITLALEVFEELKVKGYISVLIYNTLMEALLKVGEVRKALSLFSEMKDLNCEPDSNTYSIA 949

Query: 184  IRCFTETGDIQEACSCYNKIKEMSSVPSNDAYISLTKALCKMGNIDEAMMLVRDCLANVT 363
            + CF E G+IQEAC C+NKI EMSSVPS  AY SLTK LC +G IDEAMMLVRDCL NVT
Sbjct: 950  VICFVEDGNIQEACVCHNKIIEMSSVPSVAAYCSLTKGLCDIGEIDEAMMLVRDCLGNVT 1009

Query: 364  SGPMEFKYSLAIIHVCKLNDSGKIVEVLDEMMQQGGLLDEVIYAAIVCGMCKHGTIDEAR 543
            SGPMEFKY+L ++HVC+  D+ K++EVL+EMM +    +EVI +AI+ GMCKHGT++EAR
Sbjct: 1010 SGPMEFKYTLTVLHVCRSGDAEKVIEVLNEMMHENCPPNEVILSAIISGMCKHGTLEEAR 1069

Query: 544  KVFLYLRDLKLISEADLIVYDDILVDKTKEKTADLVLSGLKFFGLESKLKLKGCKVL 714
            KVF  LR+ KL++EA  I YD+ L++  K+KTADLV+SGLKFFGLESKL+ KGC +L
Sbjct: 1070 KVFTNLRERKLLTEAKTIFYDERLIEHMKKKTADLVVSGLKFFGLESKLRAKGCTLL 1126



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 3/208 (1%)
 Frame = +1

Query: 31   YLKLKQY---TSVSIYNIIMEALYHIGEVNRALVLFHELRISSFEPDSSSYNNGIRCFTE 201
            Y K+K++       +YN IM+AL     ++ ALV++ + +      DS +Y   I+   +
Sbjct: 652  YQKMKKFGVKPRAFLYNRIMDALIKTAHLDLALVVYDDFKSDGLVEDSVTYMILIKGLCK 711

Query: 202  TGDIQEACSCYNKIKEMSSVPSNDAYISLTKALCKMGNIDEAMMLVRDCLANVTSGPMEF 381
             G I E    + ++K     P   AY ++   LCK G + E   L ++   N        
Sbjct: 712  FGRIDEMMEVWEEMKRDGVNPDVMAYATVVTGLCKGGRVAEGYELFKEMKENKVLIDRAI 771

Query: 382  KYSLAIIHVCKLNDSGKIVEVLDEMMQQGGLLDEVIYAAIVCGMCKHGTIDEARKVFLYL 561
             Y + I    K    G   ++L  ++  G   D  IY +++ G+C    +D+ARK+F  +
Sbjct: 772  -YGVLIEAFVKDGKIGSACDLLQGLVDSGYRADLGIYNSLIEGLCNVKRVDKARKLFQIM 830

Query: 562  RDLKLISEADLIVYDDILVDKTKEKTAD 645
                L  E D    + +LV   + K  D
Sbjct: 831  VQEGL--ELDFKTVNPMLVSYAEMKRMD 856



 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 11/199 (5%)
 Frame = +1

Query: 103  EVNRALVLFH---ELRISSFEPDSSSYNNGIRCFTETGDIQEACSCYNKIKEMSSVPSND 273
            + NR L ++H   +++    +P +  YN  +    +T  +  A   Y+  K    V  + 
Sbjct: 641  DANRGLRVYHVYQKMKKFGVKPRAFLYNRIMDALIKTAHLDLALVVYDDFKSDGLVEDSV 700

Query: 274  AYISLTKALCKMGNIDEAMMLVRDCLANVTSGPMEFKYSLAIIHVCKLNDSGKIVEVLDE 453
             Y+ L K LCK G IDE MM V + +      P    Y+  +  +CK     +  E+  E
Sbjct: 701  TYMILIKGLCKFGRIDE-MMEVWEEMKRDGVNPDVMAYATVVTGLCKGGRVAEGYELFKE 759

Query: 454  MMQQGGLLDEVIYAAIVCGMCKHGTIDEARKVFLYLRDLKLISEADLIVYDDIL------ 615
            M +   L+D  IY  ++    K G I  A  +   L D      ADL +Y+ ++      
Sbjct: 760  MKENKVLIDRAIYGVLIEAFVKDGKIGSACDLLQGLVDSGY--RADLGIYNSLIEGLCNV 817

Query: 616  --VDKTKEKTADLVLSGLK 666
              VDK ++    +V  GL+
Sbjct: 818  KRVDKARKLFQIMVQEGLE 836


>ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355487951|gb|AES69154.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 767

 Score =  295 bits (754), Expect = 1e-77
 Identities = 148/237 (62%), Positives = 185/237 (78%)
 Frame = +1

Query: 10   IAVEAFEYLKLKQYTSVSIYNIIMEALYHIGEVNRALVLFHELRISSFEPDSSSYNNGIR 189
            +A+E F +LK K Y SV IYNI ME+L+  G+V +AL LF E++ S  EPDSS+YN  I 
Sbjct: 487  MALEIFTHLKEKSYVSVEIYNIFMESLHLSGKVEKALSLFDEIKGSDLEPDSSTYNIAIL 546

Query: 190  CFTETGDIQEACSCYNKIKEMSSVPSNDAYISLTKALCKMGNIDEAMMLVRDCLANVTSG 369
            C  + G I+EAC C+NKI EMSS+PS  AY  L K LC +G IDEAM+LVRDCL NVTSG
Sbjct: 547  CLVDHGQIKEACECHNKIIEMSSIPSVAAYNCLAKGLCNIGEIDEAMLLVRDCLGNVTSG 606

Query: 370  PMEFKYSLAIIHVCKLNDSGKIVEVLDEMMQQGGLLDEVIYAAIVCGMCKHGTIDEARKV 549
            PMEFKY L II +CK N + K+++VL+EMMQ+G  LD V+ +AI+ GMCK+GTI+EARKV
Sbjct: 607  PMEFKYCLTIIRMCKSNVAEKLIDVLNEMMQEGCSLDNVVCSAIISGMCKYGTIEEARKV 666

Query: 550  FLYLRDLKLISEADLIVYDDILVDKTKEKTADLVLSGLKFFGLESKLKLKGCKVLPS 720
            F  LR+ KL++E+D IVYD++L+D  K+KTADLV+SGLKFFGLESKLK KGCK LPS
Sbjct: 667  FSILRERKLLTESDTIVYDELLIDHMKKKTADLVISGLKFFGLESKLKSKGCK-LPS 722


>ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like
            [Glycine max]
          Length = 733

 Score =  293 bits (749), Expect = 4e-77
 Identities = 142/238 (59%), Positives = 186/238 (78%)
 Frame = +1

Query: 7    MIAVEAFEYLKLKQYTSVSIYNIIMEALYHIGEVNRALVLFHELRISSFEPDSSSYNNGI 186
            ++A+E F  LK K + SV IYNI M++L+ IGEV +AL LF E++  S +PDS +Y   I
Sbjct: 496  IMALETFGQLKEKGHVSVEIYNIFMDSLHKIGEVKKALSLFDEMKGLSLKPDSFTYCTAI 555

Query: 187  RCFTETGDIQEACSCYNKIKEMSSVPSNDAYISLTKALCKMGNIDEAMMLVRDCLANVTS 366
             C  + G+I+EAC+C+N+I EMS +PS  AY SLTK LC++G IDEAM+LVRDCL NV+ 
Sbjct: 556  LCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGLCQIGEIDEAMLLVRDCLGNVSD 615

Query: 367  GPMEFKYSLAIIHVCKLNDSGKIVEVLDEMMQQGGLLDEVIYAAIVCGMCKHGTIDEARK 546
            GP+EFKYSL IIH CK N + K+++VL+EM++QG  LD VIY +I+ GMCKHGTI+EARK
Sbjct: 616  GPLEFKYSLTIIHACKSNVAEKVIDVLNEMIEQGCSLDNVIYCSIISGMCKHGTIEEARK 675

Query: 547  VFLYLRDLKLISEADLIVYDDILVDKTKEKTADLVLSGLKFFGLESKLKLKGCKVLPS 720
            VF  LR+   ++E++ IVYD++L+D  K+KTADLVLS LKFFGLESKLK KGCK+LPS
Sbjct: 676  VFSNLRERNFLTESNTIVYDELLIDHMKKKTADLVLSSLKFFGLESKLKAKGCKLLPS 733



 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 4/192 (2%)
 Frame = +1

Query: 103 EVNRALVLFH--ELRISSF--EPDSSSYNNGIRCFTETGDIQEACSCYNKIKEMSSVPSN 270
           + NR L ++H  E   + F  +P    YN  +     TG +  A S Y+ +KE   V  +
Sbjct: 211 DANRGLRVYHVYEKMRNKFGVKPRVFLYNRVMDALVRTGHLDLALSVYDDLKEDGLVEES 270

Query: 271 DAYISLTKALCKMGNIDEAMMLVRDCLANVTSGPMEFKYSLAIIHVCKLNDSGKIVEVLD 450
             ++ L K LCK G IDE M+ V   +      P  F Y+  +  +    +    + V +
Sbjct: 271 VTFMVLVKGLCKCGRIDE-MLEVLGRMRERLCKPDVFAYTALVKILVPAGNLDACLRVWE 329

Query: 451 EMMQQGGLLDEVIYAAIVCGMCKHGTIDEARKVFLYLRDLKLISEADLIVYDDILVDKTK 630
           EM +     D   YA ++ G+ K G + E  ++F  ++    +   D ++Y  ++     
Sbjct: 330 EMKRDRVEPDVKAYATMIVGLAKGGRVQEGYELFREMKGKGCL--VDRVIYGALVEAFVA 387

Query: 631 EKTADLVLSGLK 666
           E   +L    LK
Sbjct: 388 EGKVELAFDLLK 399