BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028256
         (646 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containi...   192   5e-47
ref|XP_002312829.1| predicted protein [Populus trichocarpa] gi|2...   164   1e-38
ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|2...   157   2e-36
ref|XP_002518060.1| pentatricopeptide repeat-containing protein,...   154   2e-35
ref|XP_004160885.1| PREDICTED: pentatricopeptide repeat-containi...   153   2e-35

>ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Vitis vinifera]
          Length = 1101

 Score =  192 bits (488), Expect = 5e-47
 Identities = 99/212 (46%), Positives = 139/212 (65%), Gaps = 1/212 (0%)
 Frame = +3

Query: 3   KLVNCGEIQIAESLYVDKLISRGVDCNGPVLNSMVVCYCKLGKVDEAKSVFDKLISGRLV 182
           KLV  GE + AE++Y D +I+RG+  +   LNSMV+CYC LGK++EA + FD+L      
Sbjct: 101 KLVGSGEHRFAEAVYRDYVIARGIIPDSETLNSMVICYCNLGKLEEAMAHFDRLFEVDSF 160

Query: 183 LDKGACFSFLKLLSMGDRVLEAFDYFQTIDDKGVLLPFRCYNMMADGLCYMGCLDEAKRL 362
             K AC + L+ L   +RVLEAFDYF  I+D G+L+   C+N + DGLC  G +DEA  +
Sbjct: 161 PCKPACNAMLRELCARERVLEAFDYFVRINDVGILMGLWCFNRLIDGLCDKGHVDEAFYM 220

Query: 363 FYMMCGR-GMRPRAYFCKSLVLGFCSRGQIEEAESLLMEIESFGYVLDKTLYTSVVREYC 539
           F  M  R G+    +  K+L  G C + ++EEAE  + E+ES G+ +DK +YTS++  YC
Sbjct: 221 FDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYC 280

Query: 540 KKRKSNTALRVFFRMLKIGCEVDNYIYNTLIH 635
           + +K  TA+RVF RMLK+GC+ D Y YNTLIH
Sbjct: 281 RGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIH 312



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 44/175 (25%), Positives = 76/175 (43%)
 Frame = +3

Query: 117  CKLGKVDEAKSVFDKLISGRLVLDKGACFSFLKLLSMGDRVLEAFDYFQTIDDKGVLLPF 296
            C  GK D A    DK++S           S +K L     V +A      + + G++   
Sbjct: 490  CAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDL 549

Query: 297  RCYNMMADGLCYMGCLDEAKRLFYMMCGRGMRPRAYFCKSLVLGFCSRGQIEEAESLLME 476
              Y +M    C  G L  A  L   M  RG++P      S++     R +I EAE++   
Sbjct: 550  ATYLIMVHEHCNHGDLASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKM 609

Query: 477  IESFGYVLDKTLYTSVVREYCKKRKSNTALRVFFRMLKIGCEVDNYIYNTLIHEL 641
            +   G   D  +Y +++  Y K R++  A ++F +M++ G +  ++ Y  +I  L
Sbjct: 610  MLEAGVDPDAIIYVTMISGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGL 664



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 45/202 (22%), Positives = 87/202 (43%)
 Frame = +3

Query: 33   AESLYVDKLISRGVDCNGPVLNSMVVCYCKLGKVDEAKSVFDKLISGRLVLDKGACFSFL 212
            A  L++DK++S G        NS++ C  +   V++AKS+ D +    +V D       +
Sbjct: 497  AALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMV 556

Query: 213  KLLSMGDRVLEAFDYFQTIDDKGVLLPFRCYNMMADGLCYMGCLDEAKRLFYMMCGRGMR 392
                    +  AF     ++++G+      Y+ +   L     + EA+ +F MM   G+ 
Sbjct: 557  HEHCNHGDLASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVD 616

Query: 393  PRAYFCKSLVLGFCSRGQIEEAESLLMEIESFGYVLDKTLYTSVVREYCKKRKSNTALRV 572
            P A    +++ G+    +  EA  L  ++   G+      YT+V+    K+   +     
Sbjct: 617  PDAIIYVTMISGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSY 676

Query: 573  FFRMLKIGCEVDNYIYNTLIHE 638
               MLK G   +  +Y +LI++
Sbjct: 677  LSDMLKDGFVPNTVLYTSLINQ 698


>ref|XP_002312829.1| predicted protein [Populus trichocarpa] gi|222849237|gb|EEE86784.1|
           predicted protein [Populus trichocarpa]
          Length = 734

 Score =  164 bits (415), Expect = 1e-38
 Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
 Frame = +3

Query: 3   KLVNCGEIQIAESLYVDKLISRGVDCNGPVLNSMVVCYCKLGKVDEAKSVFDKLI-SGRL 179
           KLV+ GE   A   Y D +I+RG + +  ++NSM++C  KLGK+D+A  +FD+LI S   
Sbjct: 99  KLVDLGEPLSAHEFYRDHVIARGTEPDSNIVNSMIICLAKLGKLDDAVRLFDRLIGSDDC 158

Query: 180 VLDKGACFSFLKLLSMGDRVLEAFDYFQTIDDKGVLLPFRCYNMMADGLCYMGCLDEAKR 359
           VL   AC   L+     DR LEAFDY   I D  V L    Y ++ +GLC+   + EA +
Sbjct: 159 VLSNAACIMILEGFYEQDRFLEAFDYLVRISDANVKLGMWVYTVLINGLCHQRYVGEAIQ 218

Query: 360 LFYMMCGR-GMRPRAYFCKSLVLGFCSRGQIEEAESLLMEIESFGYVLDKTLYTSVVREY 536
           +F +MC R G  P  +  K+L  G C  G + EAE +  E+E  G+ +DK +YTS++  +
Sbjct: 219 VFDIMCKRTGSPPTLHMFKTLFFGLCKAGWLVEAELVFEEMEVQGFFVDKVMYTSLMNAH 278

Query: 537 CKKRKSNTALRVFFRMLKIGCEVDNYIYNTLIH 635
            K +K   A+RV+FRMLK GC+ D   YNTLIH
Sbjct: 279 GKNKKMKMAMRVYFRMLKKGCDPDICTYNTLIH 311


>ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|222837757|gb|EEE76122.1|
           predicted protein [Populus trichocarpa]
          Length = 893

 Score =  157 bits (396), Expect = 2e-36
 Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
 Frame = +3

Query: 3   KLVNCGEIQIAESLYVDKLISRGVDCNGPVLNSMVVCYCKLGKVDEAKSVFDKLI-SGRL 179
           KLV+ G    A   Y D +++RG++ +  ++NS+V+C  KLGK+D+A  +FD+ I SG  
Sbjct: 99  KLVDLGHPLSAREFYHDLVVARGIEPDSNIVNSLVICLAKLGKLDDAVKLFDRHIGSGDC 158

Query: 180 VLDKGACFSFLKLLSMGDRVLEAFDYFQTIDDKGVLLPFRCYNMMADGLCYMGCLDEAKR 359
           ++   AC + LK     D+ +EAFDYF  I D  V L    YN++ DGLC  G + EA  
Sbjct: 159 LVSNAACSTILKGFYEQDKFVEAFDYFVRISDANVKLGMWAYNVLIDGLCQQGYVGEAIE 218

Query: 360 LFYMMCG-RGMRPRAYFCKSLVLGFCSRGQIEEAESLLMEIESFGYVLDKTLYTSVVREY 536
           +  +MC   G+ P  +  K+L  G C RG   EAE +  E+E+ G+ +DK +YTS++  Y
Sbjct: 219 VLDIMCRITGLPPTLHMLKTLFYGLCKRGWSIEAEWIFEEMEAQGFFVDKVMYTSLMNAY 278

Query: 537 CKKRKSNTALRVFFRMLKIGCEVDNYIYNTLIH 635
            + +K   ALRV+FRMLK G + D    NTLI+
Sbjct: 279 GRDKKMKMALRVYFRMLKNGYDPDICTCNTLIY 311


>ref|XP_002518060.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542656|gb|EEF44193.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 402

 Score =  154 bits (388), Expect = 2e-35
 Identities = 84/211 (39%), Positives = 123/211 (58%), Gaps = 1/211 (0%)
 Frame = +3

Query: 3   KLVNCGEIQIAESLYVDKLISRGVDCNGPVLNSMVVCYCKLGKVDEAKSVFDKLISGRLV 182
           KLV+ GE   A ++Y +  I+R +  N  + NSM++C+ KLGK++EA+ +FDKLI    V
Sbjct: 103 KLVDLGEPNFAYTVYCES-INRSIQPNASITNSMIICFVKLGKLEEARLLFDKLIGNGCV 161

Query: 183 LDKGACFSFLKLLSMGDRVLEAFDYFQTIDDKGVLLPFRCYNMMADGLCYMGCLDEAKRL 362
               AC   L+ L   +  LEAFD F  I D  + L    YN++ DGLC  GC+ +A  +
Sbjct: 162 PCNAACNVILRELCGQEMFLEAFDCFVRIRDAKMQLGMWFYNVLIDGLCSKGCVGDAMEV 221

Query: 363 FYMMCGR-GMRPRAYFCKSLVLGFCSRGQIEEAESLLMEIESFGYVLDKTLYTSVVREYC 539
           F +M  R    P  +  KSL  G C RG + EAES+  ++E+ G+ +DK +YT+++  Y 
Sbjct: 222 FNLMPKRTSFLPTLHNYKSLFYGLCKRGWVVEAESICGKMEARGFFVDKVMYTTLMNVYI 281

Query: 540 KKRKSNTALRVFFRMLKIGCEVDNYIYNTLI 632
           K +K    +R+F RMLK+GC  D   Y  LI
Sbjct: 282 KDKKMKMGVRIFLRMLKMGCYPDTVTYTALI 312


>ref|XP_004160885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Cucumis sativus]
          Length = 693

 Score =  153 bits (387), Expect = 2e-35
 Identities = 82/204 (40%), Positives = 121/204 (59%), Gaps = 1/204 (0%)
 Frame = +3

Query: 27  QIAESLYVDKLISRGVDCNGPVLNSMVVCYCKLGKVDEAKSVFDKLISGRLVLDKGACFS 206
           Q++E LY  K +  G + +  +L+SMV C+C+LGK +EA S F++L+S   V  K +  +
Sbjct: 97  QLSEFLYNRKFVVGGAEPDVLLLDSMVSCFCRLGKFEEALSHFNRLLSLNYVPSKVSFNA 156

Query: 207 FLKLLSMGDRVLEAFDYFQTIDDKGVLLPFRCYNMMADGLCYMGCLDEAKRLF-YMMCGR 383
             + L    RVLEAF+YF  ++  G+ L   C+N++ DGLC  G + EA  LF  M    
Sbjct: 157 IFRELCAQGRVLEAFNYFVRVNGAGIYLGCWCFNVLMDGLCNQGFMGEALELFDIMQSTN 216

Query: 384 GMRPRAYFCKSLVLGFCSRGQIEEAESLLMEIESFGYVLDKTLYTSVVREYCKKRKSNTA 563
           G  P  +  K+L  G C  G + EAE L+ E+E      DKT+YTS++  YC+ RK   A
Sbjct: 217 GYPPTLHLFKTLFYGLCKSGWLVEAELLIREMEFRSLYPDKTMYTSLIHGYCRDRKMKMA 276

Query: 564 LRVFFRMLKIGCEVDNYIYNTLIH 635
           ++  FRM+KIGC+ D +  N+LIH
Sbjct: 277 MQALFRMVKIGCKPDTFTLNSLIH 300