BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028135
         (1302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   622   e-176
ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|2...   615   e-174
ref|XP_002517447.1| pentatricopeptide repeat-containing protein,...   604   e-170
dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]           603   e-170
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...   603   e-170

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
            chloroplastic [Vitis vinifera]
            gi|296087770|emb|CBI35026.3| unnamed protein product
            [Vitis vinifera]
          Length = 675

 Score =  622 bits (1605), Expect = e-176
 Identities = 305/371 (82%), Positives = 343/371 (92%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFWRMRK 1121
            ST+LSMYV+N K++EALSVFSEM EV+C LDLTTCNVMIDVYGQLDM KEAD+LFW MRK
Sbjct: 299  STLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRK 358

Query: 1120 IGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEK 941
            +GIEP +VSYNTLLRVYG AEL+GEAIHLFRLMQRKDIEQNVVTYNTMI IYGKSLEHEK
Sbjct: 359  MGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEK 418

Query: 940  ANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIV 761
            A NL++EMQ+RG+EPN ITYSTIISIW+K+G LDRAAMLFQKLRSSG+EIDQVLYQTMIV
Sbjct: 419  ATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIV 478

Query: 760  AYERAGLVAHAKRLLHELKRPDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELKDISV 581
            AYERAGLVAHAKRLLHELKRPDNIPR TAI ILA AGRIEEATWVFRQAFDAGE+KDI+V
Sbjct: 479  AYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFDAGEVKDITV 538

Query: 580  FGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADAVYREMQ 401
            FGCMIDLFSRN KHTNVIEVFDKMR AGY+ DSNVIALVLNA GKLR+FEKADA+Y+EM+
Sbjct: 539  FGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEME 598

Query: 400  EEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERANRLD 221
            EEGC+F DEVHFQMLSLYG   +F +V+ LF+RL++DPNINKKEL+ VV  IYERANRL+
Sbjct: 599  EEGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSDPNINKKELHLVVASIYERANRLN 658

Query: 220  DASRIISQIND 188
            DAS+I++++ +
Sbjct: 659  DASQIMNRMRE 669



 Score =  120 bits (300), Expect = 1e-24
 Identities = 80/369 (21%), Positives = 175/369 (47%), Gaps = 4/369 (1%)
 Frame = -3

Query: 1255 ALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFWRMRKIGIEPNVVSYNTLLR 1076
            A  +F EM++   A D  T + +I  +G+  M   A     +M +  +  ++V Y+ L+ 
Sbjct: 174  AHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIE 233

Query: 1075 VYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEKANNLIKEMQSRGVEP 896
            +      Y +AI +F  ++R  I  ++V YN+MI+++GK+    +A  L+ EM++ GV P
Sbjct: 234  LSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMP 293

Query: 895  NTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLL 716
            +T++YST++S++ ++G    A  +F ++      +D      MI  Y +  +   A RL 
Sbjct: 294  DTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLF 353

Query: 715  HELKR----PDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELKDISVFGCMIDLFSRN 548
              +++    P  +   T + +   A    EA  +FR        +++  +  MI ++ ++
Sbjct: 354  WSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKS 413

Query: 547  NKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADAVYREMQEEGCLFPDEVH 368
             +H     +  +M+  G   ++   + +++ + K    ++A  ++++++  G      ++
Sbjct: 414  LEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLY 473

Query: 367  FQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERANRLDDASRIISQIND 188
              M+  Y         + L   L    NI ++    ++ G    A R+++A+ +  Q  D
Sbjct: 474  QTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILAG----AGRIEEATWVFRQAFD 529

Query: 187  AVKLKSRSV 161
            A ++K  +V
Sbjct: 530  AGEVKDITV 538



 Score =  111 bits (277), Expect = 5e-22
 Identities = 78/331 (23%), Positives = 153/331 (46%), Gaps = 4/331 (1%)
 Frame = -3

Query: 1165 DMTKEADKLFWRMRKIGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTY 986
            D  +    L W   +    P+V +YN ++R    A+ +  A  LF  M+++ +  +  TY
Sbjct: 134  DWQRSLALLDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTY 193

Query: 985  NTMISIYGKSLEHEKANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRS 806
            +T+I+ +GK    + A + +++M+   V  + + YS +I +  K  +  +A  +F +L+ 
Sbjct: 194  STLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKR 253

Query: 805  SGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRGTAIHILARAGRIEE 638
            SG+  D V Y +MI  + +A L   A+ LL E++     PD +   T + +    G+  E
Sbjct: 254  SGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVE 313

Query: 637  ATWVFRQAFDAGELKDISVFGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLN 458
            A  VF +  +     D++    MID++ + +       +F  MR  G          +L 
Sbjct: 314  ALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLR 373

Query: 457  AYGKLRDFEKADAVYREMQEEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNIN 278
             YG+   F +A  ++R MQ +        +  M+ +YG+  E +    L Q +       
Sbjct: 374  VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEP 433

Query: 277  KKELYHVVVGIYERANRLDDASRIISQINDA 185
                Y  ++ I+++A +LD A+ +  ++  +
Sbjct: 434  NAITYSTIISIWDKAGKLDRAAMLFQKLRSS 464


>ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|222867031|gb|EEF04162.1|
            predicted protein [Populus trichocarpa]
          Length = 629

 Score =  615 bits (1587), Expect = e-174
 Identities = 302/377 (80%), Positives = 343/377 (90%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFWRMRK 1121
            ST+LS+YV+N+KF+EALSVF+EM E KC LDLTTCNVMIDVYGQLDM KEAD+LFW MRK
Sbjct: 251  STLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRK 310

Query: 1120 IGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEK 941
            +GIEPNVVSYNTLLRVYG  EL+GEAIHLFRLMQ+KDIEQNVVTYNTMI +YGKSLEHEK
Sbjct: 311  MGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEK 370

Query: 940  ANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIV 761
            A NL++EMQ+RG+EPN ITYSTIISIW K+G LDRAAMLFQKLRSSGVEIDQVLYQTMIV
Sbjct: 371  ATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 430

Query: 760  AYERAGLVAHAKRLLHELKRPDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELKDISV 581
            AYER+GLVAHAKRLLHELK PD+IPR TAI ILARAGRIEEATWVFRQAFDAGE+KDISV
Sbjct: 431  AYERSGLVAHAKRLLHELKHPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISV 490

Query: 580  FGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADAVYREMQ 401
            FGCM+DLFSRN K  NVIEVF+KMR AGY+ DSNVIALVLNAYGKL +FEKADA+Y+EMQ
Sbjct: 491  FGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQ 550

Query: 400  EEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERANRLD 221
            EE C+FPDEVHFQMLSLYG  ++F ++E LF+RL++DPNINKKEL+ VV  IYER NRL+
Sbjct: 551  EEECVFPDEVHFQMLSLYGARKDFMMIEALFERLDSDPNINKKELHLVVASIYERKNRLN 610

Query: 220  DASRIISQINDAVKLKS 170
            DASRI+++++    L+S
Sbjct: 611  DASRIMNRMSKGGVLRS 627



 Score =  121 bits (304), Expect = 3e-25
 Identities = 84/386 (21%), Positives = 185/386 (47%), Gaps = 6/386 (1%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFW--RM 1127
            + +L   +  +++  A  +F EM+    A D  T + +I  +G+  M   +  LFW  +M
Sbjct: 111  NVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDAS--LFWLQQM 168

Query: 1126 RKIGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEH 947
             +  +  ++V Y+ L+ +      Y +AI +F  ++R  I  ++V YN+MI+++GK+   
Sbjct: 169  EQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLF 228

Query: 946  EKANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTM 767
             +A  L+KEM+  GV P+T++YST++S++ ++     A  +F ++  +   +D      M
Sbjct: 229  REAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVM 288

Query: 766  IVAYERAGLVAHAKRLLHELKR----PDNIPRGTAIHILARAGRIEEATWVFRQAFDAGE 599
            I  Y +  +   A RL   +++    P+ +   T + +        EA  +FR       
Sbjct: 289  IDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDI 348

Query: 598  LKDISVFGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADA 419
             +++  +  MI ++ ++ +H     +  +M+  G   ++   + +++ +GK    ++A  
Sbjct: 349  EQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAM 408

Query: 418  VYREMQEEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYE 239
            ++++++  G      ++  M+  Y         + L   L    +I ++      + I  
Sbjct: 409  LFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRE----TAIKILA 464

Query: 238  RANRLDDASRIISQINDAVKLKSRSV 161
            RA R+++A+ +  Q  DA ++K  SV
Sbjct: 465  RAGRIEEATWVFRQAFDAGEVKDISV 490



 Score =  107 bits (268), Expect = 5e-21
 Identities = 82/345 (23%), Positives = 160/345 (46%), Gaps = 40/345 (11%)
 Frame = -3

Query: 1108 PNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEKANNL 929
            P+V +YN +LR    A+ +  A  LF  M+ + +  +  TY+T+I+ +GK+   + +   
Sbjct: 105  PSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFW 164

Query: 928  IKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 749
            +++M+   V  + + YS +I +  K  +  +A  +F +L+ SG+  D V Y +MI  + +
Sbjct: 165  LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGK 224

Query: 748  AGLVAHAKRLLHELKR----PDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELKDISV 581
            A L   AK L+ E++     PD +   T + +     +  EA  VF +  +A    D++ 
Sbjct: 225  AKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTT 284

Query: 580  FGCMIDLFSRNNKHTNVIEVFDKMRAAGYY------------------------------ 491
               MID++ + +       +F  MR  G                                
Sbjct: 285  CNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQ 344

Query: 490  ---ADSNVIA--LVLNAYGKLRDFEKADAVYREMQEEGCLFPDEVHFQ-MLSLYGEEREF 329
                + NV+    ++  YGK  + EKA  + +EMQ  G + P+ + +  ++S++G+  + 
Sbjct: 345  KKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRG-IEPNAITYSTIISIWGKAGKL 403

Query: 328  DIVELLFQRLNADPNINKKELYHVVVGIYERANRLDDASRIISQI 194
            D   +LFQ+L +      + LY  ++  YER+  +  A R++ ++
Sbjct: 404  DRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHEL 448


>ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543458|gb|EEF44989.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  604 bits (1557), Expect = e-170
 Identities = 297/370 (80%), Positives = 338/370 (91%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFWRMRK 1121
            ST+LS+YV+N+KF+EALSVF+EM E  C+LDL TCN+MIDVYGQLDM KEAD+LFW MRK
Sbjct: 278  STLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRK 337

Query: 1120 IGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEK 941
            +GIEPNVVSYNTLL+VYG AEL+GEAIHLFRLMQRK+IEQNVVTYNTMI IYGKSLEHEK
Sbjct: 338  MGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEK 397

Query: 940  ANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIV 761
            A NL++EMQ RG+EPN ITYSTIISIW K+G LDRAAMLFQKLRSSGVEIDQVLYQTMIV
Sbjct: 398  ATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 457

Query: 760  AYERAGLVAHAKRLLHELKRPDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELKDISV 581
            AYERAGLVAHAKRLLH+LK PD IPR TAI ILARAGRIEEATWVFRQAFDAGE+KDISV
Sbjct: 458  AYERAGLVAHAKRLLHDLKCPDIIPRDTAIKILARAGRIEEATWVFRQAFDAGEVKDISV 517

Query: 580  FGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADAVYREMQ 401
            F CMI+LFSRN +  NV+EVF+KMR AGY+ DS+VIALVLNAYGKLR+FEKADAVYREMQ
Sbjct: 518  FRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREMQ 577

Query: 400  EEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERANRLD 221
            EE C+FPDEVHFQMLSLYG  ++F +VE LF++L++DPNINKKEL+ VV  IYER NRL+
Sbjct: 578  EEECVFPDEVHFQMLSLYGARKDFIMVESLFEKLDSDPNINKKELHLVVASIYERQNRLN 637

Query: 220  DASRIISQIN 191
            DASRI+++++
Sbjct: 638  DASRIMNRMS 647



 Score =  125 bits (313), Expect = 3e-26
 Identities = 87/386 (22%), Positives = 190/386 (49%), Gaps = 6/386 (1%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFW--RM 1127
            + +L   +  +K+  A  +F EM++   + D  T + +I  +G+  M  E+  LFW  +M
Sbjct: 138  NVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDES--LFWLQQM 195

Query: 1126 RKIGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEH 947
             +  +  ++V Y+ L+ +      Y +AI +F  ++R  I  ++V YN+MI+++GK+   
Sbjct: 196  EQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGKARLF 255

Query: 946  EKANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTM 767
             +A  L+ EM+  GV P+T++YST++S++ ++     A  +F ++  +   +D +    M
Sbjct: 256  REARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIM 315

Query: 766  IVAYERAGLVAHAKRLLHELKR----PDNIPRGTAIHILARAGRIEEATWVFRQAFDAGE 599
            I  Y +  +V  A RL   +++    P+ +   T + +   A    EA  +FR       
Sbjct: 316  IDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEI 375

Query: 598  LKDISVFGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADA 419
             +++  +  MI ++ ++ +H     +  +M+  G   ++   + +++ +GK    ++A  
Sbjct: 376  EQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAM 435

Query: 418  VYREMQEEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYE 239
            ++++++  G      ++  M+  Y         + L   L   P+I  ++     + I  
Sbjct: 436  LFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKC-PDIIPRD---TAIKILA 491

Query: 238  RANRLDDASRIISQINDAVKLKSRSV 161
            RA R+++A+ +  Q  DA ++K  SV
Sbjct: 492  RAGRIEEATWVFRQAFDAGEVKDISV 517



 Score =  114 bits (286), Expect = 4e-23
 Identities = 94/400 (23%), Positives = 181/400 (45%), Gaps = 41/400 (10%)
 Frame = -3

Query: 1270 QKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQ-LDMTKEADKLFWRMRKIGIEPNVVS 1094
            Q  +E  S+ S  KE + ++       M+ +  Q  D  +    L W        P+V +
Sbjct: 82   QNEVELYSLLSPYKERQLSI-----RFMVSLISQEADWQRSLALLDWINEVARYSPSVFA 136

Query: 1093 YNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEKANNLIKEMQ 914
            YN +LR    A+ +  A  LF  M+++ +  +  TY+T+I+ +GK+   +++   +++M+
Sbjct: 137  YNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFWLQQME 196

Query: 913  SRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVA 734
               V  + + YS +I +  K  +  +A  +F +L+ SG+  D V Y +MI  + +A L  
Sbjct: 197  QDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGKARLFR 256

Query: 733  HAKRLLHELKR----PDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELKDISVFGCMI 566
             A+ L+HE++     PD +   T + +     +  EA  VF +  +A    D+     MI
Sbjct: 257  EARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMI 316

Query: 565  DLFSRNNKHTNVIEVFDKMRAAGY---------------------------------YAD 485
            D++ + +       +F  MR  G                                    +
Sbjct: 317  DVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIE 376

Query: 484  SNVIA--LVLNAYGKLRDFEKADAVYREMQEEGCLFPDEVHFQ-MLSLYGEEREFDIVEL 314
             NV+    ++  YGK  + EKA  + +EMQ+ G + P+ + +  ++S++G+  + D   +
Sbjct: 377  QNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRG-IEPNAITYSTIISIWGKAGKLDRAAM 435

Query: 313  LFQRLNADPNINKKELYHVVVGIYERANRLDDASRIISQI 194
            LFQ+L +      + LY  ++  YERA  +  A R++  +
Sbjct: 436  LFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDL 475


>dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  603 bits (1554), Expect = e-170
 Identities = 291/376 (77%), Positives = 340/376 (90%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFWRMRK 1121
            ST+LS+YV+N KF+EALSVF+EMKEV CALDLTTCN+MIDVYGQLDM KEAD+LFW +RK
Sbjct: 167  STLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRK 226

Query: 1120 IGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEK 941
            + IEPNVVSYNT+LRVYG AEL+GEAIHLFRLMQRKDIEQNVVTYNTMI IYGK++EHEK
Sbjct: 227  MDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEK 286

Query: 940  ANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIV 761
            A NL++EMQSRG+EPN ITYSTIISIW K+G LDRAA LFQKLRSSGVEIDQVLYQTMIV
Sbjct: 287  ATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIV 346

Query: 760  AYERAGLVAHAKRLLHELKRPDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELKDISV 581
            AYER GL+ HAKRLLHELK PDNIPR TAI ILA+AGR EEATWVFRQAF++GE+KDISV
Sbjct: 347  AYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISV 406

Query: 580  FGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADAVYREMQ 401
            FGCMI+L+SRN ++ NVIEVF+KMR AGY+ DSNVIA+VLNAYGK R+FEKAD VYREMQ
Sbjct: 407  FGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 466

Query: 400  EEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERANRLD 221
            EEGC+FPDEVHFQMLSLY  +++F++VE LFQRL +DPN+N KEL+ VV  +YERA++L+
Sbjct: 467  EEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERADKLN 526

Query: 220  DASRIISQINDAVKLK 173
            DASR+++++ +   LK
Sbjct: 527  DASRVMNRMRERGILK 542



 Score =  130 bits (328), Expect = 6e-28
 Identities = 87/384 (22%), Positives = 183/384 (47%), Gaps = 4/384 (1%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFWRMRK 1121
            + +L   +  ++F  A  +F EM++   A D  T + +I  +G+  M   A     +M +
Sbjct: 27   NVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ 86

Query: 1120 IGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEK 941
              +  ++V Y+ L+ +      Y +AI +F  ++R  I  ++V YN+MI++YGK+    +
Sbjct: 87   DRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFRE 146

Query: 940  ANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIV 761
            A  LIKEM   GV PNT++YST++S++ ++     A  +F +++     +D      MI 
Sbjct: 147  ARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMID 206

Query: 760  AYERAGLVAHAKRLLHELKR----PDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELK 593
             Y +  +V  A RL   L++    P+ +   T + +   A    EA  +FR        +
Sbjct: 207  VYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQ 266

Query: 592  DISVFGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADAVY 413
            ++  +  MI ++ +  +H     +  +M++ G   ++   + +++ +GK    ++A  ++
Sbjct: 267  NVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLF 326

Query: 412  REMQEEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERA 233
            ++++  G      ++  M+  Y         + L   L    NI ++      + I  +A
Sbjct: 327  QKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRE----TAITILAKA 382

Query: 232  NRLDDASRIISQINDAVKLKSRSV 161
             R ++A+ +  Q  ++ ++K  SV
Sbjct: 383  GRTEEATWVFRQAFESGEVKDISV 406



 Score =  105 bits (262), Expect = 3e-20
 Identities = 81/364 (22%), Positives = 164/364 (45%), Gaps = 40/364 (10%)
 Frame = -3

Query: 1165 DMTKEADKLFWRMRKIGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTY 986
            D  +    L W   +    P+V +YN +LR    A+ +  A  LF  M+++ +  +  TY
Sbjct: 2    DWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTY 61

Query: 985  NTMISIYGKSLEHEKANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRS 806
            +T+I+ +GK    + A + +++M+   V  + + YS +I +  +  +  +A  +F +L+ 
Sbjct: 62   STLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 121

Query: 805  SGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRGTAIHILARAGRIEE 638
            SG+  D V Y +MI  Y +A L   A+ L+ E+      P+ +   T + +     +  E
Sbjct: 122  SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLE 181

Query: 637  ATWVFRQAFDAGELKDISVFGCMIDLFSRNN----------------------KHTNVIE 524
            A  VF +  +     D++    MID++ + +                       +  ++ 
Sbjct: 182  ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILR 241

Query: 523  VFDKMRAAGYY-----------ADSNVIA--LVLNAYGKLRDFEKADAVYREMQEEGCLF 383
            V+ +    G              + NV+    ++  YGK  + EKA  + +EMQ  G + 
Sbjct: 242  VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRG-IE 300

Query: 382  PDEVHFQ-MLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERANRLDDASRI 206
            P+ + +  ++S++G+  + D    LFQ+L +      + LY  ++  YER   +  A R+
Sbjct: 301  PNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRL 360

Query: 205  ISQI 194
            + ++
Sbjct: 361  LHEL 364


>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g39980, chloroplastic; Flags: Precursor
            gi|10176990|dbj|BAB10222.1| unnamed protein product
            [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 678

 Score =  603 bits (1554), Expect = e-170
 Identities = 291/376 (77%), Positives = 340/376 (90%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFWRMRK 1121
            ST+LS+YV+N KF+EALSVF+EMKEV CALDLTTCN+MIDVYGQLDM KEAD+LFW +RK
Sbjct: 299  STLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRK 358

Query: 1120 IGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEK 941
            + IEPNVVSYNT+LRVYG AEL+GEAIHLFRLMQRKDIEQNVVTYNTMI IYGK++EHEK
Sbjct: 359  MDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEK 418

Query: 940  ANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIV 761
            A NL++EMQSRG+EPN ITYSTIISIW K+G LDRAA LFQKLRSSGVEIDQVLYQTMIV
Sbjct: 419  ATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIV 478

Query: 760  AYERAGLVAHAKRLLHELKRPDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELKDISV 581
            AYER GL+ HAKRLLHELK PDNIPR TAI ILA+AGR EEATWVFRQAF++GE+KDISV
Sbjct: 479  AYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISV 538

Query: 580  FGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADAVYREMQ 401
            FGCMI+L+SRN ++ NVIEVF+KMR AGY+ DSNVIA+VLNAYGK R+FEKAD VYREMQ
Sbjct: 539  FGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 598

Query: 400  EEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERANRLD 221
            EEGC+FPDEVHFQMLSLY  +++F++VE LFQRL +DPN+N KEL+ VV  +YERA++L+
Sbjct: 599  EEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERADKLN 658

Query: 220  DASRIISQINDAVKLK 173
            DASR+++++ +   LK
Sbjct: 659  DASRVMNRMRERGILK 674



 Score =  130 bits (328), Expect = 6e-28
 Identities = 87/384 (22%), Positives = 183/384 (47%), Gaps = 4/384 (1%)
 Frame = -3

Query: 1300 STILSMYVDNQKFMEALSVFSEMKEVKCALDLTTCNVMIDVYGQLDMTKEADKLFWRMRK 1121
            + +L   +  ++F  A  +F EM++   A D  T + +I  +G+  M   A     +M +
Sbjct: 159  NVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ 218

Query: 1120 IGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTYNTMISIYGKSLEHEK 941
              +  ++V Y+ L+ +      Y +AI +F  ++R  I  ++V YN+MI++YGK+    +
Sbjct: 219  DRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFRE 278

Query: 940  ANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRSSGVEIDQVLYQTMIV 761
            A  LIKEM   GV PNT++YST++S++ ++     A  +F +++     +D      MI 
Sbjct: 279  ARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMID 338

Query: 760  AYERAGLVAHAKRLLHELKR----PDNIPRGTAIHILARAGRIEEATWVFRQAFDAGELK 593
             Y +  +V  A RL   L++    P+ +   T + +   A    EA  +FR        +
Sbjct: 339  VYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQ 398

Query: 592  DISVFGCMIDLFSRNNKHTNVIEVFDKMRAAGYYADSNVIALVLNAYGKLRDFEKADAVY 413
            ++  +  MI ++ +  +H     +  +M++ G   ++   + +++ +GK    ++A  ++
Sbjct: 399  NVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLF 458

Query: 412  REMQEEGCLFPDEVHFQMLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERA 233
            ++++  G      ++  M+  Y         + L   L    NI ++      + I  +A
Sbjct: 459  QKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRE----TAITILAKA 514

Query: 232  NRLDDASRIISQINDAVKLKSRSV 161
             R ++A+ +  Q  ++ ++K  SV
Sbjct: 515  GRTEEATWVFRQAFESGEVKDISV 538



 Score =  105 bits (262), Expect = 3e-20
 Identities = 81/364 (22%), Positives = 164/364 (45%), Gaps = 40/364 (10%)
 Frame = -3

Query: 1165 DMTKEADKLFWRMRKIGIEPNVVSYNTLLRVYGHAELYGEAIHLFRLMQRKDIEQNVVTY 986
            D  +    L W   +    P+V +YN +LR    A+ +  A  LF  M+++ +  +  TY
Sbjct: 134  DWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTY 193

Query: 985  NTMISIYGKSLEHEKANNLIKEMQSRGVEPNTITYSTIISIWEKSGNLDRAAMLFQKLRS 806
            +T+I+ +GK    + A + +++M+   V  + + YS +I +  +  +  +A  +F +L+ 
Sbjct: 194  STLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 253

Query: 805  SGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRGTAIHILARAGRIEE 638
            SG+  D V Y +MI  Y +A L   A+ L+ E+      P+ +   T + +     +  E
Sbjct: 254  SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLE 313

Query: 637  ATWVFRQAFDAGELKDISVFGCMIDLFSRNN----------------------KHTNVIE 524
            A  VF +  +     D++    MID++ + +                       +  ++ 
Sbjct: 314  ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILR 373

Query: 523  VFDKMRAAGYY-----------ADSNVIA--LVLNAYGKLRDFEKADAVYREMQEEGCLF 383
            V+ +    G              + NV+    ++  YGK  + EKA  + +EMQ  G + 
Sbjct: 374  VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRG-IE 432

Query: 382  PDEVHFQ-MLSLYGEEREFDIVELLFQRLNADPNINKKELYHVVVGIYERANRLDDASRI 206
            P+ + +  ++S++G+  + D    LFQ+L +      + LY  ++  YER   +  A R+
Sbjct: 433  PNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRL 492

Query: 205  ISQI 194
            + ++
Sbjct: 493  LHEL 496