BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00028087
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27814.3| unnamed protein product [Vitis vinifera]              234   5e-60
ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containi...   234   5e-60
ref|XP_002534373.1| pentatricopeptide repeat-containing protein,...   144   6e-33
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   131   5e-29
ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28

>emb|CBI27814.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  234 bits (597), Expect = 5e-60
 Identities = 111/158 (70%), Positives = 133/158 (84%)
 Frame = -3

Query: 476 IWNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNV 297
           +WN LIRGYAD GPC+EA+ LY +MH +GL PD+YTFP VVR+CAV SA  EG++VHCN+
Sbjct: 95  LWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNI 154

Query: 296 LKNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGL 117
           +K+G   DV+VQ SLV MYSQ GETL  ELVFGEMVV+NIVSWT++IAG+VQN  F++GL
Sbjct: 155 VKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGL 214

Query: 116 SGFRDMMASGVQPNAVTLVSVLPACASIEFLNLGKLIH 3
             FR+M+ SG QPNAVTLVSVLPACA +EFLNLGKLIH
Sbjct: 215 GVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIH 252



 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 48/143 (33%), Positives = 76/143 (53%)
 Frame = -3

Query: 473 WNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNVL 294
           W  +I GY      +E + ++R+M  SG  P+  T  SV+ ACA       G+ +H   +
Sbjct: 197 WTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGI 256

Query: 293 KNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGLS 114
           K GV  DV +  +L+ +Y + G    +  +F  MVV+N+VSW ++IA + QN      + 
Sbjct: 257 KLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVK 316

Query: 113 GFRDMMASGVQPNAVTLVSVLPA 45
            FR M A  V  + +T+VSV+ A
Sbjct: 317 LFRRMQAEKVDFDYITMVSVISA 339


>ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  234 bits (597), Expect = 5e-60
 Identities = 111/158 (70%), Positives = 133/158 (84%)
 Frame = -3

Query: 476 IWNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNV 297
           +WN LIRGYAD GPC+EA+ LY +MH +GL PD+YTFP VVR+CAV SA  EG++VHCN+
Sbjct: 95  LWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNI 154

Query: 296 LKNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGL 117
           +K+G   DV+VQ SLV MYSQ GETL  ELVFGEMVV+NIVSWT++IAG+VQN  F++GL
Sbjct: 155 VKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGL 214

Query: 116 SGFRDMMASGVQPNAVTLVSVLPACASIEFLNLGKLIH 3
             FR+M+ SG QPNAVTLVSVLPACA +EFLNLGKLIH
Sbjct: 215 GVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIH 252



 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 55/157 (35%), Positives = 86/157 (54%)
 Frame = -3

Query: 473 WNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNVL 294
           W  +I GY      +E + ++R+M  SG  P+  T  SV+ ACA       G+ +H   +
Sbjct: 197 WTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGI 256

Query: 293 KNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGLS 114
           K GV  DV +  +L+ +Y + G    +  +F  MVV+N+VSW ++IA + QN      + 
Sbjct: 257 KLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVK 316

Query: 113 GFRDMMASGVQPNAVTLVSVLPACASIEFLNLGKLIH 3
            FR M A  V  + +T+VSV+ ACAS+  LN G+ +H
Sbjct: 317 LFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMH 353



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 47/144 (32%), Positives = 72/144 (50%)
 Frame = -3

Query: 473 WNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNVL 294
           WN +I  Y        A+ L+R M    +  D  T  SV+ ACA   A   GR +H  V 
Sbjct: 298 WNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVK 357

Query: 293 KNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGLS 114
           + G+ ++V +  +L+ MY++ G    +  VF  +  +++VSWTS+I     +G  E  L 
Sbjct: 358 RKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALK 417

Query: 113 GFRDMMASGVQPNAVTLVSVLPAC 42
            F  M   GV+PN+ T  +V  AC
Sbjct: 418 LFSRMKDEGVKPNSFTFAAVFTAC 441


>ref|XP_002534373.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525413|gb|EEF28011.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 207

 Score =  144 bits (364), Expect = 6e-33
 Identities = 68/117 (58%), Positives = 90/117 (76%)
 Frame = -3

Query: 476 IWNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNV 297
           +WN LIRGYAD GP QEA+ LY+ MH  G LPD+YTFP VVR+CAV SA  EG++V+CNV
Sbjct: 92  LWNTLIRGYADLGPYQEAVMLYKTMHHDGFLPDNYTFPFVVRSCAVISALKEGKEVYCNV 151

Query: 296 LKNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFE 126
           +KNG  +DV+ QC  + + S+ G+    +  FGE+VV+NIVSWT++ AG+VQNGLF+
Sbjct: 152 IKNGFDLDVFAQCFSLYVCSRWGDFEKGD-CFGEVVVRNIVSWTAVTAGYVQNGLFK 207


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  131 bits (330), Expect = 5e-29
 Identities = 66/158 (41%), Positives = 103/158 (65%)
 Frame = -3

Query: 476 IWNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNV 297
           +WN+LIRGYA  GP   AI LY  M   GL PD++T P V++AC+  SA  EGR +H  V
Sbjct: 115 LWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYV 174

Query: 296 LKNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGL 117
           +K+G   D++V  +L+ MY++ G  +++  VF ++VV++ V W S++A + QNG  ++ +
Sbjct: 175 IKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESI 234

Query: 116 SGFRDMMASGVQPNAVTLVSVLPACASIEFLNLGKLIH 3
           S  R+M A+GV+P   TLV+V+ + A +  L  G+ IH
Sbjct: 235 SLCREMAANGVRPTEATLVTVISSSADVACLPYGREIH 272



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 46/158 (29%), Positives = 84/158 (53%)
 Frame = -3

Query: 476 IWNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNV 297
           +WN ++  YA  G   E+I L R+M  +G+ P + T  +V+ + A  +    GR++H   
Sbjct: 216 LWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFG 275

Query: 296 LKNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGL 117
            ++G   +  V+ +L+ MY++ G    +  +F  +  K +VSW ++I G+  +GL    L
Sbjct: 276 WRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGAL 335

Query: 116 SGFRDMMASGVQPNAVTLVSVLPACASIEFLNLGKLIH 3
             F D M    +P+ +T V VL AC+    L+ G+ ++
Sbjct: 336 DLF-DKMRKEDRPDHITFVGVLAACSRGRLLDEGRALY 372


>ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  129 bits (324), Expect = 2e-28
 Identities = 71/156 (45%), Positives = 101/156 (64%)
 Frame = -3

Query: 470 NLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNVLK 291
           NLLI GYA       AI +YR   ++G +PD YTFP+V+++CA  S   E RQ H   +K
Sbjct: 78  NLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVK 137

Query: 290 NGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGLSG 111
            G++ D+YVQ +LV +YS  G+ + +  VF +M+V+++VSWT LI+G+V+ GLF + +S 
Sbjct: 138 TGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISL 197

Query: 110 FRDMMASGVQPNAVTLVSVLPACASIEFLNLGKLIH 3
           F  M    V+PN  T VS+L AC  +  LNLGK IH
Sbjct: 198 FLRM---NVEPNVGTFVSILGACGKLGRLNLGKGIH 230



 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 56/157 (35%), Positives = 82/157 (52%)
 Frame = -3

Query: 473 WNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNVL 294
           W  LI GY   G   EAI L+  M+     P+  TF S++ AC        G+ +H  V 
Sbjct: 178 WTGLISGYVKTGLFNEAISLFLRMNVE---PNVGTFVSILGACGKLGRLNLGKGIHGLVF 234

Query: 293 KNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGLS 114
           K     ++ V  +++ MY +     ++  +F EM  K+I+SWTS+I G VQ     + L 
Sbjct: 235 KCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLD 294

Query: 113 GFRDMMASGVQPNAVTLVSVLPACASIEFLNLGKLIH 3
            F  M ASG +P+ V L SVL ACAS+  L+ G+ +H
Sbjct: 295 LFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVH 331



 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 49/154 (31%), Positives = 78/154 (50%)
 Frame = -3

Query: 473 WNLLIRGYADKGPCQEAIYLYRDMHQSGLLPDDYTFPSVVRACAVESAFWEGRQVHCNVL 294
           W  +I G       +E++ L+  M  SG  PD     SV+ ACA       GR VH  + 
Sbjct: 276 WTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYID 335

Query: 293 KNGVFVDVYVQCSLVTMYSQGGETLNSELVFGEMVVKNIVSWTSLIAGFVQNGLFEKGLS 114
            + +  DV++  +LV MY++ G    ++ +F  M  KNI +W + I G   NG  ++ L 
Sbjct: 336 CHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALK 395

Query: 113 GFRDMMASGVQPNAVTLVSVLPACASIEFLNLGK 12
            F D++ SG +PN VT ++V  AC     ++ G+
Sbjct: 396 QFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGR 429