BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027392
         (563 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containi...   316   2e-84
ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containi...   314   5e-84
ref|XP_002520317.1| pentatricopeptide repeat-containing protein,...   314   7e-84
ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|2...   312   3e-83
gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thal...   309   2e-82

>ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  316 bits (809), Expect = 2e-84
 Identities = 149/187 (79%), Positives = 169/187 (90%)
 Frame = +1

Query: 1   EKVLTRFENAGMLTHQFFEWAGKQRNYDHSVRAYHAIIESMAKIRQYQIMWDLVNSMGSK 180
           E VL RFENAGML +QFFEWAGKQRNY HS+RAYH +IES+AKIRQYQIMWDLVN M S 
Sbjct: 47  ENVLKRFENAGMLAYQFFEWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSL 106

Query: 181 GMLNIETFCIIMRRYARCQKVEEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQ 360
            +LN+ETFCIIMR+YAR QKV+EAVYTFN+MEKY++ PNLAAFN LLSALCKSKNV KAQ
Sbjct: 107 KILNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQ 166

Query: 361 EIFDNMKERFSPDAKTYSILLDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILC 540
           EIF+ MK++F PD+KTYSILL+GWG+ PNLPKAREI+REMV +GC+PDIVTYGIMVDILC
Sbjct: 167 EIFNGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILC 226

Query: 541 KGGRVDE 561
           K GRVDE
Sbjct: 227 KAGRVDE 233



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 34/120 (28%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
 Frame = +1

Query: 202 FCIIMRRYARCQKVEEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMK 381
           + +++  Y    ++E+AVYTF  ME+  I  ++A +N L+ A CK   ++ A  + + M 
Sbjct: 253 YSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMD 312

Query: 382 -ERFSPDAKTYSILLDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILCKGGRVD 558
            +   P+++T +I+L+      +  +A  ++R M+KV C+PD  TY +M+ + C+  +++
Sbjct: 313 CKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKV-CDPDADTYTMMIKMFCENDKLE 371



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
 Frame = +1

Query: 67  KQRNYDHSVRAYHAIIESMAKIRQYQIMWDLVNSMGSKGML-NIETFCIIMRRYARCQKV 243
           ++   +  V  Y+A+I +  K+ + +  + ++N M  KG+  N  T  II+     C   
Sbjct: 277 ERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDT 336

Query: 244 EEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMK-ERFSPDAKTYSIL 420
           +EA   F  M K    P+   +  ++   C++  +  A +++  M+ ++F P   T+S+L
Sbjct: 337 DEAFRVFRRMIKV-CDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVL 395

Query: 421 LDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILCKGGRVD 558
           ++G  +  N  KA  +  EM++ G  P  VT+G +  +L K GR D
Sbjct: 396 INGLCKKGNASKACILLEEMIEKGIRPSSVTFGKLKQLLIKEGRED 441


>ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
           gi|449499065|ref|XP_004160711.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  314 bits (805), Expect = 5e-84
 Identities = 148/187 (79%), Positives = 169/187 (90%)
 Frame = +1

Query: 1   EKVLTRFENAGMLTHQFFEWAGKQRNYDHSVRAYHAIIESMAKIRQYQIMWDLVNSMGSK 180
           E VL RFENAGML ++FFEWA KQRNY HSVRAYH++IES+AKIRQYQ++WDLVN+M +K
Sbjct: 26  EPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMRNK 85

Query: 181 GMLNIETFCIIMRRYARCQKVEEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQ 360
            +LN+E FCIIMR+YAR QKVEEAVYTFNVMEKYN+ PN+AAFNGLLSALCKSKNVRKAQ
Sbjct: 86  EILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQ 145

Query: 361 EIFDNMKERFSPDAKTYSILLDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILC 540
           EIFDNMK++F PD+KTYSIL++GWGR PNLPKAREIYREM+  GC PD VTY IMVD+LC
Sbjct: 146 EIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLC 205

Query: 541 KGGRVDE 561
           K GRVDE
Sbjct: 206 KAGRVDE 212



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 33/120 (27%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
 Frame = +1

Query: 202 FCIIMRRYARCQKVEEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMK 381
           + +++  Y    ++E+AV TF  ME+  +  ++AA+N L+SA CK+  ++    +  +M 
Sbjct: 232 YSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMD 291

Query: 382 -ERFSPDAKTYSILLDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILCKGGRVD 558
            +  +P+++T +I+++         +A +I+R M+KV CEPD+ +Y +++ + C    +D
Sbjct: 292 LKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKV-CEPDVDSYTMIIKMFCGRKELD 350



 Score = 61.6 bits (148), Expect = 8e-08
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
 Frame = +1

Query: 91  VRAYHAIIESMAKIRQYQIMWDLVNSMGSKGML-NIETFCIIMRRYARCQKVEEAVYTFN 267
           V AY+A+I +  K  + + ++ ++  M  KG+  N  T  II+       + +EA   F 
Sbjct: 264 VAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFR 323

Query: 268 VMEKYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMKER-FSPDAKTYSILLDGWGRDP 444
            M K    P++ ++  ++   C  K +  A +I+  MK++ F P   T+S+L++G  +  
Sbjct: 324 RMIKV-CEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIG 382

Query: 445 NLPKAREIYREMVKVGCEPDIVTYGIMVDILCKGGRVD 558
           N  +A  +  EM++ G  P   T+G +  +L K GR D
Sbjct: 383 NATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKD 420


>ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540536|gb|EEF42103.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 439

 Score =  314 bits (804), Expect = 7e-84
 Identities = 148/187 (79%), Positives = 168/187 (89%)
 Frame = +1

Query: 1   EKVLTRFENAGMLTHQFFEWAGKQRNYDHSVRAYHAIIESMAKIRQYQIMWDLVNSMGSK 180
           E VL RFENAGM+ ++FFEWA KQ +Y HSVRAYH +IES+AKIRQYQIMWDL+N+M  K
Sbjct: 26  EDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAKIRQYQIMWDLINAMKRK 85

Query: 181 GMLNIETFCIIMRRYARCQKVEEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQ 360
            MLN+ETFCIIMR+YAR QK+EEAVYTFNVMEKY++ PNLAAFNGL SALCKSKNVRKAQ
Sbjct: 86  RMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQ 145

Query: 361 EIFDNMKERFSPDAKTYSILLDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILC 540
           EIFD+ K+RF PD+KTY+ILL+GWG+ PNLPKAREI+REMV VGC PDIVTYGIMVDILC
Sbjct: 146 EIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILC 205

Query: 541 KGGRVDE 561
           K GRVDE
Sbjct: 206 KAGRVDE 212



 Score = 68.6 bits (166), Expect = 7e-10
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
 Frame = +1

Query: 91  VRAYHAIIESMAKIRQYQIMWDLVNSMGSKGML-NIETFCIIMRRYARCQKVEEAVYTFN 267
           V AY+A+I +  K+ +++ ++ ++N M  KGM  N  T  II+       + +EA   F 
Sbjct: 264 VAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFR 323

Query: 268 VMEKYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMKER-FSPDAKTYSILLDGWGRDP 444
            M K    P+   +  ++   C+   +  A +++  MK++ F P   T+S+L++G   + 
Sbjct: 324 RMIKV-CEPDADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEG 382

Query: 445 NLPKAREIYREMVKVGCEPDIVTYGIMVDILCKGGRVD 558
           ++  A  +  +M++ G  P  VT+G +  +L K GR D
Sbjct: 383 DVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGRED 420



 Score = 68.2 bits (165), Expect = 9e-10
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
 Frame = +1

Query: 202 FCIIMRRYARCQKVEEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMK 381
           + +++  Y    ++E+AV TF  MEK  +  ++AA+N L+ A CK    +    + + M 
Sbjct: 232 YSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMD 291

Query: 382 ER-FSPDAKTYSILLDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILCKGGRVD 558
            +   P+++T +I+L+         +A  ++R M+KV CEPD  TY +M+ + C+   ++
Sbjct: 292 YKGMQPNSRTLNIILNNLIARGETDEAFRVFRRMIKV-CEPDADTYTMMIKMFCERNELE 350


>ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|222856907|gb|EEE94454.1|
           predicted protein [Populus trichocarpa]
          Length = 440

 Score =  312 bits (799), Expect = 3e-83
 Identities = 143/187 (76%), Positives = 171/187 (91%)
 Frame = +1

Query: 1   EKVLTRFENAGMLTHQFFEWAGKQRNYDHSVRAYHAIIESMAKIRQYQIMWDLVNSMGSK 180
           E VL +FENAGM+ ++FFEWA KQR+Y+HSV+A+H +I+S+AKIRQYQ+MWD+V  M SK
Sbjct: 26  EDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTVIDSLAKIRQYQLMWDVVKVMKSK 85

Query: 181 GMLNIETFCIIMRRYARCQKVEEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQ 360
            M+N+ETFCIIMR+YAR QKVEEAVYTFN+M+KY++ PNLAAFNGLLSALCKSKNVRKAQ
Sbjct: 86  RMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQ 145

Query: 361 EIFDNMKERFSPDAKTYSILLDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILC 540
           EIFD++K+RF PD+KTYSILL+GWG+DPNLPKAREI+REMV  GC PDIVTYGIMVD+LC
Sbjct: 146 EIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLC 205

Query: 541 KGGRVDE 561
           K GRVDE
Sbjct: 206 KAGRVDE 212



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
 Frame = +1

Query: 91  VRAYHAIIESMAKIRQYQIMWDLVNSMGSKGML-NIETFCIIMRRYARCQKVEEAVYTFN 267
           V  Y+A+I +  K  + + ++ ++N M  KG+  N  TF II+       + +EA   F 
Sbjct: 264 VAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFL 323

Query: 268 VMEKYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMK-ERFSPDAKTYSILLDGWGRDP 444
            M K    P+   +  ++   C+   ++KA +++  MK +RF P   T+ +L++G     
Sbjct: 324 RMIKV-CEPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKG 382

Query: 445 NLPKAREIYREMVKVGCEPDIVTYGIMVDILCKGGRVD 558
           ++ +A  +  EM++ G  P  VT+G +  +L K GR D
Sbjct: 383 DVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGRED 420


>gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  309 bits (792), Expect = 2e-82
 Identities = 138/187 (73%), Positives = 169/187 (90%)
 Frame = +1

Query: 1   EKVLTRFENAGMLTHQFFEWAGKQRNYDHSVRAYHAIIESMAKIRQYQIMWDLVNSMGSK 180
           E VL RF NAG+LT++FF+W+ KQR+Y+HSVRAYH +IES AKIRQY++MWDL+N+M  K
Sbjct: 68  EDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKK 127

Query: 181 GMLNIETFCIIMRRYARCQKVEEAVYTFNVMEKYNIHPNLAAFNGLLSALCKSKNVRKAQ 360
            MLN+ETFCI+MR+YAR QKV+EA+Y FNVMEKY++ PNL AFNGLLSALCKSKNVRKAQ
Sbjct: 128 KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQ 187

Query: 361 EIFDNMKERFSPDAKTYSILLDGWGRDPNLPKAREIYREMVKVGCEPDIVTYGIMVDILC 540
           E+F+NM++RF+PD+KTYSILL+GWG++PNLPKARE++REM+  GC PDIVTY IMVDILC
Sbjct: 188 EVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILC 247

Query: 541 KGGRVDE 561
           K GRVDE
Sbjct: 248 KAGRVDE 254



 Score = 59.3 bits (142), Expect = 4e-07
 Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
 Frame = +1

Query: 91  VRAYHAIIESMAKIRQYQIMWDLVNSMGSKGMLNIETFC-IIMRRYARCQKVEEAVYTFN 267
           V  ++++I +  K  + + ++ ++  M SKG+      C II+R      + +EA   F 
Sbjct: 306 VAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFR 365

Query: 268 VMEKYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMKER-FSPDAKTYSILLDGWGRDP 444
            M K    P+   +  ++   C+ K +  A +++  M+++   P   T+S+L++G   + 
Sbjct: 366 KMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEER 424

Query: 445 NLPKAREIYREMVKVGCEPDIVTYGIMVDILCKGGRVD 558
              KA  +  EM+++G  P  VT+G +  +L K  R D
Sbjct: 425 TTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEERED 462



 Score = 58.2 bits (139), Expect = 9e-07
 Identities = 31/154 (20%), Positives = 75/154 (48%), Gaps = 1/154 (0%)
 Frame = +1

Query: 97  AYHAIIESMAKIRQYQIMWDLVNSMGSKGMLNIETFCIIMRRYARCQKVEEAVYTFNVME 276
           A++ ++ ++ K +  +   ++  +M  +   + +T+ I++  + +   + +A   F  M 
Sbjct: 169 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMI 228

Query: 277 KYNIHPNLAAFNGLLSALCKSKNVRKAQEIFDNMKERF-SPDAKTYSILLDGWGRDPNLP 453
               HP++  ++ ++  LCK+  V +A  I  +M      P    YS+L+  +G +  L 
Sbjct: 229 DAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLE 288

Query: 454 KAREIYREMVKVGCEPDIVTYGIMVDILCKGGRV 555
           +A + + EM + G + D+  +  ++   CK  R+
Sbjct: 289 EAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 322