BLASTX nr result

ID: Bupleurum21_contig00027303 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027303
         (455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|2...   101   5e-20
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   100   2e-19
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...    99   3e-19
ref|XP_002332341.1| predicted protein [Populus trichocarpa] gi|2...    98   6e-19
ref|XP_002332212.1| predicted protein [Populus trichocarpa] gi|2...    98   8e-19

>ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|222858226|gb|EEE95773.1|
            predicted protein [Populus trichocarpa]
          Length = 809

 Score =  101 bits (252), Expect = 5e-20
 Identities = 53/134 (39%), Positives = 74/134 (55%)
 Frame = +3

Query: 18   DSSPWCVLGDFNSCINPSESDGRNTRWNTGMTEMKHFMDSLGLVDLKYIGCTYTWWDSNE 197
            +S+PW ++GDFN+  N S+  G +T W   M  +   +    + DL+Y G  YTW +   
Sbjct: 656  ESTPWILMGDFNAIRNQSDRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTWSNQCP 715

Query: 198  SNPLVCKLDRVLCNAQWLTEFTEYCANFLPRGLSDHSPASVWLGVRRSKFNKPFQIFQHV 377
             N ++ KLDRVL N +W  +F    A FLP G+SDHSP  V +        KPF+ F   
Sbjct: 716  ENLIMRKLDRVLVNEKWNLKFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMW 775

Query: 378  IDHPEFLNEVAKVW 419
            +DH EF+  V KVW
Sbjct: 776  MDHDEFMPLVKKVW 789


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  100 bits (248), Expect = 2e-19
 Identities = 44/131 (33%), Positives = 72/131 (54%)
 Frame = +3

Query: 27  PWCVLGDFNSCINPSESDGRNTRWNTGMTEMKHFMDSLGLVDLKYIGCTYTWWDSNESNP 206
           PW +LGDFN  ++P ++    +R   GM E +  + +  + DL + G  YTWW++ E+NP
Sbjct: 137 PWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNP 196

Query: 207 LVCKLDRVLCNAQWLTEFTEYCANFLPRGLSDHSPASVWLGVRRSKFNKPFQIFQHVIDH 386
           +  K+DR+L N  WL        +F     SDH P+ V +  +    NKPF++   ++ H
Sbjct: 197 IAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHH 256

Query: 387 PEFLNEVAKVW 419
           PEF+ ++   W
Sbjct: 257 PEFIEKIRVTW 267


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 53/134 (39%), Positives = 72/134 (53%)
 Frame = +3

Query: 18  DSSPWCVLGDFNSCINPSESDGRNTRWNTGMTEMKHFMDSLGLVDLKYIGCTYTWWDSNE 197
           +S+PW ++GDFN+  N S+  G +T W   M  +   +    + DL Y G  YTW +   
Sbjct: 132 ESTPWILMGDFNAIRNQSDKLGGSTTWAGTMHRLDTCIREAKVDDLWYSGMHYTWSNQCP 191

Query: 198 SNPLVCKLDRVLCNAQWLTEFTEYCANFLPRGLSDHSPASVWLGVRRSKFNKPFQIFQHV 377
            N ++ KLDRVL N +W   F    A FLP G+SDHSP  V +        KPF+ F   
Sbjct: 192 ENLIMRKLDRVLVNEKWNLNFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMW 251

Query: 378 IDHPEFLNEVAKVW 419
           +DH EF+  V KVW
Sbjct: 252 MDHDEFMPLVKKVW 265


>ref|XP_002332341.1| predicted protein [Populus trichocarpa] gi|222831908|gb|EEE70385.1|
           predicted protein [Populus trichocarpa]
          Length = 421

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 52/133 (39%), Positives = 72/133 (54%)
 Frame = +3

Query: 18  DSSPWCVLGDFNSCINPSESDGRNTRWNTGMTEMKHFMDSLGLVDLKYIGCTYTWWDSNE 197
           +S+PW ++GDFN+  N S+  G +T W   M  +   +    + DL+Y G  YTW +   
Sbjct: 223 ESTPWILMGDFNAIRNQSDRLGGSTTWAGTMDRLDTCIREAKIDDLRYSGMHYTWSNQCP 282

Query: 198 SNPLVCKLDRVLCNAQWLTEFTEYCANFLPRGLSDHSPASVWLGVRRSKFNKPFQIFQHV 377
            N ++ KLDRVL N +W   F    A FLP G+SDHSP  V +        KPF+ F   
Sbjct: 283 ENLIIRKLDRVLVNEKWNLNFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMW 342

Query: 378 IDHPEFLNEVAKV 416
           +DH EF+  V KV
Sbjct: 343 MDHDEFMPLVKKV 355


>ref|XP_002332212.1| predicted protein [Populus trichocarpa] gi|222874876|gb|EEF12007.1|
           predicted protein [Populus trichocarpa]
          Length = 603

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
 Frame = +3

Query: 18  DSSPWCVLGDFNSCINPSESDGRNTRWNTGMTEMKHFMDSLGLVDLKYIGCTYTWWDSNE 197
           +S+PW ++GDFN+  N S+  G +T W   M  +   +    + DL+Y G  YTW +   
Sbjct: 449 ESTPWILMGDFNAIRNQSDRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTWLNQCP 508

Query: 198 SNPLVCKLDRVLCNAQWLTEFTEYCANFLPRGLSDHSPASVWLGVRRSKFNKPFQIFQHV 377
            N ++ KLDRVL N +W   F    A FLP G+SDHSP  V +        KPF+ F   
Sbjct: 509 ENLIMRKLDRVLVNEKWNLNFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMW 568

Query: 378 IDHPEFLNEVAKV-WATPVF 434
           +DH EF+  V KV W    F
Sbjct: 569 MDHDEFMPLVKKVCWILTCF 588


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