BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027117
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...    77   1e-12
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...    74   2e-11
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...    74   2e-11
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...    73   3e-11
ref|XP_002532948.1| RNA polymerase II transcription factor B sub...    72   6e-11

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 44/87 (50%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
 Frame = +3

Query: 54  ATGVNSCGYIYDSSLAPPNKKAEA---------LLQKLEEFVIKDEELSAEXXXXXXXXX 206
           ATG NSC +I+DSS  P N   E          LLQKLEEFV  DE+LS E         
Sbjct: 61  ATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSS 120

Query: 207 XXXXXXXMALCYIQRVFRSGSHHPQPR 287
                  MALCYIQRVFR+G  HPQPR
Sbjct: 121 LLSGSLSMALCYIQRVFRTGPLHPQPR 147


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 43/87 (49%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
 Frame = +3

Query: 54  ATGVNSCGYIYDSSLAPPNKKAEA---------LLQKLEEFVIKDEELSAEXXXXXXXXX 206
           A+G N+C YIYDSS       +E          LLQKLEEF+IKDE+L  E         
Sbjct: 53  ASGYNTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSS 112

Query: 207 XXXXXXXMALCYIQRVFRSGSHHPQPR 287
                  MALCYIQRVFRSG  HPQPR
Sbjct: 113 LLSGSLSMALCYIQRVFRSGPLHPQPR 139


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
           thaliana] gi|21537277|gb|AAM61618.1| unknown
           [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
           At1g18340 [Arabidopsis thaliana]
           gi|332191584|gb|AEE29705.1| transcription initiation
           factor TFIIH subunit H3 [Arabidopsis thaliana]
          Length = 301

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 46/90 (51%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
 Frame = +3

Query: 54  ATGVNSCGYIYDSSLAPPNKKAEA-----------LLQKLEEFVIKDEELSAEXXXXXXX 200
           ATG +SC YIYDSSL   +   E+           LL+KLEEFV KDEELS E       
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 201 XXXXXXXXX-MALCYIQRVFRSGSHHPQPR 287
                     MALCYIQRVFRSG  HPQPR
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPR 150


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 45/90 (50%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
 Frame = +3

Query: 54  ATGVNSCGYIYDSSLAPPNKKAEA-----------LLQKLEEFVIKDEELSAEXXXXXXX 200
           ATG +SC YIYDSSL   +   E+           LL+KLE+FV KDEELS E       
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRI 120

Query: 201 XXXXXXXXX-MALCYIQRVFRSGSHHPQPR 287
                     MALCYIQRVFRSG  HPQPR
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPR 150


>ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
           communis] gi|223527277|gb|EEF29432.1| RNA polymerase II
           transcription factor B subunit, putative [Ricinus
           communis]
          Length = 266

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 42/87 (48%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
 Frame = +3

Query: 54  ATGVNSCGYIYDSSLAPPNKKAEA--------LLQKLEEFVIKDEELS-AEXXXXXXXXX 206
           A G NSC YIYDSSL   +   E         LLQKLE+F+I+DE+L   E         
Sbjct: 61  ANGYNSCDYIYDSSLVMNHSSDEGRIPALYSDLLQKLEDFMIRDEKLGKGEESKRKIASS 120

Query: 207 XXXXXXXMALCYIQRVFRSGSHHPQPR 287
                  MALCYIQR+FRSG  HPQPR
Sbjct: 121 LLSGSLSMALCYIQRIFRSGPLHPQPR 147