BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027051
         (513 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17913.3| unnamed protein product [Vitis vinifera]               84   1e-14
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]      84   1e-14
dbj|BAF03051.1| DNA ligase IV [Populus nigra]                          78   7e-13
ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|2...    74   1e-11
ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max]         66   3e-09

>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
 Frame = +3

Query: 3    KRRGRPAKTSTKSKKI---QPMRLRARVGNKRAKICENDSDVDACSEDNSKKESDIGRD- 170
            ++RGRPA  STK  K    Q  R R R+G K  KI EN+SD     E   ++ + +G + 
Sbjct: 975  RKRGRPAGPSTKKGKAGFSQARRTRPRIG-KPPKIYENESDASDSGEKMEEEGTKMGGNH 1033

Query: 171  -IQDEDELLDKEAVGHEILDHSELSQRGKAVEDKDIEDIEQSKSVDGIEDIEQSKSVDGV 347
             I   +     E    EI++ SE SQRGK  E +   D  + K +D  +DIE        
Sbjct: 1034 AIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVREKWLDRAQDIELDS----- 1088

Query: 348  GGYKNGIESNEKLEKSETMVDPFEAILLDMIPSLGTQ----TSSVRESKQQPSDANPRP 512
               +N +++++K EK E MVDP +A+LLDMIPSLG +    T+ + + ++ P +    P
Sbjct: 1089 ---ENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVEQGAEP 1144


>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
          Length = 1162

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
 Frame = +3

Query: 3    KRRGRPAKTSTKSKKI---QPMRLRARVGNKRAKICENDSDVDACSEDNSKKESDIGRD- 170
            ++RGRPA  STK  K    Q  R R R+G K  KI EN+SD     E   ++ + +G + 
Sbjct: 974  RKRGRPAGPSTKKGKAGFSQARRTRPRIG-KPPKIYENESDASDSGEKMEEEGTKMGGNH 1032

Query: 171  -IQDEDELLDKEAVGHEILDHSELSQRGKAVEDKDIEDIEQSKSVDGIEDIEQSKSVDGV 347
             I   +     E    EI++ SE SQRGK  E +   D  + K +D  +DIE        
Sbjct: 1033 AIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVREKWLDRAQDIELDS----- 1087

Query: 348  GGYKNGIESNEKLEKSETMVDPFEAILLDMIPSLGTQ----TSSVRESKQQPSDANPRP 512
               +N +++++K EK E MVDP +A+LLDMIPSLG +    T+ + + ++ P +    P
Sbjct: 1088 ---ENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVEQGAEP 1143


>dbj|BAF03051.1| DNA ligase IV [Populus nigra]
          Length = 1319

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
 Frame = +3

Query: 12   GRPAKTSTKSKKI---QPMRLRARVGNKRAKICENDSDVDACSEDNSKKESDIGR---DI 173
            GRPA  ST+  KI   Q  R R R+ NK AKI E  S+ ++C  D+  +E+++     +I
Sbjct: 1109 GRPAGGSTRKGKIGAGQARRTRTRIANKPAKILEEKSE-ESCLHDDEIEENEMSEGNEEI 1167

Query: 174  QDEDELLDKEAVGHEILDHSELSQRGKAVEDKDIEDIEQSKSVDGIEDIEQSKSVDGVGG 353
               D   + +    ++++ SE S+RGKA E    E+    + +D   D+E S      G 
Sbjct: 1168 HGPDSKYNLDIQQTKMVEDSESSRRGKAKE-ATAEENRHEEWLDKAPDVEMS------GR 1220

Query: 354  YKNGIESNEKLEKSETMVDPFEAILLDMIPSLG 452
            Y + +   EK EK E MVDP  AIL+DMIPSLG
Sbjct: 1221 YYDQV--TEKPEKLEVMVDPVHAILMDMIPSLG 1251


>ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1|
            predicted protein [Populus trichocarpa]
          Length = 1242

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
 Frame = +3

Query: 3    KRRGRPAKTSTKSKKI---QPMRLRARVGNKRAKICENDSDVDACSEDNSKKESDIGRDI 173
            K  GRPA  STK  KI   Q +R R R+ NK AKI E  S+ ++C  D+  +E+++    
Sbjct: 1029 KPAGRPAGGSTKKGKIGAGQALRTRTRIANKPAKILEEKSE-ESCLHDDEIEENEMSEGN 1087

Query: 174  QDEDELLDK---EAVGHEILDHSELSQRGKAVEDKDIEDIEQSKSVDGIEDIEQSKSVDG 344
            ++    + K   +    + ++ SE S+R KA E+   E+    + +D   D+E S+    
Sbjct: 1088 EEIHGPVSKYNLDIQQTKTVEDSESSRRDKAKEET-AEENRHEEWLDKAPDVEMSER--- 1143

Query: 345  VGGYKNGIESNEKLEKSETMVDPFEAILLDMIPSLG 452
               Y + +   EK EK E MVDP  AIL+DMIPSLG
Sbjct: 1144 ---YYDQV--TEKPEKLEVMVDPVHAILMDMIPSLG 1174


>ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max]
          Length = 1171

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 20/190 (10%)
 Frame = +3

Query: 3    KRRGRPAKTSTKSKKI----QPMRLRARVGNKRAKICENDSDVDACSEDNSKKESDIG-- 164
            ++RGRPA +  K  K     Q  R R ++  K AKICE +S  ++ S      E +I   
Sbjct: 973  RKRGRPAGSGIKKVKQPAVKQARRARPQIAKKPAKICEYESSDESDSHGKRPIEQEIDTR 1032

Query: 165  -------RDIQDEDELLDKEAVGHEILDHSELSQRGKAVEDKDIEDIEQSKSVDGIEDIE 323
                   +   +  E   +E V  ++ +  + S++ K  + KD+ D E+ + +  + +IE
Sbjct: 1033 AGSLDFYKKRSEPQETEKRENV--QVAEIEKNSEQNKLDKQKDLNDNERERML--VPEIE 1088

Query: 324  QSKSVDGVGGYKNGIESNEKLEKSETMVDPFEAILLDMIPSLGTQ------TSSVRESK- 482
             S         ++  ++NE  EK E   DP +A+L DMIPSL TQ        SVRE K 
Sbjct: 1089 MSD--------RHNEQNNEVTEKLEISADPLQAMLFDMIPSLATQKVEQPMNRSVREEKL 1140

Query: 483  QQPSDANPRP 512
             + S+A   P
Sbjct: 1141 PETSNAEAEP 1150