BLASTX nr result

ID: Bupleurum21_contig00027001 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027001
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA96203.1| retrotransposon protein, putative, unclassified, ...    98   8e-19
gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japo...    98   8e-19
gb|EEC66671.1| hypothetical protein OsI_32959 [Oryza sativa Indi...    97   1e-18
dbj|BAM28750.1| reverse transcriptase-like protein, partial [Cam...    96   2e-18
gb|AAM93462.1| putative reverse transcriptase [Oryza sativa Japo...    96   3e-18

>gb|ABA96203.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1378

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 42/101 (41%), Positives = 65/101 (64%)
 Frame = -3

Query: 312 KCKGGLAFRNLYGYNVALMAKHVWNFIHNPQSLVSRLYKAKYFPDSHILQARVSSGSSFI 133
           K KGG+ FR+L  +N+AL+AK VW  + +P SL +R+ +A+Y+ D  +L AR+ SGSS+ 
Sbjct: 312 KGKGGMGFRDLQSFNLALLAKQVWRLLSDPDSLCARVLRARYYRDGKLLNARMKSGSSYT 371

Query: 132 WQGIITARNEVLQGYRWVLGNGESINCFKDPWLAGKGDFKV 10
           WQ I+       QGY W +G+G  I  ++D W+ G  + K+
Sbjct: 372 WQSILAGLQCFKQGYIWRVGDGTQIKIWEDNWIPGSHNMKI 412


>gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japonica Group]
          Length = 1395

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 42/101 (41%), Positives = 65/101 (64%)
 Frame = -3

Query: 312 KCKGGLAFRNLYGYNVALMAKHVWNFIHNPQSLVSRLYKAKYFPDSHILQARVSSGSSFI 133
           K KGG+ FR+L  +N+AL+AK VW  + +P SL +R+ +A+Y+ D  +L AR+ SGSS+ 
Sbjct: 342 KGKGGMGFRDLQSFNLALLAKQVWRLLSDPDSLCARVLRARYYRDGKLLNARMKSGSSYT 401

Query: 132 WQGIITARNEVLQGYRWVLGNGESINCFKDPWLAGKGDFKV 10
           WQ I+       QGY W +G+G  I  ++D W+ G  + K+
Sbjct: 402 WQSILAGLQCFKQGYIWRVGDGTQIKIWEDNWIPGSHNMKI 442


>gb|EEC66671.1| hypothetical protein OsI_32959 [Oryza sativa Indica Group]
          Length = 697

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 43/93 (46%), Positives = 62/93 (66%)
 Frame = -3

Query: 312 KCKGGLAFRNLYGYNVALMAKHVWNFIHNPQSLVSRLYKAKYFPDSHILQARVSSGSSFI 133
           K +GGLAFR+L+ +N+A++A+  W  I NP SL SRL KAKYFP+ ++L A+     S+ 
Sbjct: 369 KSQGGLAFRDLHSFNIAMLARQGWRLIQNPDSLCSRLLKAKYFPNCNVLDAQSRKQMSYS 428

Query: 132 WQGIITARNEVLQGYRWVLGNGESINCFKDPWL 34
           W+ I+     + +G  W +GNGE IN + DPWL
Sbjct: 429 WRSILKGIQLLRKGVIWRVGNGEHINIWSDPWL 461


>dbj|BAM28750.1| reverse transcriptase-like protein, partial [Camellia sinensis var.
           sinensis]
          Length = 255

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 45/101 (44%), Positives = 63/101 (62%)
 Frame = -3

Query: 312 KCKGGLAFRNLYGYNVALMAKHVWNFIHNPQSLVSRLYKAKYFPDSHILQARVSSGSSFI 133
           K +GG+ FR L  +N AL+AK  W  +  PQSLV+R++KA+YFP +  L A V S  SF 
Sbjct: 97  KLQGGMGFRCLQXFNSALLAKQCWRLVQRPQSLVARVFKARYFPQTSFLDALVGSNPSFT 156

Query: 132 WQGIITARNEVLQGYRWVLGNGESINCFKDPWLAGKGDFKV 10
           W+ I+ +R+ +  G RW +GNG SI+   D W+     FKV
Sbjct: 157 WRSIVGSRSLLNAGLRWRVGNGASISVKYDKWVPRPHSFKV 197


>gb|AAM93462.1| putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 566

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 42/93 (45%), Positives = 61/93 (65%)
 Frame = -3

Query: 312 KCKGGLAFRNLYGYNVALMAKHVWNFIHNPQSLVSRLYKAKYFPDSHILQARVSSGSSFI 133
           K +GGL FR+L+ +N+A++A+  W  I NP SL SRL KAKYFP+ ++L A+     S+ 
Sbjct: 238 KSQGGLGFRDLHSFNIAMLARQGWRLIQNPDSLCSRLLKAKYFPNCNVLDAQSRKQMSYS 297

Query: 132 WQGIITARNEVLQGYRWVLGNGESINCFKDPWL 34
           W+ I+     + +G  W +GNGE IN + DPWL
Sbjct: 298 WRSILKGIQLLRKGVIWRVGNGEHINIWSDPWL 330


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