BLASTX nr result

ID: Bupleurum21_contig00026936 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026936
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268...   174   7e-42
emb|CBI16834.3| unnamed protein product [Vitis vinifera]              174   7e-42
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu...   154   5e-36
ref|XP_002312652.1| predicted protein [Populus trichocarpa] gi|2...   142   4e-32
ref|XP_002315647.1| predicted protein [Populus trichocarpa] gi|2...   128   4e-28

>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
           vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
           uncharacterized protein LOC100268141 isoform 2 [Vitis
           vinifera]
          Length = 647

 Score =  174 bits (441), Expect = 7e-42
 Identities = 83/132 (62%), Positives = 98/132 (74%)
 Frame = +1

Query: 13  HDAQAPNLGFQGSTSLAQKGVVEYVDMSSKVTTVSMPLLNPNTDVQRGISQVPSNYVNAD 192
           HD Q  NLGFQGST + QK   E  D+  K+   S P+LN  T   R + Q+ SN +  +
Sbjct: 148 HDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMN 207

Query: 193 ANMNRPMANDNLIRPAAENGATMLFVGELNWWTTDAEIERAVSYYGRVKEIKFFDERASG 372
            N+NRPM N+N IRPA +NGATMLFVGEL+WWTTDAE+E  +S YGRVKEIKFFDERASG
Sbjct: 208 VNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASG 267

Query: 373 KSKGFCQVEFYD 408
           KSKG+CQVEFYD
Sbjct: 268 KSKGYCQVEFYD 279


>emb|CBI16834.3| unnamed protein product [Vitis vinifera]
          Length = 491

 Score =  174 bits (441), Expect = 7e-42
 Identities = 83/132 (62%), Positives = 98/132 (74%)
 Frame = +1

Query: 13  HDAQAPNLGFQGSTSLAQKGVVEYVDMSSKVTTVSMPLLNPNTDVQRGISQVPSNYVNAD 192
           HD Q  NLGFQGST + QK   E  D+  K+   S P+LN  T   R + Q+ SN +  +
Sbjct: 130 HDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMN 189

Query: 193 ANMNRPMANDNLIRPAAENGATMLFVGELNWWTTDAEIERAVSYYGRVKEIKFFDERASG 372
            N+NRPM N+N IRPA +NGATMLFVGEL+WWTTDAE+E  +S YGRVKEIKFFDERASG
Sbjct: 190 VNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASG 249

Query: 373 KSKGFCQVEFYD 408
           KSKG+CQVEFYD
Sbjct: 250 KSKGYCQVEFYD 261


>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
           gi|223546091|gb|EEF47594.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 644

 Score =  154 bits (390), Expect = 5e-36
 Identities = 76/132 (57%), Positives = 98/132 (74%)
 Frame = +1

Query: 13  HDAQAPNLGFQGSTSLAQKGVVEYVDMSSKVTTVSMPLLNPNTDVQRGISQVPSNYVNAD 192
           +D+QA N+GFQGSTS      V+  DM++K++    P+  PN  V R I Q+P++ +N +
Sbjct: 141 NDSQARNMGFQGSTSGPSNIGVDPSDMNNKISNDPTPV--PNAGVPRVIPQLPASQMNMN 198

Query: 193 ANMNRPMANDNLIRPAAENGATMLFVGELNWWTTDAEIERAVSYYGRVKEIKFFDERASG 372
            + NR   N+N IRP  ENG+TML+VGEL+WWTTDAE+E  +S YG VKEIKFFDERASG
Sbjct: 199 MDTNRSATNENQIRPPLENGSTMLYVGELHWWTTDAELENVLSQYGMVKEIKFFDERASG 258

Query: 373 KSKGFCQVEFYD 408
           KSKG+CQVEFYD
Sbjct: 259 KSKGYCQVEFYD 270


>ref|XP_002312652.1| predicted protein [Populus trichocarpa] gi|222852472|gb|EEE90019.1|
           predicted protein [Populus trichocarpa]
          Length = 619

 Score =  142 bits (357), Expect = 4e-32
 Identities = 70/133 (52%), Positives = 91/133 (68%)
 Frame = +1

Query: 10  AHDAQAPNLGFQGSTSLAQKGVVEYVDMSSKVTTVSMPLLNPNTDVQRGISQVPSNYVNA 189
           +HD Q  N+GFQ ST +     V+  DMS K      PL    +   RG  Q+  N ++ 
Sbjct: 135 SHDVQVRNMGFQKSTPVPPGIGVDPSDMSRKNAIEPEPLPITGSAGPRGAPQMQVNQMHM 194

Query: 190 DANMNRPMANDNLIRPAAENGATMLFVGELNWWTTDAEIERAVSYYGRVKEIKFFDERAS 369
            A++NRP+ N+N +RP  ENG+T L+VGEL+WWTTDAE+E   S +GRVKEIKFFDERAS
Sbjct: 195 SADVNRPVVNENQVRPPIENGSTTLYVGELHWWTTDAELESFASQFGRVKEIKFFDERAS 254

Query: 370 GKSKGFCQVEFYD 408
           GKSKG+CQV+FY+
Sbjct: 255 GKSKGYCQVDFYE 267


>ref|XP_002315647.1| predicted protein [Populus trichocarpa] gi|222864687|gb|EEF01818.1|
           predicted protein [Populus trichocarpa]
          Length = 573

 Score =  128 bits (322), Expect = 4e-28
 Identities = 56/86 (65%), Positives = 71/86 (82%)
 Frame = +1

Query: 151 RGISQVPSNYVNADANMNRPMANDNLIRPAAENGATMLFVGELNWWTTDAEIERAVSYYG 330
           RG+ Q+  N +N +A++NRP+ N+N +RP  ENG T L+VGEL+WWTTDAE+E   S YG
Sbjct: 137 RGVPQMQVNQMNMNADVNRPVVNENQVRPPIENGPTTLYVGELHWWTTDAELESVASQYG 196

Query: 331 RVKEIKFFDERASGKSKGFCQVEFYD 408
           RVKEIKFFDERASGKSKG+CQV+FY+
Sbjct: 197 RVKEIKFFDERASGKSKGYCQVDFYE 222


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