BLASTX nr result
ID: Bupleurum21_contig00026883
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00026883
(437 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi... 219 2e-55
emb|CBI19766.3| unnamed protein product [Vitis vinifera] 219 2e-55
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,... 191 4e-47
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi... 186 1e-45
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi... 186 1e-45
>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 219 bits (557), Expect = 2e-55
Identities = 104/145 (71%), Positives = 127/145 (87%)
Frame = -3
Query: 435 QNEGEDEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNS 256
QN ED+AM+LFH ME DG+IKRDTA+WN+LI+G++QNGHK+KAL IFRQMQSFC+R NS
Sbjct: 469 QNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNS 528
Query: 255 VTILSILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDR 76
VT+LSILPACAN+++AKKVKEIH C+LR NLGSELSV N LIDTYAKSGNIVY++ IF
Sbjct: 529 VTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQG 588
Query: 75 IPTKDIISWNTMMAGSLLHSYSTAA 1
I +KDIISWN+++AG +LH S +A
Sbjct: 589 ISSKDIISWNSLIAGYVLHGCSDSA 613
Score = 101 bits (252), Expect = 5e-20
Identities = 53/130 (40%), Positives = 80/130 (61%)
Frame = -3
Query: 420 DEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNSVTILS 241
D+AM L ME+ I+ D TW ++ISG QN + +AL +FR+M + N VT+ S
Sbjct: 303 DDAMELMKKMESFRIVP-DVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTS 361
Query: 240 ILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDRIPTKD 61
+ ACA++ + KK E+HS ++ +L V NSLID Y+KSG + +R +FD I KD
Sbjct: 362 GISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKD 421
Query: 60 IISWNTMMAG 31
+ +WN+M+ G
Sbjct: 422 VYTWNSMIGG 431
Score = 60.1 bits (144), Expect = 2e-07
Identities = 36/129 (27%), Positives = 64/129 (49%)
Frame = -3
Query: 417 EAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNSVTILSI 238
EA +F M +R+ W+A+I + + + ++ F M + + + I
Sbjct: 137 EARKVFGEMR-----ERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKI 191
Query: 237 LPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDRIPTKDI 58
L AC N A+ K IHS V+R + + V NS++ YAK G + +R F+ + +D
Sbjct: 192 LQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDR 251
Query: 57 ISWNTMMAG 31
+SWN+++ G
Sbjct: 252 VSWNSIITG 260
>emb|CBI19766.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 219 bits (557), Expect = 2e-55
Identities = 104/145 (71%), Positives = 127/145 (87%)
Frame = -3
Query: 435 QNEGEDEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNS 256
QN ED+AM+LFH ME DG+IKRDTA+WN+LI+G++QNGHK+KAL IFRQMQSFC+R NS
Sbjct: 123 QNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNS 182
Query: 255 VTILSILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDR 76
VT+LSILPACAN+++AKKVKEIH C+LR NLGSELSV N LIDTYAKSGNIVY++ IF
Sbjct: 183 VTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQG 242
Query: 75 IPTKDIISWNTMMAGSLLHSYSTAA 1
I +KDIISWN+++AG +LH S +A
Sbjct: 243 ISSKDIISWNSLIAGYVLHGCSDSA 267
Score = 67.4 bits (163), Expect = 1e-09
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -3
Query: 261 NSVTILSILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIF 82
N VT+ S + ACA++ + KK E+HS ++ +L V NSLID Y+KSG + +R +F
Sbjct: 9 NGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVF 68
Query: 81 DRIPTKDIISWNTMMAG 31
D I KD+ +WN+M+ G
Sbjct: 69 DMILKKDVYTWNSMIGG 85
>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1218
Score = 191 bits (486), Expect = 4e-47
Identities = 96/144 (66%), Positives = 114/144 (79%)
Frame = -3
Query: 432 NEGEDEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNSV 253
N ED+AM+LF ME DG IKRDTA+WN+LISG++Q G KDKAL IFRQMQSF + +NSV
Sbjct: 459 NGDEDQAMDLFRRMEEDGKIKRDTASWNSLISGYLQIGQKDKALSIFRQMQSFSININSV 518
Query: 252 TILSILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDRI 73
TILS+LPACAN+I+ K VKEIH CV+R NL S L + NSLIDTYAKSGNI YSR IFDR
Sbjct: 519 TILSVLPACANLIALKMVKEIHGCVIRRNLDSLLPITNSLIDTYAKSGNIGYSRTIFDRA 578
Query: 72 PTKDIISWNTMMAGSLLHSYSTAA 1
KD I+WN+++AG +L S AA
Sbjct: 579 LFKDFITWNSLIAGYVLFGCSDAA 602
Score = 87.0 bits (214), Expect = 1e-15
Identities = 50/130 (38%), Positives = 71/130 (54%)
Frame = -3
Query: 420 DEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNSVTILS 241
D AM L ME G D TW ++ISG QN KAL +F M V N VTI S
Sbjct: 292 DIAMELMKKMEVLGT-SPDVVTWTSMISGLAQNDKASKALHLFNDMILARVEPNGVTISS 350
Query: 240 ILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDRIPTKD 61
+ ACA++ + EIH+ ++ ++ V NSLID Y+K G + + +FD +P KD
Sbjct: 351 AVSACASLKVLNEGLEIHALAVKLGFVEDVLVGNSLIDMYSKCGKLENAWKVFDMMPEKD 410
Query: 60 IISWNTMMAG 31
+ +WN+M+ G
Sbjct: 411 VYTWNSMIGG 420
>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 186 bits (473), Expect = 1e-45
Identities = 93/145 (64%), Positives = 117/145 (80%)
Frame = -3
Query: 435 QNEGEDEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNS 256
QN ED+AM+LF ME DG +KR+TA+WN+LI+G+ Q G K+KAL IFRQMQS NS
Sbjct: 464 QNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNS 523
Query: 255 VTILSILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDR 76
VTILSILPACANV++ KK+KEIH CVLR NL SEL+V NSL+DTYAKSGNI YSR +F+
Sbjct: 524 VTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNG 583
Query: 75 IPTKDIISWNTMMAGSLLHSYSTAA 1
+ +KDII+WN+++AG +LH S +A
Sbjct: 584 MSSKDIITWNSIIAGYILHGCSDSA 608
Score = 85.5 bits (210), Expect = 4e-15
Identities = 50/140 (35%), Positives = 76/140 (54%)
Frame = -3
Query: 420 DEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNSVTILS 241
D ++L ME+ G+ D TW ++ISG Q+ +AL F++M V N++TI S
Sbjct: 298 DLVIDLKKKMESVGLAP-DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIAS 356
Query: 240 ILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDRIPTKD 61
ACA++ S + EIH ++ + E V NSLID Y+K G + +R +FD I KD
Sbjct: 357 ATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKD 416
Query: 60 IISWNTMMAGSLLHSYSTAA 1
+ +WN+M+ G Y A
Sbjct: 417 VYTWNSMIGGYCQAGYGGKA 436
Score = 68.2 bits (165), Expect = 7e-10
Identities = 36/118 (30%), Positives = 61/118 (51%)
Frame = -3
Query: 384 DGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNSVTILSILPACANVISAK 205
DG+ +R+ TW+A+I + + + + +F M V ++ IL AC N +
Sbjct: 138 DGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLE 197
Query: 204 KVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDRIPTKDIISWNTMMAG 31
VK IHS V+R L + + NS++ + K G + +R F + +D +SWN M+AG
Sbjct: 198 TVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAG 255
>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Cucumis sativus]
Length = 1463
Score = 186 bits (473), Expect = 1e-45
Identities = 93/145 (64%), Positives = 117/145 (80%)
Frame = -3
Query: 435 QNEGEDEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNS 256
QN ED+AM+LF ME DG +KR+TA+WN+LI+G+ Q G K+KAL IFRQMQS NS
Sbjct: 464 QNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNS 523
Query: 255 VTILSILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDR 76
VTILSILPACANV++ KK+KEIH CVLR NL SEL+V NSL+DTYAKSGNI YSR +F+
Sbjct: 524 VTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNG 583
Query: 75 IPTKDIISWNTMMAGSLLHSYSTAA 1
+ +KDII+WN+++AG +LH S +A
Sbjct: 584 MSSKDIITWNSIIAGYILHGCSDSA 608
Score = 85.5 bits (210), Expect = 4e-15
Identities = 50/140 (35%), Positives = 76/140 (54%)
Frame = -3
Query: 420 DEAMNLFHNMENDGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNSVTILS 241
D ++L ME+ G+ D TW ++ISG Q+ +AL F++M V N++TI S
Sbjct: 298 DLVIDLKKKMESVGLAP-DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIAS 356
Query: 240 ILPACANVISAKKVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDRIPTKD 61
ACA++ S + EIH ++ + E V NSLID Y+K G + +R +FD I KD
Sbjct: 357 ATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKD 416
Query: 60 IISWNTMMAGSLLHSYSTAA 1
+ +WN+M+ G Y A
Sbjct: 417 VYTWNSMIGGYCQAGYGGKA 436
Score = 68.2 bits (165), Expect = 7e-10
Identities = 36/118 (30%), Positives = 61/118 (51%)
Frame = -3
Query: 384 DGIIKRDTATWNALISGHVQNGHKDKALRIFRQMQSFCVRLNSVTILSILPACANVISAK 205
DG+ +R+ TW+A+I + + + + +F M V ++ IL AC N +
Sbjct: 138 DGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLE 197
Query: 204 KVKEIHSCVLRGNLGSELSVLNSLIDTYAKSGNIVYSRAIFDRIPTKDIISWNTMMAG 31
VK IHS V+R L + + NS++ + K G + +R F + +D +SWN M+AG
Sbjct: 198 TVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAG 255