BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026836
         (880 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...   314   2e-83
ref|XP_002318955.1| predicted protein [Populus trichocarpa] gi|2...   310   2e-82
ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [...   309   5e-82
ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   308   1e-81
ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [...   305   9e-81

>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 321

 Score =  314 bits (804), Expect = 2e-83
 Identities = 162/281 (57%), Positives = 193/281 (68%), Gaps = 13/281 (4%)
 Frame = -1

Query: 805 ENDLKSINNFXXXXXXXXXLISKNIELSRAMXXXXXXXXXXXXXTHVLFEDDWLIAVNKP 626
           +ND  ++ N+          ISK IEL+RA+             + VL+ED WLIAVNKP
Sbjct: 13  QNDPLTLQNYPTPLSPPLPSISKQIELARALSASSRSSLFTLSRSDVLYEDQWLIAVNKP 72

Query: 625 QGLYCETVLSS----LQLDTKLKQP---------EFHLANRLDRDTSGVMLITKSHKVAA 485
           QG+YCETVL S    L    +L  P         EFHLANRLDRDTSGVM+ITKSHKVA+
Sbjct: 73  QGVYCETVLESVPRVLAASAELTDPSEGAEGNPHEFHLANRLDRDTSGVMVITKSHKVAS 132

Query: 484 KLVKAFTDHKVRKTYIASCIGAAPNWRRINIESGHGRSKFGAWRVYAASDVGKKLPGGSV 305
           KLVKAFTDHK++KTYIA CIG AP W +I I+SGHGRSKFG WRVYAASDVG+ LPGGS 
Sbjct: 133 KLVKAFTDHKIKKTYIALCIGLAPKWEKITIKSGHGRSKFGVWRVYAASDVGQTLPGGST 192

Query: 304 IRDMATSFEVLSINAQCCTKDSSXXXXXXXXXXXXXXXVIDCGERKDEIVVRAYPRSGRT 125
           ++DM TSFE+LS+N Q   K+ S                 +   +K EI+VRA+P+SGRT
Sbjct: 193 VKDMETSFELLSVNGQGSFKELSEFEKDENILVVEEKAAKNADVKKVEILVRAFPQSGRT 252

Query: 124 HQIRLHCQYLGISIRGDVKYEGISEWKGKVYDYHALHAESL 2
           HQIRLHCQYLGISIRGDVKYEG+ EW+G+ YD H LHAE+L
Sbjct: 253 HQIRLHCQYLGISIRGDVKYEGVYEWEGRTYDGHELHAETL 293


>ref|XP_002318955.1| predicted protein [Populus trichocarpa] gi|222857331|gb|EEE94878.1|
           predicted protein [Populus trichocarpa]
          Length = 261

 Score =  310 bits (795), Expect = 2e-82
 Identities = 154/222 (69%), Positives = 175/222 (78%)
 Frame = -1

Query: 667 VLFEDDWLIAVNKPQGLYCETVLSSLQLDTKLKQPEFHLANRLDRDTSGVMLITKSHKVA 488
           VL++D WLIAVNKPQG+YCETVL S+        P+ HLANRLDRDTSGVM+ITK HKVA
Sbjct: 17  VLYQDQWLIAVNKPQGVYCETVLDSV--------PQLHLANRLDRDTSGVMVITKLHKVA 68

Query: 487 AKLVKAFTDHKVRKTYIASCIGAAPNWRRINIESGHGRSKFGAWRVYAASDVGKKLPGGS 308
           +KLVKAFTDHKVRKTYIA CIG+AP W +I I+SGHGRSKFGA+RVYAASDVG+ LPGGS
Sbjct: 69  SKLVKAFTDHKVRKTYIALCIGSAPKWEKITIKSGHGRSKFGAFRVYAASDVGRSLPGGS 128

Query: 307 VIRDMATSFEVLSINAQCCTKDSSXXXXXXXXXXXXXXXVIDCGERKDEIVVRAYPRSGR 128
            ++DM TSFEVLSIN Q   ++ S               VID   +KDEI+VRA+PRSGR
Sbjct: 129 TVKDMETSFEVLSINGQGSFREPSEFNSDKNILVVEEKAVIDTDAKKDEILVRAFPRSGR 188

Query: 127 THQIRLHCQYLGISIRGDVKYEGISEWKGKVYDYHALHAESL 2
           THQIRLHCQYLGI IRGDVKYEG+ EWKG+ YD H LHAESL
Sbjct: 189 THQIRLHCQYLGIPIRGDVKYEGVCEWKGRTYDGHELHAESL 230


>ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [Cucumis sativus]
          Length = 366

 Score =  309 bits (792), Expect = 5e-82
 Identities = 160/297 (53%), Positives = 196/297 (65%), Gaps = 9/297 (3%)
 Frame = -1

Query: 865 FLRFASMADETHLNSRRTQLENDLKSINNFXXXXXXXXXLISKNIELSRAMXXXXXXXXX 686
           F RF S+++    +S      N   +  N+          ISKN+EL+RAM         
Sbjct: 29  FHRFKSVSNSM-TDSSEPVTGNCPSTAENYPVPLSPPLPAISKNLELARAMVASSKSSLY 87

Query: 685 XXXXTHVLFEDDWLIAVNKPQGLYCETVLS--------SLQLDTKLKQPEFHLANRLDRD 530
                 V++ED+WLIAVNKPQG+YCE VL+        S     K   PE HLANRLDRD
Sbjct: 88  ALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLLGDSANAGIKTSLPELHLANRLDRD 147

Query: 529 TSGVMLITKSHKVAAKLVKAFTDHKVRKTYIASCIGAAPNWRRINIESGHGRSKFGAWRV 350
           TSGVM+ITKSHKVA+KLVKAFTDH V K+YIA C+G +P W++IN++SGHGRSKFG WRV
Sbjct: 148 TSGVMVITKSHKVASKLVKAFTDHTVSKSYIAFCVGTSPKWKKINVKSGHGRSKFGVWRV 207

Query: 349 YAASDVGKKLPGGSVIRDMATSFEVLSINAQCCTKD-SSXXXXXXXXXXXXXXXVIDCGE 173
           YAA+DVG+ LPGGSV+RDM T FEVLS+N +   ++                  ++D   
Sbjct: 208 YAAADVGRSLPGGSVVRDMETYFEVLSVNGKNTMEELQKFRRGEEETIVVHTKSLVDIDS 267

Query: 172 RKDEIVVRAYPRSGRTHQIRLHCQYLGISIRGDVKYEGISEWKGKVYDYHALHAESL 2
            KDEI++RA PRSGRTHQIRLHCQYLGI IRGDVKYEG++EW  K+YD H LHAESL
Sbjct: 268 HKDEILIRARPRSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNEKIYDSHELHAESL 324


>ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 1-like
           [Cucumis sativus]
          Length = 366

 Score =  308 bits (789), Expect = 1e-81
 Identities = 160/297 (53%), Positives = 195/297 (65%), Gaps = 9/297 (3%)
 Frame = -1

Query: 865 FLRFASMADETHLNSRRTQLENDLKSINNFXXXXXXXXXLISKNIELSRAMXXXXXXXXX 686
           F RF S+++    +S      N   +  N+          ISKN+EL+RAM         
Sbjct: 29  FHRFKSVSNSM-TDSSEPVTGNCPSTAENYPVPLSPPLPAISKNLELARAMVASSKSSLY 87

Query: 685 XXXXTHVLFEDDWLIAVNKPQGLYCETVLS--------SLQLDTKLKQPEFHLANRLDRD 530
                 V++ED+WLIAVNKPQG+YCE VL+        S     K   PE HLANRLDRD
Sbjct: 88  ALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLLGDSANAGIKTSLPELHLANRLDRD 147

Query: 529 TSGVMLITKSHKVAAKLVKAFTDHKVRKTYIASCIGAAPNWRRINIESGHGRSKFGAWRV 350
           TSGVM+ITKSHKVA+KLVKAFTDH V K+YIA C+G +P W +IN++SGHGRSKFG WRV
Sbjct: 148 TSGVMVITKSHKVASKLVKAFTDHTVSKSYIAFCVGTSPKWXKINVKSGHGRSKFGVWRV 207

Query: 349 YAASDVGKKLPGGSVIRDMATSFEVLSINAQCCTKD-SSXXXXXXXXXXXXXXXVIDCGE 173
           YAA+DVG+ LPGGSV+RDM T FEVLS+N +   ++                  ++D   
Sbjct: 208 YAAADVGRSLPGGSVVRDMETYFEVLSVNGKNTMEELQKFRRGEEETIVVHTKSLVDIDS 267

Query: 172 RKDEIVVRAYPRSGRTHQIRLHCQYLGISIRGDVKYEGISEWKGKVYDYHALHAESL 2
            KDEI++RA PRSGRTHQIRLHCQYLGI IRGDVKYEG++EW  K+YD H LHAESL
Sbjct: 268 HKDEILIRARPRSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNEKIYDSHELHAESL 324


>ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [Vitis vinifera]
          Length = 348

 Score =  305 bits (781), Expect = 9e-81
 Identities = 160/268 (59%), Positives = 185/268 (69%), Gaps = 6/268 (2%)
 Frame = -1

Query: 787 INNFXXXXXXXXXLISKNIELSRAMXXXXXXXXXXXXXTHVLFEDDWLIAVNKPQGLYCE 608
           + N+          ISK+IE SRAM             + +LFED WL+AVNKPQG+YCE
Sbjct: 51  LTNYPKPISPPLPAISKHIEQSRAMSASSRSSLFSLCRSDILFEDQWLMAVNKPQGVYCE 110

Query: 607 TVLSSLQL-----DTKLKQPEFHLANRLDRDTSGVMLITKSHKVAAKLVKAFTDHKVRKT 443
           T+L S+       D        HLANRLDRDTSGVM+ITKSH+VAAKL+KAF+D KV KT
Sbjct: 111 TILLSVSRMLDDSDGHDSCRSLHLANRLDRDTSGVMVITKSHQVAAKLMKAFSDRKVTKT 170

Query: 442 YIASCIGAAPNWRRINIESGHGRSKFGAWRVYAASDVGKKLPGGSVIRDMATSFEVLSIN 263
           Y+A CIGAAP W +I I+SGHGRSKFGAWRVYAASDVG+ LP    I+DM TSFEVLS+N
Sbjct: 171 YLALCIGAAPTWEKITIKSGHGRSKFGAWRVYAASDVGRALPNAPAIKDMVTSFEVLSVN 230

Query: 262 AQCCTKD-SSXXXXXXXXXXXXXXXVIDCGERKDEIVVRAYPRSGRTHQIRLHCQYLGIS 86
            Q   K+                  VID   R+DEI+VRA+PRSGRTHQIRLHCQYLGIS
Sbjct: 231 GQGNVKELPESRKADETVLVVEERSVIDSNARQDEILVRAFPRSGRTHQIRLHCQYLGIS 290

Query: 85  IRGDVKYEGISEWKGKVYDYHALHAESL 2
           IRGDVKYEG+ EWKGK+YD H LHAESL
Sbjct: 291 IRGDVKYEGVHEWKGKIYDGHELHAESL 318