BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026745
         (863 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28710.1| Polynucleotidyl transferase, Ribonuclease H fold ...   107   6e-25
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   114   2e-23
ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatu...    85   2e-20
ref|XP_003605496.1| hypothetical protein MTR_4g032310 [Medicago ...    94   3e-17
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici...    91   1e-16

>gb|ABD28710.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 393

 Score =  107 bits (266), Expect(2) = 6e-25
 Identities = 70/219 (31%), Positives = 100/219 (45%), Gaps = 20/219 (9%)
 Frame = -3

Query: 855 CPMCNSDIEHMAHVFFDCQFASQCWNYAGLNY----DMQAISYVPGW---LIQKISEGKM 697
           C  C    E   H+FF C+ A   WN A + +     +      P     L+QK+S  +M
Sbjct: 97  CVKCEDPHEDCYHIFFHCRTAIDVWNTANVWHLIAPSLSQFDNAPDIIFNLLQKLSASQM 156

Query: 696 EEIIKIATVLWAIWFWRNKKVWEEKSVSPRLAVDWSTKIIQDWRKANENKKK--QVIATN 523
           E I+   T++W+IW  RN K+W++ S S    ++ +  +++ WRKAN  +    QV +  
Sbjct: 157 ESIV---TIMWSIWKSRNLKLWQQVSESSVTILERAKHLLEGWRKANHKQGLLGQVHSPT 213

Query: 522 NVEPIEEK-----------RWQPPEVGRFKVNVDASVIEGGDSFSIGMVLRDHTGKFVEG 376
           N  P               RW+ P+ GR K NVDAS     +   IGM +RD  G  V  
Sbjct: 214 NSRPQTHDSQNTDNRYGNIRWRKPKSGRLKCNVDASFSTSSNKVGIGMCIRDSEGNHVRS 273

Query: 375 KNMSFCNPESMFTAEVIGLSEALSWIAAKDLQDVIFETD 259
           K M F     +   E +GL  A  WI    L +V FE D
Sbjct: 274 KTMWFSPLCPVNIGEALGLYHATRWINELQLTNVDFEVD 312



 Score = 33.9 bits (76), Expect(2) = 6e-25
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -1

Query: 203 HVLHSCLIWLEDEPSFKVVFVKRHVNKVAHELAKLHCLVNCYNLFMSPPLLLETLMYDSL 24
           + +  C I+L +     V F +R  N+VAHELAK   L   +++F   P  +  L+++ +
Sbjct: 336 NTIQFCNIFLTNS---HVEFTRRQANEVAHELAKAATLGPSFHIFDESPTCISDLIFNEM 392


>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  114 bits (286), Expect = 2e-23
 Identities = 69/227 (30%), Positives = 103/227 (45%)
 Frame = -3

Query: 855  CPMCNSDIEHMAHVFFDCQFASQCWNYAGLNYDMQAISYVPGWLIQKISEGKMEEIIKIA 676
            CP+C S++E   H   +C  A   W+ +GL            WL    +        K  
Sbjct: 549  CPICRSELETTLHALVECVAARDVWDESGLAMLQGNFGSFVDWLATMFAYCDFVVFAKYL 608

Query: 675  TVLWAIWFWRNKKVWEEKSVSPRLAVDWSTKIIQDWRKANENKKKQVIATNNVEPIEEKR 496
             V W +W+ RN  VW  +    +  V+    +++ W  ANE      +AT    P    +
Sbjct: 609  AVCWGLWWRRNDVVWNGRIWHSQQVVNGCFTMLESWFHANET-----LATAVTVPSYSSK 663

Query: 495  WQPPEVGRFKVNVDASVIEGGDSFSIGMVLRDHTGKFVEGKNMSFCNPESMFTAEVIGLS 316
            WQ P+ G  K+NVD +V    D  +IG V RDH G+F+ G    F +       E +G+ 
Sbjct: 664  WQKPDYGWIKINVDGAVFP--DKGAIGAVFRDHQGRFMGGFAKPFPHQTLPKVVEALGVR 721

Query: 315  EALSWIAAKDLQDVIFETDLLLTVKALQHGRKSIRSWPCSSLLFNLV 175
            E LSWI  +    ++ ETD L  V+A+QH     +S P +S  F +V
Sbjct: 722  EVLSWIHERSRSRIVVETDCLRVVQAIQH-----KSCPNTSFGFIIV 763


>ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatula]
           gi|355487250|gb|AES68453.1| 60S ribosomal protein L23
           [Medicago truncatula]
          Length = 547

 Score = 85.1 bits (209), Expect(2) = 2e-20
 Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 2/148 (1%)
 Frame = -3

Query: 672 VLWAIWFWRNKKVWEEKSVSPRLAVDWSTKIIQDWRKANENKKKQVIATNNVEPIEEKRW 493
           +LW IW  RN KVW+ +     +AV  + +++  W+ A  +   QV       P +   W
Sbjct: 2   MLWCIWRRRNDKVWDGQLQPSNIAVQLARELLFQWQAARNSATTQV----QQSPQDTIAW 57

Query: 492 QPPEVGRFKVNVDASVIEGGDSFSIGMVLRDHTGKFVEGKNMSF--CNPESMFTAEVIGL 319
           QPP  G  K NVDA++    + F  GM +RD  G+F++     +  C P     AE +GL
Sbjct: 58  QPPAAGFLKCNVDAAIFSEQNRFGTGMCVRDQRGRFLKAATNWYEGCPPPQ--EAEAVGL 115

Query: 318 SEALSWIAAKDLQDVIFETDLLLTVKAL 235
            +A+ W+   +L +V  E D  L V ++
Sbjct: 116 RDAILWLGQLELSNVQLELDCKLVVDSI 143



 Score = 40.4 bits (93), Expect(2) = 2e-20
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 221 NQLEVGHVLHSCLIWLEDEPSFKVVFVKRHVNKVAHELAKLHCLVNCYNL-FMSPPLLLE 45
           NQ E G ++  C   L+   +FK+ FV+R  N VAH  A++      + L F  P  +LE
Sbjct: 149 NQAEFGSIIDDCRSLLQQFTNFKISFVRRQANVVAHSFARVSIFQPLFGLAFAKPESILE 208


>ref|XP_003605496.1| hypothetical protein MTR_4g032310 [Medicago truncatula]
           gi|355506551|gb|AES87693.1| hypothetical protein
           MTR_4g032310 [Medicago truncatula]
          Length = 283

 Score = 94.4 bits (233), Expect = 3e-17
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 10/222 (4%)
 Frame = -3

Query: 849 MCNSDIEHMAHVFFDCQFASQCWNYAGLNYDMQAISYVPGW-------LIQKISEGKMEE 691
           MC    E  +HV FDC  A + W  + L   + ++ +           L+Q++S  + E 
Sbjct: 1   MCEESYEDASHVLFDCPRARKVWQDSLLLSKVNSVMWCNNTAAEFIFALLQELSHDQAE- 59

Query: 690 IIKIATVLWAIWFWRNKKVWEEKSVSPRLAVDWSTKIIQDWRKANENKKKQ--VIATNNV 517
               A+VLW++W  RN ++W+    + +  ++ + +I+ +WR AN N   Q    AT+  
Sbjct: 60  --LFASVLWSLWKSRNLRLWQNVRETSQAILECAKQILANWRTANRNTAVQQTETATSRA 117

Query: 516 EPIEEKRWQPPEVGRFKVNVDASVIEGGDSFSIGMVLRDHTGKFVEGKNMSFCNPE-SMF 340
           + + +  WQ P   R K NVD S  E  +    G  +R+  G  ++ K M + NP  +  
Sbjct: 118 QAV-QSFWQKPAHCRLKCNVDVSFSEALNCVGFGFCIRNEFGNLIKAKTM-WSNPVFASD 175

Query: 339 TAEVIGLSEALSWIAAKDLQDVIFETDLLLTVKALQHGRKSI 214
             E +GLS A+ W+    L ++ FE D    V    +G   I
Sbjct: 176 VGEALGLSNAIRWVHELQLLNINFELDAKKVVDYFNNGSNDI 217


>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223538337|gb|EEF39944.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 483

 Score = 90.9 bits (224), Expect(2) = 1e-16
 Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 6/215 (2%)
 Frame = -3

Query: 858 TCPMCNSDIEHMAHVFFDCQFASQCWNYAGLNYDMQAISYVPGWL--IQKISEGKMEEII 685
           +CP C S  E + H+   C   +Q W Y  L    Q +S V   L   + + E   + I+
Sbjct: 224 SCPCCVSQPETIMHILVLCDVTTQSWKYVNL---YQFLSQVSNLLEGARSVFEHFDDSIV 280

Query: 684 KIATVLW-AIWFWRNKKVWEEKSVSPRLAVDWSTKIIQDWRKANENKKKQVIATNNVEPI 508
               VLW ++W   N  VW  K +S R     ++  +  W KA +      +  +     
Sbjct: 281 ASFVVLWWSLWTNMNDVVWNGKKLSWRAVASRASSFLFQWGKARKLTDYHQLGRHFAGG- 339

Query: 507 EEKRWQPPEVGRFKVNVDASVIEGGDSFSIGMVLRDHTGKFVEGK---NMSFCNPESMFT 337
            +  WQ P  G++K+NVDAS            VLRD+ G ++ G         NP+    
Sbjct: 340 -DCLWQKPATGKYKLNVDASSSAERGKSGASFVLRDNAGIWITGVLIIRPYIANPD---V 395

Query: 336 AEVIGLSEALSWIAAKDLQDVIFETDLLLTVKALQ 232
           AE   L EALSWI AK +++V  ETD L  ++ L+
Sbjct: 396 AEAWALKEALSWIHAKGMEEVQIETDCLRNIELLE 430



 Score = 21.9 bits (45), Expect(2) = 1e-16
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 152 VVFVKRHVNKVAHELAKLHCLVNCYN 75
           +VFV    N VAH ++K  C  + ++
Sbjct: 458 LVFVYGSANTVAHMISKATCSAHMFD 483