BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026737
         (1421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   473   e-131
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...   470   e-130
ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-lik...   466   e-129
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-lik...   464   e-128
gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]      456   e-126

>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
            gi|297739525|emb|CBI29707.3| unnamed protein product
            [Vitis vinifera]
          Length = 380

 Score =  473 bits (1218), Expect = e-131
 Identities = 240/355 (67%), Positives = 282/355 (79%), Gaps = 4/355 (1%)
 Frame = +1

Query: 76   RPAKIAKL--INDGEEGIEAIDTDRTMNQKPTIQRYLLAVEYIGTRFSGAQQQPTGRTVV 249
            RP+KIA+   ++DGE+        +TM Q P +QRYL+AVEYIGTRFSG+QQQ   RTV 
Sbjct: 31   RPSKIARTDDLSDGEQQDSV--ASKTMTQNPRVQRYLVAVEYIGTRFSGSQQQLNCRTVA 88

Query: 250  GVLEEAFHRFVGKSVKVTCSSRTDAGVHALSNVFHTDVERISKRKPGEVLPPHEPGVVQR 429
            G L+EAFH+F+G+ V + CSSRTDAGVHALSNV H DVERISKRKPGEVLPPHEP VV+R
Sbjct: 89   GALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVVRR 148

Query: 430  AVNHFLQKNEGDISVLDVRCVPSDFHARYRAHERTYFYRLLSGPQFVSTFEKDRAWHVPE 609
            AVNHFLQKNEGD+ V+DVRCVP DFHARY+A ERTYFYRLLSGP+ +S+FEKDRAWHVPE
Sbjct: 149  AVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERTYFYRLLSGPEPLSSFEKDRAWHVPE 208

Query: 610  VLDLSAMQEACKILVGHHDFSSFRAASCQAKSPIRTLDELSVTEVVSAPCFPSVMEREQQ 789
             LDL AMQ+AC++LVG HDFSSFRAA CQAKSPIRTLDEL V+EV+  P FPS+ ER Q 
Sbjct: 209  DLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIRTLDELCVSEVLPTPYFPSITERAQN 268

Query: 790  SLVD--PFECSESKAKTSIACLSSAPEQNSVEGSNSESSQVFGMRRKHRCFVVTARSRSF 963
            +  +  P  CS +     +    S    + ++G N  + Q FG+RR+HRCF+VTAR+RSF
Sbjct: 269  NFTEENPLACSNN---AEVPDSPSTANHDRLDGFNG-AGQGFGVRRRHRCFLVTARARSF 324

Query: 964  LYHQVRLLVGTLKSVGTGDLTVPDVERILKAKSVTAASAMAPACGLYLAHVKYDL 1128
            LYHQVRLLVG +K VGTGDLTV DVERIL AK+VTAAS MAPACGLYL +V YDL
Sbjct: 325  LYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAASPMAPACGLYLGNVNYDL 379


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 372

 Score =  470 bits (1209), Expect = e-130
 Identities = 245/358 (68%), Positives = 280/358 (78%), Gaps = 7/358 (1%)
 Frame = +1

Query: 76   RPAKIAK---LINDGEEGIEAIDTD----RTMNQKPTIQRYLLAVEYIGTRFSGAQQQPT 234
            RP+KI K    ++D EEG E +        +M+  P +QRYL+AVEYIGT+F+G+Q+Q  
Sbjct: 16   RPSKILKTQDFVDDNEEGEEELQESSFVAESMSSNPKLQRYLIAVEYIGTKFAGSQKQLN 75

Query: 235  GRTVVGVLEEAFHRFVGKSVKVTCSSRTDAGVHALSNVFHTDVERISKRKPGEVLPPHEP 414
            GRTVVGVLEEAF +F+G+ V V+ SSRTDAGVHALSNV H D+ERISKRKPGEVLPPHEP
Sbjct: 76   GRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNVCHVDIERISKRKPGEVLPPHEP 135

Query: 415  GVVQRAVNHFLQKNEGDISVLDVRCVPSDFHARYRAHERTYFYRLLSGPQFVSTFEKDRA 594
             VV+RAVNHFLQKNEGDI V DVRCVPSDFHAR++A ERTYFYR LSGP+ +STFEKDRA
Sbjct: 136  AVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQERTYFYRFLSGPEPLSTFEKDRA 195

Query: 595  WHVPEVLDLSAMQEACKILVGHHDFSSFRAASCQAKSPIRTLDELSVTEVVSAPCFPSVM 774
            WHV E LD+ AMQEACK+LVGHHDFSSFRA+ CQAKSPIRTL E+SV+EV S   FPS+ 
Sbjct: 196  WHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSPIRTLAEISVSEVASTLYFPSIT 255

Query: 775  EREQQSLVDPFECSESKAKTSIACLSSAPEQNSVEGSNSESSQVFGMRRKHRCFVVTARS 954
            EREQ        C + K KT +  + S    N  E S  E+   FG+RR+HRCFVVTAR+
Sbjct: 256  EREQNCENGENSCCK-KFKTDLP-MGSHSNTNVAESSFGETDLGFGIRRRHRCFVVTARA 313

Query: 955  RSFLYHQVRLLVGTLKSVGTGDLTVPDVERILKAKSVTAASAMAPACGLYLAHVKYDL 1128
            RSFLYHQVRLLVG LKSVG GDLT  DVERIL AKSVTAAS MAPA GLYL HVKYDL
Sbjct: 314  RSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAASPMAPARGLYLGHVKYDL 371


>ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 352

 Score =  466 bits (1199), Expect = e-129
 Identities = 237/352 (67%), Positives = 278/352 (78%), Gaps = 1/352 (0%)
 Frame = +1

Query: 76   RPAKIAKLINDGEEGIEAIDTDRTMNQKPTIQRYLLAVEYIGTRFSGAQQQPTGRTVVGV 255
            RP KI K  ++   G E  +   TMN KP IQRYL+AVEYIGTRF G+QQQP  RTVVG 
Sbjct: 19   RPLKIGKTTDELFHGDE--EEAETMNPKPGIQRYLVAVEYIGTRFYGSQQQPNCRTVVGA 76

Query: 256  LEEAFHRFVGKSVKVTCSSRTDAGVHALSNVFHTDVERISKRKPGEVLPPHEPGVVQRAV 435
            LEEAF +F+G+ V V CSSRTDAGVHALSNV H DVERISKRKPGEVLPPHEPGVV +AV
Sbjct: 77   LEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVHKAV 136

Query: 436  NHFLQKNEGDISVLDVRCVPSDFHARYRAHERTYFYRLLSGPQFVSTFEKDRAWHVPEVL 615
            NHFLQK+EGD++V+DVR VP+DFHARY+A ERTYFYRL+SGP+ +S+FEKDRAWHVPE L
Sbjct: 137  NHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSSFEKDRAWHVPETL 196

Query: 616  DLSAMQEACKILVGHHDFSSFRAASCQAKSPIRTLDELSVTEVVSAPCFPSVMEREQQSL 795
            ++ AMQEACK+LVGHHDFSSFRAA CQA SPIRTLDEL+V EV S P FP+ MER+Q+  
Sbjct: 197  NIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTPYFPTSMERKQR-- 254

Query: 796  VDPFECSESKAKTSIACLSSAPEQNSVEGSNSESSQV-FGMRRKHRCFVVTARSRSFLYH 972
                                  E++ +E   SE+ +V FG+RR+HRCFVVTAR+RSFLYH
Sbjct: 255  -------------------QGKEESEIEVPCSETCEVGFGIRRRHRCFVVTARARSFLYH 295

Query: 973  QVRLLVGTLKSVGTGDLTVPDVERILKAKSVTAASAMAPACGLYLAHVKYDL 1128
            QVRL+VG LK+VG+GDLTV DV RIL+AK+V++A  MAPACGLYL HVKYDL
Sbjct: 296  QVRLMVGVLKAVGSGDLTVGDVGRILEAKNVSSARPMAPACGLYLGHVKYDL 347


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
          Length = 369

 Score =  464 bits (1193), Expect = e-128
 Identities = 238/369 (64%), Positives = 289/369 (78%), Gaps = 2/369 (0%)
 Frame = +1

Query: 28   SKNLRNXXXXXXXXXXRPAKIAKLINDGEEGIEAIDTDRTMNQKPTIQRYLLAVEYIGTR 207
            ++NL++          RP+KI+K+    +  I+  +   + N +  IQRYL+A+EYIGT 
Sbjct: 2    TQNLKHTVDLECSDNSRPSKISKIEYPSDSDIDEEEEGMSQNPRNGIQRYLVAIEYIGTL 61

Query: 208  FSGAQQQPTGRTVVGVLEEAFHRFVGKSVKVTCSSRTDAGVHALSNVFHTDVERISKRKP 387
            FSG+Q+Q   RTVVG LEEAF +FVG+ V V+CSSRTDAGVHALSNV H D++RISKR+P
Sbjct: 62   FSGSQKQLNVRTVVGALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRP 121

Query: 388  GEVLPPHEPGVVQRAVNHFLQKNEGDISVLDVRCVPSDFHARYRAHERTYFYRLLSGPQF 567
            GEVLPPHEP VV RAVNHFLQK++ D+ V+DVRCVPSDFHAR++A ERTYFYRLLSGP+ 
Sbjct: 122  GEVLPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEP 181

Query: 568  VSTFEKDRAWHVPEVLDLSAMQEACKILVGHHDFSSFRAASCQAKSPIRTLDELSVTEVV 747
            +STFEKDRAWHVPE L L AMQEAC++LVG HDFSSFRAA CQAKSPIRTLDELSV EV+
Sbjct: 182  LSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVNEVI 241

Query: 748  SAPCFPSVMEREQQSLV--DPFECSESKAKTSIACLSSAPEQNSVEGSNSESSQVFGMRR 921
             +P FPS+M+REQ + V  D   CS +  +T I  +S+ P  + V  S+ ++   FG RR
Sbjct: 242  ESPYFPSLMDREQHNKVSGDLRSCS-NNTETDIPPISN-PSIDKVITSSQDAG--FGKRR 297

Query: 922  KHRCFVVTARSRSFLYHQVRLLVGTLKSVGTGDLTVPDVERILKAKSVTAASAMAPACGL 1101
            +HRC VVTAR+RSFLYHQVRLLVG LK+ GTG+LT+PDVERIL AK+VTAAS MAPACGL
Sbjct: 298  RHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPACGL 357

Query: 1102 YLAHVKYDL 1128
            YL  VKYDL
Sbjct: 358  YLGEVKYDL 366


>gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]
          Length = 361

 Score =  456 bits (1172), Expect = e-126
 Identities = 239/355 (67%), Positives = 273/355 (76%), Gaps = 4/355 (1%)
 Frame = +1

Query: 76   RPAKIAKLINDGEEGIEAIDTDRTMNQKP---TIQRYLLAVEYIGTRFSGAQQQPTGRTV 246
            RP+KI+K+             +  MNQ      IQRYL+AVEYIGTRF G Q+Q T RTV
Sbjct: 21   RPSKISKI-------------EEEMNQHHHHRKIQRYLVAVEYIGTRFFGFQKQLTDRTV 67

Query: 247  VGVLEEAFHRFVGKSVKVTCSSRTDAGVHALSNVFHTDVERISKRKPGEVLPPHEPGVVQ 426
             GVLE+AF +FVG+ V V CSSRTDAGVHALSNV H D+ERISKRKPGEVL PHEP VV+
Sbjct: 68   AGVLEDAFCKFVGQPVSVVCSSRTDAGVHALSNVCHVDIERISKRKPGEVLQPHEPAVVR 127

Query: 427  RAVNHFLQKNEGDISVLDVRCVPSDFHARYRAHERTYFYRLLSGPQFVSTFEKDRAWHVP 606
            RAVNHFLQK  GD++V+DVRCVPSDFHARY+A ERTYFYRLLSGP+ +STFEKDRAWH+P
Sbjct: 128  RAVNHFLQKENGDLAVIDVRCVPSDFHARYKAQERTYFYRLLSGPETLSTFEKDRAWHIP 187

Query: 607  EVLDLSAMQEACKILVGHHDFSSFRAASCQAKSPIRTLDELSVTEVVSAPCFPSVMEREQ 786
            E L+L AMQEACK+LVGHHDFSSFRA+ CQAKSPIR+LDELSV EV  +P FPSVM+RE 
Sbjct: 188  EELNLPAMQEACKVLVGHHDFSSFRASGCQAKSPIRSLDELSVVEVTRSPYFPSVMDREN 247

Query: 787  Q-SLVDPFECSESKAKTSIACLSSAPEQNSVEGSNSESSQVFGMRRKHRCFVVTARSRSF 963
              ++ D   C  S ++T I   SSA      E S S+    FG RR HRC VVTAR+R+F
Sbjct: 248  PINVTDDLHCFHSNSETVIPLGSSA---RIDEVSASKEDVGFGKRRYHRCLVVTARARAF 304

Query: 964  LYHQVRLLVGTLKSVGTGDLTVPDVERILKAKSVTAASAMAPACGLYLAHVKYDL 1128
            LYHQVRLLVG LK VGTG++TV DVERIL AK+VTA S MAPACGLYL  VKYDL
Sbjct: 305  LYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTATSPMAPACGLYLGEVKYDL 359