BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026725
         (777 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   139   2e-43
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g...   134   6e-42
gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japo...   134   6e-42
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...   139   3e-41
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   137   9e-41

>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
           At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  139 bits (349), Expect(3) = 2e-43
 Identities = 61/117 (52%), Positives = 81/117 (69%)
 Frame = +3

Query: 99  KGIHWMSWDRMCTSKMYGGLGFRHLHEFNLALLGKQGWRLIINPDSLVAKIFKARYYPQD 278
           + I WMSW +MC  K  GGLGFR L +FNLALL KQGWR + NPDSLV +IF+ARY+   
Sbjct: 302 RSIRWMSWGKMCKQKKDGGLGFRKLXDFNLALLAKQGWRFLRNPDSLVTRIFQARYFRNS 361

Query: 279 NFLTAKLGGSPSFVWRSVLEAQSLIKQGIACRVGNGKSISIANDPWLPDDVNPYVQT 449
           +FL A+LG +PS++WRS+L AQ L+K+G    + +G  + +  D WLPD  N  + T
Sbjct: 362 SFLNAELGSNPSYMWRSILAAQGLLKRGCYWSIASGTKVQVWGDSWLPDSSNRLIIT 418



 Score = 63.2 bits (152), Expect(3) = 2e-43
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
 Frame = +2

Query: 524 VRDVFDDRDANIILAIPL-RTEEEDRWYWRKEKLGNYSVKSAYNIIQ---QSKSHNNSIV 691
           +RD F  RDA++IL+IPL  +  ED+  W  +  G Y+ +S Y  ++   QS +   S V
Sbjct: 443 IRDKFMARDADLILSIPLPMSSREDQISWSFDARGEYTARSGYGALRCFRQSTALVASDV 502

Query: 692 NIRF-WKRMWNLKVPPKVKHFFWRAATDC 775
           +  F W ++W +  PPK+ +F WRAA +C
Sbjct: 503 DSNFVWAQLWKVTAPPKILNFAWRAARNC 531



 Score = 20.8 bits (42), Expect(3) = 2e-43
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 11  LSILPDSDENRDMERLMCKFWWKTSTKKR 97
           L +LP  D  RD+E +M  F+W ++ + R
Sbjct: 275 LLLLP-KDLCRDIESMMNGFFWDSNPQCR 302


>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
            gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
            Japonica Group]
          Length = 1453

 Score =  134 bits (337), Expect(2) = 6e-42
 Identities = 61/143 (42%), Positives = 87/143 (60%)
 Frame = +3

Query: 87   QKKDKGIHWMSWDRMCTSKMYGGLGFRHLHEFNLALLGKQGWRLIINPDSLVAKIFKARY 266
            Q+K+  +HW+SW+++   K  GGLGFR +H FNLA+L KQGWRLI NP+SL A++ KA+Y
Sbjct: 961  QEKENKMHWLSWEKLTEPKWAGGLGFRDIHAFNLAMLAKQGWRLIQNPESLCAQVLKAKY 1020

Query: 267  YPQDNFLTAKLGGSPSFVWRSVLEAQSLIKQGIACRVGNGKSISIANDPWLPDDVNPYVQ 446
            YP  N  +AK   + S+ WRS+      ++ G+  RVGNG +I+I +DPW+P D      
Sbjct: 1021 YPSGNIFSAKKCANMSYTWRSICRGLLTLRDGMIWRVGNGAAINIWSDPWIPSDHTRRPI 1080

Query: 447  TISNSVQGMSVSSLLNTEESGWD 515
            T         V  L++     WD
Sbjct: 1081 TPRGRNLVTRVEELIDPSTGSWD 1103



 Score = 63.2 bits (152), Expect(2) = 6e-42
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
 Frame = +2

Query: 518  KLVRDVFDDRDANIILAIPLRTEEEDRWYWRKEKLGNYSVKSAYNI-----IQQSKS--- 673
            +L+   F   D N+I  IP+  E +D   W  ++ G +SVKSAY +     +Q+ K    
Sbjct: 1105 ELLTQTFWPEDVNMIRTIPVHIEMDDMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSA 1164

Query: 674  --HNNSIVNIRFWKRMWNLKVPPKVKHFFWR 760
               N S     +WK++W +++P KVKHF WR
Sbjct: 1165 GLSNGSTEREMYWKKVWKMQLPGKVKHFIWR 1195


>gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japonica Group]
          Length = 560

 Score =  134 bits (337), Expect(2) = 6e-42
 Identities = 61/143 (42%), Positives = 87/143 (60%)
 Frame = +3

Query: 87  QKKDKGIHWMSWDRMCTSKMYGGLGFRHLHEFNLALLGKQGWRLIINPDSLVAKIFKARY 266
           Q+K+  +HW+SW+++   K  GGLGFR +H FNLA+L KQGWRLI NP+SL A++ KA+Y
Sbjct: 68  QEKENKMHWLSWEKLTEPKWAGGLGFRDIHAFNLAMLAKQGWRLIQNPESLCAQVLKAKY 127

Query: 267 YPQDNFLTAKLGGSPSFVWRSVLEAQSLIKQGIACRVGNGKSISIANDPWLPDDVNPYVQ 446
           YP  N  +AK   + S+ WRS+      ++ G+  RVGNG +I+I +DPW+P D      
Sbjct: 128 YPSGNIFSAKKCANMSYTWRSICRGLLTLRDGMIWRVGNGAAINIWSDPWIPSDHTRRPI 187

Query: 447 TISNSVQGMSVSSLLNTEESGWD 515
           T         V  L++     WD
Sbjct: 188 TPRGRNLVTRVEELIDPSTGSWD 210



 Score = 63.2 bits (152), Expect(2) = 6e-42
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
 Frame = +2

Query: 518 KLVRDVFDDRDANIILAIPLRTEEEDRWYWRKEKLGNYSVKSAYNI-----IQQSKS--- 673
           +L+   F   D N+I  IP+  E +D   W  ++ G +SVKSAY +     +Q+ K    
Sbjct: 212 ELLTQTFWPEDVNMIRTIPVHIEMDDMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSA 271

Query: 674 --HNNSIVNIRFWKRMWNLKVPPKVKHFFWR 760
              N S     +WK++W +++P KVKHF WR
Sbjct: 272 GLSNGSTEREMYWKKVWKMQLPGKVKHFIWR 302


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score =  139 bits (351), Expect(2) = 3e-41
 Identities = 60/108 (55%), Positives = 82/108 (75%)
 Frame = +3

Query: 99   KGIHWMSWDRMCTSKMYGGLGFRHLHEFNLALLGKQGWRLIINPDSLVAKIFKARYYPQD 278
            KGIHW  W  +C SK  GGLGFR L  FN ALLGKQGWRL++ PDSLVA++ KA+Y+P D
Sbjct: 1121 KGIHWRRWSDLCFSKKDGGLGFRDLSLFNQALLGKQGWRLMMYPDSLVARMLKAKYFPWD 1180

Query: 279  NFLTAKLGGSPSFVWRSVLEAQSLIKQGIACRVGNGKSISIANDPWLP 422
            +F+ A+LG SPS++WRS L  + L+++G+  R+G+GK + +  DPW+P
Sbjct: 1181 DFMEAELGSSPSYLWRSFLWGRELLRKGVRWRIGDGKEVRVFIDPWVP 1228



 Score = 55.5 bits (132), Expect(2) = 3e-41
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +2

Query: 536  FDDRDANIILAIPL-RTEEEDRWYWRKEKLGNYSVKSAYNIIQQSKSHNNSIVNI----- 697
            F D +   I +I +  T   D + W   K G Y+VKS Y +    + +    +NI     
Sbjct: 1266 FTDDECEAISSITVGATRRPDVYMWNYCKNGRYTVKSGYWLA--CEENREEAINIVLAPR 1323

Query: 698  RFWKRMWNLKVPPKVKHFFWRAA 766
             FWK +W LK+PPK+ HF WR +
Sbjct: 1324 NFWKHLWKLKLPPKINHFLWRCS 1346


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  137 bits (345), Expect(2) = 9e-41
 Identities = 66/141 (46%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
 Frame = +3

Query: 99   KGIHWMSWDRMCTSKMYGGLGFRHLHEFNLALLGKQGWRLIINPDSLVAKIFKARYYPQD 278
            +G+HWM+WD++C+SK  GGLGFR++ +FN ALL KQ WRLI  PDSL AK+FK RY+ + 
Sbjct: 618  RGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKS 677

Query: 279  NFLTAKLGGSPSFVWRSVLEAQSLIKQGIACRVGNGKSISIANDPWLPDDVNPYVQTISN 458
            N L +    SPS+ WRS++ A+SL+ +G+  RVG+G SIS+ NDPW+P    P       
Sbjct: 678  NPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQF-PRPAKYGG 736

Query: 459  SV--QGMSVSSLLNTEESGWD 515
            S+    + V SL+++  + W+
Sbjct: 737  SIVDPSLKVKSLIDSRSNFWN 757



 Score = 56.2 bits (134), Expect(2) = 9e-41
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +2

Query: 521  LVRDVFDDRDANIILAIPLRTEE-EDRWYWRKEKLGNYSVKSAYNIIQQSKSHNNSIVN- 694
            L++++FD  D  +I A+P+     ED   W   K GNY+VKS Y+  +   +   +++  
Sbjct: 760  LLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGP 819

Query: 695  --IRFWKRMWNLKVPPKVKHFFWRAATDC 775
                    +W ++ PPK++HF W+  + C
Sbjct: 820  DLTTLKAYIWKVQCPPKLRHFLWQILSGC 848