BLASTX nr result

ID: Bupleurum21_contig00026268 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026268
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30833.3| unnamed protein product [Vitis vinifera]               90   2e-16
ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]    90   2e-16
emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]    90   2e-16
ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15

>emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/65 (64%), Positives = 50/65 (76%)
 Frame = +2

Query: 179 LEFDLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFR 358
           LE D++ GSALV  YLK G M  A+  FEELP+RDVVLWNAM+NGY+ IG+ + VLE FR
Sbjct: 167 LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFR 226

Query: 359 RMKDE 373
           RM DE
Sbjct: 227 RMNDE 231



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/59 (45%), Positives = 37/59 (62%)
 Frame = +2

Query: 188 DLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFRRM 364
           D+   +A++  Y KCG MRDA  VFE +  +DV  WN MI GY + G  ++ LE+F RM
Sbjct: 378 DVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRM 436


>ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/65 (64%), Positives = 50/65 (76%)
 Frame = +2

Query: 179 LEFDLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFR 358
           LE D++ GSALV  YLK G M  A+  FEELP+RDVVLWNAM+NGY+ IG+ + VLE FR
Sbjct: 167 LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFR 226

Query: 359 RMKDE 373
           RM DE
Sbjct: 227 RMNDE 231



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/59 (45%), Positives = 37/59 (62%)
 Frame = +2

Query: 188 DLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFRRM 364
           D+   +A++  Y KCG MRDA  VFE +  +DV  WN MI GY + G  ++ LE+F RM
Sbjct: 378 DVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRM 436


>emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/65 (64%), Positives = 50/65 (76%)
 Frame = +2

Query: 179 LEFDLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFR 358
           LE D++ GSALV  YLK G M  A+  FEELP+RDVVLWNAM+NGY+ IG+ + VLE FR
Sbjct: 87  LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFR 146

Query: 359 RMKDE 373
           RM DE
Sbjct: 147 RMNDE 151



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/59 (45%), Positives = 37/59 (62%)
 Frame = +2

Query: 188 DLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFRRM 364
           D+   +A++  Y KCG MRDA  VFE +  +DV  WN MI GY + G  ++ LE+F RM
Sbjct: 298 DVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRM 356


>emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/65 (64%), Positives = 50/65 (76%)
 Frame = +2

Query: 179 LEFDLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFR 358
           LE D++ GSALV  YLK G M  A+  FEELP+RDVVLWNAM+NGY+ IG+ + VLE FR
Sbjct: 167 LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFR 226

Query: 359 RMKDE 373
           RM DE
Sbjct: 227 RMNDE 231



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/59 (45%), Positives = 37/59 (62%)
 Frame = +2

Query: 188 DLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFRRM 364
           D+   +A++  Y KCG MRDA  VFE +  +DV  WN MI GY + G  ++ LE+F RM
Sbjct: 378 DVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRM 436


>ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 43/62 (69%), Positives = 50/62 (80%)
 Frame = +2

Query: 179 LEFDLYFGSALVPFYLKCGCMRDAKEVFEELPVRDVVLWNAMINGYSLIGELDKVLEVFR 358
           LE D++ GSALV  YLK G M DA++VF EL +RDVVLWNAMINGY+ IG LD+ LEVFR
Sbjct: 141 LELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFR 200

Query: 359 RM 364
           RM
Sbjct: 201 RM 202


Top