BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026173
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    60   2e-07
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A...    58   7e-07
ref|XP_004174134.1| PREDICTED: uncharacterized protein LOC101232...    57   1e-06
ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein A...    57   2e-06
ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp....    57   2e-06

>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
 Frame = +3

Query: 12   SLWVD*FRTHYV-RSGSIWNAELKANSSWCVRKILNCRNEVLNFIQYGIGRNSEFFFWLD 188
            SLWV   + H + +S S WN   K + SW  + +L  R     FI+  +G   +  FW D
Sbjct: 790  SLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFD 849

Query: 189  PW-PGTPLISRFGTQIVSIMESNIEAKEASYMNENRWSLGPSNHVLATEMRHLLSSINI- 362
             W P  PLI   G +    +  ++ AK +       WS+       A  +   L++I++ 
Sbjct: 850  NWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTNISMP 909

Query: 363  ---QAADSIKW----DGXXXXXXXXXXXXXRPRRPPVPWASAV 470
               Q  DS  W                   RP   PVPWA AV
Sbjct: 910  SDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAV 952


>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 288

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
 Frame = +3

Query: 12  SLWVD*FRTHYVRSGSIWNAELKANSSWCVRKILNCRNEVLNFIQYGIGRNSEFFFWLDP 191
           SLWV     + ++  S+W  ++    SWC R IL  R+ +   ++  +G   +   WLDP
Sbjct: 48  SLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDP 107

Query: 192 -WPGTPLISRFGTQIVSIMESNIEAKEASYMNEN---RWSL 302
              G P+I +FG +++   +S  +A+   +M  +   RWSL
Sbjct: 108 RIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSL 148


>ref|XP_004174134.1| PREDICTED: uncharacterized protein LOC101232257, partial [Cucumis
           sativus]
          Length = 297

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
 Frame = +3

Query: 3   RNHSLWVD*FRTHYVRSGSIWNAELKANSSWCVRKILNCRNEVLNFIQYGIGRNSEFFFW 182
           ++ SLWV    ++ ++  S+W  +     SWC R+IL  ++ +   ++  +G   ++  W
Sbjct: 113 KSGSLWVAWVESYILKGRSLWEIDAGVGRSWCFREILRKQDILKAHVKMEVGNGRKYRVW 172

Query: 183 LDPW-PGTPLISRFGTQIVSIMESNIEAKEASYMNEN---RWSL 302
           L PW  G P+I +FG +++    S  +A    +M  +   RW L
Sbjct: 173 LVPWIQGGPIIQQFGERVIYDASSRWDASLVDFMGRDDDWRWPL 216


>ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 265

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +3

Query: 3   RNHSLWVD*FRTHYVRSGSIWNAELKANSSWCVRKILNCRNEVLNFIQYGIGRNSEFFFW 182
           ++ SLWV     + ++  S+W  ++    SWC R IL  R  +   +   +G   +   W
Sbjct: 167 KSGSLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKREILEAHVNIEVGNGKKCRVW 226

Query: 183 LDPW-PGTPLISRFGTQIVSIMESNIEAKEASYMNEN 290
           LDPW  G P+I +FG  ++    S  +A+   +M  +
Sbjct: 227 LDPWIQGGPIIQQFGESVIYDAGSRWDARLVDFMGRD 263


>ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323307|gb|EFH53728.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 328

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
 Frame = +3

Query: 3   RNHSLWVD*FRTHYVRSGSIWNAELK-ANSSWCVRKILNCRNEVLNFIQYGIGRNSEFFF 179
           R+ SLWV   R+ Y+ +  +W    K A+ S   RK+L  R +VL F    IG +   FF
Sbjct: 40  RDGSLWVAWIRSKYLFTSPLWTLNGKNASYSRIFRKLLQLRPKVLKFFSIKIGNSDSTFF 99

Query: 180 WLDPW-PGTPLISRFGTQIVSIMESNIEAKEASYMNENRWSLGPSNHVLATEMRHLLSSI 356
           W DPW P   L    G+   + +  ++ +  A    E+ WSL  +       +   +S+I
Sbjct: 100 WWDPWTPFGSLYHFLGSDGPTHLGISLFSTVAELRIEDGWSLPNARSEKQVLLHSFISTI 159

Query: 357 NIQAA-DSIKW 386
           +I ++ D++ W
Sbjct: 160 SISSSNDTLVW 170