BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00025707
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABB47092.1| retrotransposon protein, putative, Ty3-gypsy subc...    57   2e-06
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    57   2e-06
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    57   2e-06
gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Jap...    57   2e-06
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    56   3e-06

>gb|ABB47092.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1064

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
 Frame = -3

Query: 272 NITSGPRAA---VSNIISFSDADYDNQAPNNQDALVVSVDIADFDVARCLIDNGSSADIL 102
           NITS    A   V+ +ISF   D +     +QD LV+S +IA F+V R L+D GSSADI+
Sbjct: 8   NITSAGEGAPQYVNQLISFGPEDAEGVLFPHQDPLVISAEIAGFEVRRILVDEGSSADII 67

Query: 101 FISAFKEMDAIKPMTPNLETDNIPSLYGVGHQP 3
           F  A+ +M     +     T    SL G G +P
Sbjct: 68  FAEAYAKMG----LPTQALTPAPASLRGFGGEP 96


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1889

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = -3

Query: 263 SGPRAAVSNIISFSDADYDNQAPNNQDALVVSVDIADFDVARCLIDNGSSADILFISAFK 84
           S P      +ISF   D +     +QD LVVSV+IA  +V R LID GSSAD+LF  AFK
Sbjct: 727 SNPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFK 786

Query: 83  EM 78
           +M
Sbjct: 787 KM 788


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/62 (48%), Positives = 40/62 (64%)
 Frame = -3

Query: 263 SGPRAAVSNIISFSDADYDNQAPNNQDALVVSVDIADFDVARCLIDNGSSADILFISAFK 84
           S P A  + +ISF   D +     +QD LV+SV+IA  +V R L+D GSSAD+LF  AFK
Sbjct: 244 SVPPAYSNTVISFGPEDAEGILFPHQDPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFK 303

Query: 83  EM 78
           +M
Sbjct: 304 KM 305


>gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1497

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
 Frame = -3

Query: 272 NITSGPRAA---VSNIISFSDADYDNQAPNNQDALVVSVDIADFDVARCLIDNGSSADIL 102
           NITS    A   V+ +ISF   D +     +QD LV+S +IA F+V R L+D GSSADI+
Sbjct: 409 NITSAGEGAPQYVNQLISFGPEDAEGVLFPHQDPLVISAEIAGFEVRRILVDEGSSADII 468

Query: 101 FISAFKEMDAIKPMTPNLETDNIPSLYGVGHQP 3
           F  A+ +M     +     T    SL G G +P
Sbjct: 469 FAEAYAKMG----LPTQALTPAPASLRGFGGEP 497


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1980

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = -3

Query: 263 SGPRAAVSNIISFSDADYDNQAPNNQDALVVSVDIADFDVARCLIDNGSSADILFISAFK 84
           S P      +ISF   D +     +QD LVVSV+IA  +V R LID GSSAD+LF  AFK
Sbjct: 727 SKPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFK 786

Query: 83  EM 78
           +M
Sbjct: 787 KM 788