BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00025697
         (664 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi...   315   6e-84
emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]   315   6e-84
emb|CBI24272.3| unnamed protein product [Vitis vinifera]              289   4e-76
ref|XP_002991922.1| hypothetical protein SELMODRAFT_134446 [Sela...   148   8e-34
ref|NP_173402.2| pentatricopeptide repeat-containing protein [Ar...   143   3e-32

>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  315 bits (806), Expect = 6e-84
 Identities = 145/223 (65%), Positives = 186/223 (83%), Gaps = 3/223 (1%)
 Frame = -3

Query: 662 MLQSLDFTNPYECVEIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYC 483
           +L S+D TNP EC+EIYA ILQKCRK+ +L LGFQVHA ++V GV++C FLGS+L+E+YC
Sbjct: 76  LLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC 135

Query: 482 KLKCVACARQLFDELRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPK 303
           +  CV  AR++FD++ ERNVFSWT+I+ MY  +GD+EE I+LFY+M+ EGVRPDHFVFPK
Sbjct: 136 QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 195

Query: 302 VFKACAELKDYRAGKDVYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARRIL--MNCKD 129
           VFKAC+ELK+YR GKDVYDYMLSIGFEGN CVK S++DMF+ CGR+DIARR    +  KD
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 255

Query: 128 V-MWNMLVSGFVKKKDFEKALRCIYDMKLDDVLPDRITWNSVI 3
           V MWN++VSG+  K +F+KAL+CI DMKL  V PD++TWN++I
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAII 298



 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 42/146 (28%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
 Frame = -3

Query: 428 NVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGKDVY 249
           NV SWT+++    + G   E + +F  M+ EGV+P+         AC  L   R G++++
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 248 DYMLSI-GFEGNLCVKRSVVDMFVNCGRLDIARR---ILMNCKDVMWNMLVSGFVKKKDF 81
            Y + +   + +L V  S+VD +  C  +++ARR   ++     V WN +++G+  +   
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445

Query: 80  EKALRCIYDMKLDDVLPDRITWNSVI 3
           E+A+  + +MK   + PD ITWN ++
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLV 471



 Score = 85.9 bits (211), Expect = 6e-15
 Identities = 53/203 (26%), Positives = 100/203 (49%), Gaps = 3/203 (1%)
 Frame = -3

Query: 602  LQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKCVACARQLFDELRERNV 423
            L  C +V +L+LG ++H +++   +EL   +GS LI +Y     +  A  +F EL  R+V
Sbjct: 506  LAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDV 565

Query: 422  FSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGKDVYDY 243
              W SI+   ++ G     + L   M    V  +         AC++L   R GK+++ +
Sbjct: 566  VVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQF 625

Query: 242  MLSIGFEGNLCVKRSVVDMFVNCGRLDIARRI--LMNCKD-VMWNMLVSGFVKKKDFEKA 72
            ++  G +    +  S++DM+  CG +  +RRI  LM  +D V WN+++S +        A
Sbjct: 626  IIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDA 685

Query: 71   LRCIYDMKLDDVLPDRITWNSVI 3
            +      +   + P+ IT+ +++
Sbjct: 686  VNLFQQFRTMGLKPNHITFTNLL 708



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 52/242 (21%), Positives = 108/242 (44%), Gaps = 39/242 (16%)
 Frame = -3

Query: 611  ALILQKCRKVGDLELGFQVHAHMI-VCGVELCVFLGSQLIELYCKLKCVACARQLFDELR 435
            A  +  C  +  L  G ++H + I V  ++  + +G+ L++ Y K + V  AR+ F  ++
Sbjct: 366  ASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIK 425

Query: 434  ERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVF------------------ 309
            + ++ SW +++  Y+  G HEE I L   M  +G+ PD   +                  
Sbjct: 426  QTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALE 485

Query: 308  -----------------PKVFKACAELKDYRAGKDVYDYMLSIGFEGNLCVKRSVVDMFV 180
                                  AC ++++ + GK+++ Y+L    E +  V  +++ M+ 
Sbjct: 486  FFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYS 545

Query: 179  NCGRLDIARRIL--MNCKD-VMWNMLVSGFVKKKDFEKALRCIYDMKLDDVLPDRITWNS 9
             C  L++A  +   ++ +D V+WN ++S   +      AL  + +M L +V  + +T  S
Sbjct: 546  GCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVS 605

Query: 8    VI 3
             +
Sbjct: 606  AL 607



 Score = 70.1 bits (170), Expect = 4e-10
 Identities = 32/126 (25%), Positives = 66/126 (52%)
 Frame = -3

Query: 662 MLQSLDFTNPYECVEIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYC 483
           +L+ ++ +N           L  C K+  L  G ++H  +I CG++ C F+ + LI++Y 
Sbjct: 587 LLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 646

Query: 482 KLKCVACARQLFDELRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPK 303
           +   +  +R++FD + +R++ SW  ++ +Y   G   + + LF      G++P+H  F  
Sbjct: 647 RCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTN 706

Query: 302 VFKACA 285
           +  AC+
Sbjct: 707 LLSACS 712


>emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  315 bits (806), Expect = 6e-84
 Identities = 145/223 (65%), Positives = 186/223 (83%), Gaps = 3/223 (1%)
 Frame = -3

Query: 662 MLQSLDFTNPYECVEIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYC 483
           +L S+D TNP EC+EIYA ILQKCRK+ +L LGFQVHA ++V GV++C FLGS+L+E+YC
Sbjct: 76  LLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC 135

Query: 482 KLKCVACARQLFDELRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPK 303
           +  CV  AR++FD++ ERNVFSWT+I+ MY  +GD+EE I+LFY+M+ EGVRPDHFVFPK
Sbjct: 136 QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 195

Query: 302 VFKACAELKDYRAGKDVYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARRIL--MNCKD 129
           VFKAC+ELK+YR GKDVYDYMLSIGFEGN CVK S++DMF+ CGR+DIARR    +  KD
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 255

Query: 128 V-MWNMLVSGFVKKKDFEKALRCIYDMKLDDVLPDRITWNSVI 3
           V MWN++VSG+  K +F+KAL+CI DMKL  V PD++TWN++I
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAII 298



 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 42/146 (28%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
 Frame = -3

Query: 428 NVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGKDVY 249
           NV SWT+++    + G   E + +F  M+ EGV+P+         AC  L   R G++++
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 248 DYMLSI-GFEGNLCVKRSVVDMFVNCGRLDIARR---ILMNCKDVMWNMLVSGFVKKKDF 81
            Y + +   + +L V  S+VD +  C  +++ARR   ++     V WN +++G+  +   
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445

Query: 80  EKALRCIYDMKLDDVLPDRITWNSVI 3
           E+A+  + +MK   + PD ITWN ++
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLV 471



 Score = 85.5 bits (210), Expect = 8e-15
 Identities = 53/203 (26%), Positives = 100/203 (49%), Gaps = 3/203 (1%)
 Frame = -3

Query: 602  LQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKCVACARQLFDELRERNV 423
            L  C +V +L+LG ++H +++   +EL   +GS LI +Y     +  A  +F EL  R+V
Sbjct: 506  LAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDV 565

Query: 422  FSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGKDVYDY 243
              W SI+   ++ G     + L   M    V  +         AC++L   R GK+++ +
Sbjct: 566  VVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQF 625

Query: 242  MLSIGFEGNLCVKRSVVDMFVNCGRLDIARRI--LMNCKD-VMWNMLVSGFVKKKDFEKA 72
            ++  G +    +  S++DM+  CG +  +RRI  LM  +D V WN+++S +        A
Sbjct: 626  IIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDA 685

Query: 71   LRCIYDMKLDDVLPDRITWNSVI 3
            +      +   + P+ IT+ +++
Sbjct: 686  VNLFQXFRTMGLKPNHITFTNLL 708



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 52/242 (21%), Positives = 108/242 (44%), Gaps = 39/242 (16%)
 Frame = -3

Query: 611  ALILQKCRKVGDLELGFQVHAHMI-VCGVELCVFLGSQLIELYCKLKCVACARQLFDELR 435
            A  +  C  +  L  G ++H + I V  ++  + +G+ L++ Y K + V  AR+ F  ++
Sbjct: 366  ASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIK 425

Query: 434  ERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVF------------------ 309
            + ++ SW +++  Y+  G HEE I L   M  +G+ PD   +                  
Sbjct: 426  QTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALE 485

Query: 308  -----------------PKVFKACAELKDYRAGKDVYDYMLSIGFEGNLCVKRSVVDMFV 180
                                  AC ++++ + GK+++ Y+L    E +  V  +++ M+ 
Sbjct: 486  FFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYS 545

Query: 179  NCGRLDIARRIL--MNCKD-VMWNMLVSGFVKKKDFEKALRCIYDMKLDDVLPDRITWNS 9
             C  L++A  +   ++ +D V+WN ++S   +      AL  + +M L +V  + +T  S
Sbjct: 546  GCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVS 605

Query: 8    VI 3
             +
Sbjct: 606  AL 607



 Score = 70.5 bits (171), Expect = 3e-10
 Identities = 32/126 (25%), Positives = 66/126 (52%)
 Frame = -3

Query: 662 MLQSLDFTNPYECVEIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYC 483
           +L+ ++ +N           L  C K+  L  G ++H  +I CG++ C F+ + LI++Y 
Sbjct: 587 LLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 646

Query: 482 KLKCVACARQLFDELRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPK 303
           +   +  +R++FD + +R++ SW  ++ +Y   G   + + LF      G++P+H  F  
Sbjct: 647 RCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTN 706

Query: 302 VFKACA 285
           +  AC+
Sbjct: 707 LLSACS 712


>emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  289 bits (739), Expect = 4e-76
 Identities = 137/219 (62%), Positives = 175/219 (79%), Gaps = 3/219 (1%)
 Frame = -3

Query: 650 LDFTNPYECVEIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKC 471
           +D TNP EC+EIYA ILQKCRK+ +L LGFQVHA ++V GV++C FLGS+L+E+YC+  C
Sbjct: 1   MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60

Query: 470 VACARQLFDELRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKA 291
           V  AR++FD++ ERNVFSWT+I+ MY  +GD+EE I+LFY+M+ EGVRPDHFVFPKVFKA
Sbjct: 61  VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 120

Query: 290 CAELKDYRAGKDVYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARRIL--MNCKDV-MW 120
           C+ELK+YR GKDVYDYMLSIGFEGN CVK S++DMF+ CGR+DIARR    +  KDV MW
Sbjct: 121 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 180

Query: 119 NMLVSGFVKKKDFEKALRCIYDMKLDDVLPDRITWNSVI 3
           N++VSG+  K +F+KAL     M L+ V P+ IT  S +
Sbjct: 181 NIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAV 219



 Score = 92.4 bits (228), Expect = 7e-17
 Identities = 53/217 (24%), Positives = 109/217 (50%), Gaps = 12/217 (5%)
 Frame = -3

Query: 617 IYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKCVACARQLFDEL 438
           ++  + + C ++ +  +G  V+ +M+  G E    +   +++++ K   +  AR+ F+E+
Sbjct: 113 VFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEI 172

Query: 437 RERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGK 258
             ++VF W  +V  Y+  G+ ++ + +F  M+ EGV+P+         AC  L   R G+
Sbjct: 173 EFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 232

Query: 257 DVYDYMLSI-GFEGNLCVKRSVVDMFVNCGRLDIARR---ILMNCKDVMWN--MLVSGFV 96
           +++ Y + +   + +L V  S+VD +  C  +++ARR   ++     V WN  + V+GF 
Sbjct: 233 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFT 292

Query: 95  KKKDFEKALRCIYDMKL------DDVLPDRITWNSVI 3
           +  D + AL     M +      +    D + WNS+I
Sbjct: 293 QYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSII 329



 Score = 70.1 bits (170), Expect = 4e-10
 Identities = 32/126 (25%), Positives = 66/126 (52%)
 Frame = -3

Query: 662 MLQSLDFTNPYECVEIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYC 483
           +L+ ++ +N           L  C K+  L  G ++H  +I CG++ C F+ + LI++Y 
Sbjct: 344 LLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 403

Query: 482 KLKCVACARQLFDELRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPK 303
           +   +  +R++FD + +R++ SW  ++ +Y   G   + + LF      G++P+H  F  
Sbjct: 404 RCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTN 463

Query: 302 VFKACA 285
           +  AC+
Sbjct: 464 LLSACS 469



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 3/172 (1%)
 Frame = -3

Query: 509 GSQLIELYCKLKCVACARQLFDELRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGV 330
           G   +E + ++  +AC+  +F EL  R+V  W SI+   ++ G     + L   M    V
Sbjct: 297 GKAALEFFQRMH-IACS--VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353

Query: 329 RPDHFVFPKVFKACAELKDYRAGKDVYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARR 150
             +         AC++L   R GK+++ +++  G +    +  S++DM+  CG +  +RR
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413

Query: 149 I--LMNCKD-VMWNMLVSGFVKKKDFEKALRCIYDMKLDDVLPDRITWNSVI 3
           I  LM  +D V WN+++S +        A+      +   + P+ IT+ +++
Sbjct: 414 IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLL 465


>ref|XP_002991922.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
           gi|300140308|gb|EFJ07033.1| hypothetical protein
           SELMODRAFT_134446 [Selaginella moellendorffii]
          Length = 690

 Score =  148 bits (374), Expect = 8e-34
 Identities = 70/204 (34%), Positives = 125/204 (61%), Gaps = 3/204 (1%)
 Frame = -3

Query: 620 EIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKCVACARQLFDE 441
           ++YA +L++C +   L  G  +HAH++  G     FLG+ L+ +Y K   +A A++ FD+
Sbjct: 37  DVYATLLRECERSKSLSQGRYIHAHILASGKSGKTFLGNLLVRMYGKCGSIADAKEAFDQ 96

Query: 440 LRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAG 261
           +  +NVFSWT ++G +++ G H + I++++ M+ EGVRPD   F  +   C+EL+ ++AG
Sbjct: 97  IHRKNVFSWTIMLGAFADCGHHRQAIQIYHAMVLEGVRPDCVAFASIAGICSELQCFQAG 156

Query: 260 KDVYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIAR---RILMNCKDVMWNMLVSGFVKK 90
           K ++D +L  G E ++ V  ++V M+  CGR+D AR   R + N   + WN +++ F + 
Sbjct: 157 KAIHDCVLEQGAESDVIVANNLVTMYSKCGRIDGARCVFRRIKNKNPISWNAMIAAFAQC 216

Query: 89  KDFEKALRCIYDMKLDDVLPDRIT 18
            DF  AL    ++ ++  +PD+IT
Sbjct: 217 GDFASAL----ELYVEHPVPDKIT 236



 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 36/238 (15%)
 Frame = -3

Query: 608 LILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKCVACARQLFD--ELR 435
           L  + C  +GDL+ G ++HA  +  G+E  + + + LI +Y K  CV  A++LFD  E +
Sbjct: 239 LAAKACASLGDLDRGREIHARAVELGLESDLLVANSLIGMYGKCYCVGDAKRLFDGLEAK 298

Query: 434 ERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGKD 255
            R+V SW SI+  Y   G   + + LF   ++  V P+   F  +  AC+ L D   G+ 
Sbjct: 299 NRDVISWNSIIAAYILAGMSSQALELFRERMD--VEPNRITFIALIDACSTLCDLEQGRW 356

Query: 254 VYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIA---------RR------ILMNCK---- 132
           +++ + S  F   + V+  ++ M+  CG ++ A         RR      ++M CK    
Sbjct: 357 IHERIRSSEFAREVAVENGLLLMYAKCGSIEEAMAIFESMEGRRTLATSLVIMYCKFGCV 416

Query: 131 --------------DVMWNMLVSGFVKKKDFE-KALRCIYDMKLDDVLPDRITWNSVI 3
                          V W  +++ F +++    +A+     M LD   PD +T+ SV+
Sbjct: 417 ADAMAVFSGMRSRDVVAWTAMITAFSQQEHTSMEAVDYFCQMDLDGSKPDEVTFASVL 474



 Score = 85.5 bits (210), Expect = 8e-15
 Identities = 50/176 (28%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
 Frame = -3

Query: 512 LGSQLIELYCKLKCVACARQLFDELRERNVFSWTSIVGMYSEVGDHE--EVIRLFYVMIE 339
           L + L+ +YCK  CVA A  +F  +R R+V +WT+++  +S+  +H   E +  F  M  
Sbjct: 402 LATSLVIMYCKFGCVADAMAVFSGMRSRDVVAWTAMITAFSQQ-EHTSMEAVDYFCQMDL 460

Query: 338 EGVRPDHFVFPKVFKACAELKDYRAGKDVYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDI 159
           +G +PD   F  V  + A L     G+ V+  +L+ GF+ ++ V  +++DM+  CG L  
Sbjct: 461 DGSKPDEVTFASVLGSIARLGLLSRGRSVHCDVLACGFQSDVVVGTALLDMYSKCGSLID 520

Query: 158 ARRILMNCKD----VMWNMLVSGFVKKKDFEKALRCIYDMKLDDVLPDRITWNSVI 3
           A+R   +       V WN +++   K  D+         M L+ V P+ +T+ +++
Sbjct: 521 AKRAFDDLGGSRNLVSWNAMIAAMAKHGDWSSGFELYRAMILEGVRPNDVTFTNML 576



 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 54/214 (25%), Positives = 105/214 (49%), Gaps = 5/214 (2%)
 Frame = -3

Query: 629 ECVEIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKCVACARQL 450
           +CV  +A I   C ++   + G  +H  ++  G E  V + + L+ +Y K   +  AR +
Sbjct: 136 DCVA-FASIAGICSELQCFQAGKAIHDCVLEQGAESDVIVANNLVTMYSKCGRIDGARCV 194

Query: 449 FDELRERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDY 270
           F  ++ +N  SW +++  +++ GD    + L+   +E  V PD        KACA L D 
Sbjct: 195 FRRIKNKNPISWNAMIAAFAQCGDFASALELY---VEHPV-PDKITLILAAKACASLGDL 250

Query: 269 RAGKDVYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARRIL-----MNCKDVMWNMLVS 105
             G++++   + +G E +L V  S++ M+  C  +  A+R+       N   + WN +++
Sbjct: 251 DRGREIHARAVELGLESDLLVANSLIGMYGKCYCVGDAKRLFDGLEAKNRDVISWNSIIA 310

Query: 104 GFVKKKDFEKALRCIYDMKLDDVLPDRITWNSVI 3
            ++      +AL    +    DV P+RIT+ ++I
Sbjct: 311 AYILAGMSSQALELFRERM--DVEPNRITFIALI 342



 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 5/174 (2%)
 Frame = -3

Query: 650 LDFTNPYECVEIYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKC 471
           LD + P E    +A +L    ++G L  G  VH  ++ CG +  V +G+ L+++Y K   
Sbjct: 460 LDGSKPDEVT--FASVLGSIARLGLLSRGRSVHCDVLACGFQSDVVVGTALLDMYSKCGS 517

Query: 470 VACARQLFDEL-RERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFK 294
           +  A++ FD+L   RN+ SW +++   ++ GD      L+  MI EGVRP+   F  +  
Sbjct: 518 LIDAKRAFDDLGGSRNLVSWNAMIAAMAKHGDWSSGFELYRAMILEGVRPNDVTFTNMLF 577

Query: 293 ACAELKDYRAGKDVYDYMLSIGFEGNLCVKR----SVVDMFVNCGRLDIARRIL 144
            C+          ++D   SI  E  + +      S+VD+    GRL+ A   +
Sbjct: 578 LCSHGGGGDRECGIWDACASIVLEFGVKITPDHHCSIVDVLGRSGRLEEAEEFV 631


>ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g19720; AltName: Full=Protein DYW7
           gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein
           [Arabidopsis thaliana] gi|332191770|gb|AEE29891.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 894

 Score =  143 bits (361), Expect = 3e-32
 Identities = 67/207 (32%), Positives = 121/207 (58%), Gaps = 3/207 (1%)
 Frame = -3

Query: 614 YALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKCVACARQLFDELR 435
           Y  +L+ C   G + LG  +HA   +   E  VF+ ++L+ +Y K  C+A AR++FD +R
Sbjct: 84  YLKLLESCIDSGSIHLGRILHARFGLF-TEPDVFVETKLLSMYAKCGCIADARKVFDSMR 142

Query: 434 ERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGKD 255
           ERN+F+W++++G YS      EV +LF +M+++GV PD F+FPK+ + CA   D  AGK 
Sbjct: 143 ERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKV 202

Query: 254 VYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARRILMNCKD---VMWNMLVSGFVKKKD 84
           ++  ++ +G    L V  S++ ++  CG LD A +     ++   + WN ++  + +   
Sbjct: 203 IHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGK 262

Query: 83  FEKALRCIYDMKLDDVLPDRITWNSVI 3
            E+A+  + +M+ + + P  +TWN +I
Sbjct: 263 HEEAVELVKEMEKEGISPGLVTWNILI 289



 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
 Frame = -3

Query: 428 NVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGKDVY 249
           +VF+WT+++      G   + + +F  M   GV P+         AC+ LK    G +V+
Sbjct: 316 DVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVH 375

Query: 248 DYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARRILMNCKD---VMWNMLVSGFVKKKDFE 78
              + +GF  ++ V  S+VDM+  CG+L+ AR++  + K+     WN +++G+ +     
Sbjct: 376 SIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCG 435

Query: 77  KALRCIYDMKLDDVLPDRITWNSVI 3
           KA      M+  ++ P+ ITWN++I
Sbjct: 436 KAYELFTRMQDANLRPNIITWNTMI 460



 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 50/205 (24%), Positives = 88/205 (42%)
 Frame = -3

Query: 617 IYALILQKCRKVGDLELGFQVHAHMIVCGVELCVFLGSQLIELYCKLKCVACARQLFDEL 438
           ++  ILQ C   GD+E G  +H+ +I  G+  C+ + + ++ +Y K   +  A + F  +
Sbjct: 183 LFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRM 242

Query: 437 RERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGK 258
           RER+V +W S++  Y + G HEE + L   M +EG+ P    +  +     +L    A  
Sbjct: 243 RERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAM 302

Query: 257 DVYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARRILMNCKDVMWNMLVSGFVKKKDFE 78
           D+   M + G            D+F                    W  ++SG +      
Sbjct: 303 DLMQKMETFGI---------TADVFT-------------------WTAMISGLIHNGMRY 334

Query: 77  KALRCIYDMKLDDVLPDRITWNSVI 3
           +AL     M L  V+P+ +T  S +
Sbjct: 335 QALDMFRKMFLAGVVPNAVTIMSAV 359



 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
 Frame = -3

Query: 434 ERNVFSWTSIVGMYSEVGDHEEVIRLFYVMIEEGVRPDHFVFPKVFKACAELKDYRAGKD 255
           +RN  +W  I+  Y + G  +E + LF  M      P+      +  ACA L   +  ++
Sbjct: 486 QRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVRE 545

Query: 254 VYDYMLSIGFEGNLCVKRSVVDMFVNCGRLDIARRIL--MNCKDVM-WNMLVSGFVKKKD 84
           ++  +L    +    VK ++ D +   G ++ +R I   M  KD++ WN L+ G+V    
Sbjct: 546 IHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGS 605

Query: 83  FEKALRCIYDMKLDDVLPDRITWNSVI 3
           +  AL     MK   + P+R T +S+I
Sbjct: 606 YGPALALFNQMKTQGITPNRGTLSSII 632