BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00025555
         (1009 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              225   1e-56
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   224   2e-56
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   216   7e-54
ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme...   215   2e-53
ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arab...   202   1e-49

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  225 bits (574), Expect = 1e-56
 Identities = 132/314 (42%), Positives = 193/314 (61%), Gaps = 5/314 (1%)
 Frame = -3

Query: 929 RSYAQISEEKEIYVFVWHQCIRQRTDTHIATHRLXXXXXXXXXSYTPTRKKLIFS---TE 759
           R+ A + EE  + +      ++ R  + +  + +         S++PT K LI S   T 
Sbjct: 31  RNLASLGEESTLELLRKISHLKIRNLSALINYMVGKAAQGDAASHSPTPKHLISSPSSTP 90

Query: 758 NQESTSIISKQWLILFELEFRKIFLLLNYIGRKKLEHVVTIEEAYKILRMKDYPIEIFES 579
            +      S Q + L ELEFRK FL+L+YIG K+ E +++ EE   IL++K+ P+ +FE+
Sbjct: 91  KKARRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLSAEE---ILKLKNLPMGVFET 147

Query: 578 EVWDMYGRFCCVGDESTDRRKYVNWECGKTHHYHCRVWQDGSFSFQGPYLKTTKTLLHRQ 399
           EVW+  GR      +  DR++  +W+  KTH YHC V  DGS+ F+GPYL  T+T L R 
Sbjct: 148 EVWNNLGRKFI---KEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRV 204

Query: 398 LGDENVLIVKFEE--PRGVSTFFSGNRNALYDKIAKEGILIGQRRYRFFIFKDGERNGKK 225
           LGDEN+L+VKF E      S   S + NA Y+KIA+EGI +G R+YRFF+FKDG +  KK
Sbjct: 205 LGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKK 264

Query: 224 KSPIKSDVKCYFIRMELIAPCDEKLPYIFSNESMHQARCLFMHLHTTPSLAKYVSRCSLI 45
           K+P  S VKCYF+ ME  A          S +++H+ARC+FMH H   S+AKY++R SLI
Sbjct: 265 KNP-TSSVKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLI 314

Query: 44  LSQTIRVEVNLDSV 3
           LS+T++++V+L +V
Sbjct: 315 LSKTVKLDVDLSTV 328


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
           RNA polymerase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 981

 Score =  224 bits (572), Expect = 2e-56
 Identities = 125/259 (48%), Positives = 167/259 (64%)
 Frame = -3

Query: 779 KLIFSTENQESTSIISKQWLILFELEFRKIFLLLNYIGRKKLEHVVTIEEAYKILRMKDY 600
           K + S EN  S  I   Q + L ELEF+K FLLL+YI  ++L  V T +E   I   KD 
Sbjct: 125 KSLKSEENGGSLHI--PQLVALGELEFKKAFLLLSYIPGQQLGQVTTADE---IRLWKDL 179

Query: 599 PIEIFESEVWDMYGRFCCVGDESTDRRKYVNWECGKTHHYHCRVWQDGSFSFQGPYLKTT 420
           P+  +E+ VWD  GR  C     TDRR  + W+ GKTH+Y C V  DGS++F+GP L+ T
Sbjct: 180 PMVAYEAAVWDRLGRRYC---PQTDRRM-LQWDSGKTHYYQCHVAPDGSYTFKGPLLEHT 235

Query: 419 KTLLHRQLGDENVLIVKFEEPRGVSTFFSGNRNALYDKIAKEGILIGQRRYRFFIFKDGE 240
            T LH+ LGDENVL VKF +    S+ +S +R   Y +IAK GI+IG RRY+FF+FKDG 
Sbjct: 236 GTHLHKVLGDENVLTVKFADVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGG 295

Query: 239 RNGKKKSPIKSDVKCYFIRMELIAPCDEKLPYIFSNESMHQARCLFMHLHTTPSLAKYVS 60
           +  KKK      VKCYFIR +  A CD + PYIF+ +S+H+AR  FMH+H  P+LA Y++
Sbjct: 296 KEEKKKDLSTKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMA 355

Query: 59  RCSLILSQTIRVEVNLDSV 3
           R SLILS+T  +EV++  +
Sbjct: 356 RFSLILSKTKTLEVDMTGI 374


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
           vinifera]
          Length = 943

 Score =  216 bits (550), Expect = 7e-54
 Identities = 131/322 (40%), Positives = 192/322 (59%), Gaps = 13/322 (4%)
 Frame = -3

Query: 929 RSYAQISEEKEIYVFVWHQCIRQRTDTHIATHRLXXXXXXXXXSYTPTRKKLIFS---TE 759
           R+ A + EE  + +      ++ R  + +  + +         S++PT K LI S   T 
Sbjct: 31  RNLASLGEESTLELLRKISHLKIRNLSALINYMVGKAAQGDAASHSPTPKHLISSPSSTP 90

Query: 758 NQESTSIISKQWLILFELEFRKIFLLLNYIGRKKLEHVVTIEEAYKILRMKDYPIEIFES 579
            +      S Q + L ELEFRK FL+L+YIG  + E +++ EE   IL++K+ P+ +FE+
Sbjct: 91  KKARRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLSAEE---ILKLKNLPMGVFET 147

Query: 578 EVWDMYGRFCCVGDESTDRRKYVNWECGKTHHYHCRVWQDGSFSFQ--------GPYLKT 423
           EVW+  GR      +  DR++  +W+  KTH YHC V  DGS+ F+        GPYL  
Sbjct: 148 EVWNNLGRKFI---KEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNK 204

Query: 422 TKTLLHRQLGDENVLIVKFEEP--RGVSTFFSGNRNALYDKIAKEGILIGQRRYRFFIFK 249
           T+T L R LGDEN+L+VKF E      S   S + NA Y+KIA+EGI +G R+YRFF+FK
Sbjct: 205 TRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFK 264

Query: 248 DGERNGKKKSPIKSDVKCYFIRMELIAPCDEKLPYIFSNESMHQARCLFMHLHTTPSLAK 69
           DG +  KKK+P  S VKCYF+ ME  A          S +++H+ARC+FMH H   S+AK
Sbjct: 265 DGGKEEKKKNP-TSSVKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAK 314

Query: 68  YVSRCSLILSQTIRVEVNLDSV 3
           Y++R SLILS+T++++V+L +V
Sbjct: 315 YMARFSLILSKTVKLDVDLSTV 336


>ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
           max]
          Length = 953

 Score =  215 bits (547), Expect = 2e-53
 Identities = 115/241 (47%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
 Frame = -3

Query: 716 LFELEFRKIFLLLNYIGRKKLEHVVTIEEAYKILRMKDYPIEIFESEVWDMYGRFCCVGD 537
           L ELEFRK FL+L+YIGR+ LE+ +T     KI  +KD P+  FE  +W+ +G  C + D
Sbjct: 92  LGELEFRKAFLILSYIGRESLENCITDA---KIRSLKDLPMAKFEKTIWEDFGEKC-IYD 147

Query: 536 ESTDRRKYVNWECGKTHHYHCRVWQDGSFSFQGPYLKTTKTLLHRQLGDENVLIVKFEEP 357
           +S   R+ VNW  G+TH Y C V+ DG+  F+GP L++T+T L + LGD+NVL+VKF E 
Sbjct: 148 QSD--RQLVNWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAED 205

Query: 356 RGVSTF--FSGNRNALYDKIAKEGILIGQRRYRFFIFKDGERNGKKKSPIKSDVKCYFIR 183
                F   +   NALY K  KEGI +G R YRFF+FKDG    K+K P  S VKCYF+R
Sbjct: 206 GSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVR 265

Query: 182 MELIAPCDEKLPYIFSNESMHQARCLFMHLH-TTPSLAKYVSRCSLILSQTIRVEVNLDS 6
           M+     DE   YI SN+++ +AR LFMH H   P+L KY++R SLILS+T+++ ++L +
Sbjct: 266 MQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTT 325

Query: 5   V 3
           V
Sbjct: 326 V 326


>ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
           gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
           Full=Probable RNA-dependent RNA polymerase 3;
           Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
           3 gi|330251848|gb|AEC06942.1| RNA-dependent RNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 992

 Score =  202 bits (513), Expect = 1e-49
 Identities = 112/241 (46%), Positives = 157/241 (65%), Gaps = 1/241 (0%)
 Frame = -3

Query: 722 LILFELEFRKIFLLLNYIGRKKL-EHVVTIEEAYKILRMKDYPIEIFESEVWDMYGRFCC 546
           L L ELEF+K FLLL+YIG + L E V++ ++   I + KD P+  +E+ VW+  G+  C
Sbjct: 141 LALGELEFKKAFLLLSYIGGESLVEEVISGDQ---IRKWKDLPMVSYEAAVWNRLGQRYC 197

Query: 545 VGDESTDRRKYVNWECGKTHHYHCRVWQDGSFSFQGPYLKTTKTLLHRQLGDENVLIVKF 366
              E   RR+ +  + G TH+Y C V  DGS+ F+G  L+ T T LH+ LGD+NVL VKF
Sbjct: 198 SPKE---RRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKF 254

Query: 365 EEPRGVSTFFSGNRNALYDKIAKEGILIGQRRYRFFIFKDGERNGKKKSPIKSDVKCYFI 186
           ++  GV T+ + +  + Y  IAK GI++G RRYRFF+FKDG +  KKK      VKCYFI
Sbjct: 255 DKVLGVETYCN-DLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFI 313

Query: 185 RMELIAPCDEKLPYIFSNESMHQARCLFMHLHTTPSLAKYVSRCSLILSQTIRVEVNLDS 6
           R +  A  D + PYIF+ +SMH+AR  FMH++T  SL  Y+SR SLILS+T  +EV++  
Sbjct: 314 RTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTG 373

Query: 5   V 3
           +
Sbjct: 374 I 374