BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024968
         (644 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98207.1| retrotransposon protein, putative, Ty3-gypsy subc...    70   3e-10
gb|ABA97778.2| retrotransposon protein, putative, Ty3-gypsy subc...    70   3e-10
ref|XP_003605752.1| Pol polyprotein [Medicago truncatula] gi|355...    69   1e-09
gb|ABF96568.1| retrotransposon protein, putative, Ty3-gypsy subc...    68   2e-09
gb|AAX94825.1| retrotransposon protein, putative, Ty3-gypsy sub-...    67   3e-09

>gb|ABA98207.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1562

 Score = 70.5 bits (171), Expect = 3e-10
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 25/162 (15%)
 Frame = -3

Query: 432 RYKVSIMEGLGGGHNKETGQGSSVP-------------------------VIPNRTLVMG 328
           RY VS+ME   G  +     GS  P                         V+ N+T +M 
Sbjct: 33  RYHVSVMEIRNGSRDSNNASGSEEPINGARANGASYNSPSPPPENPTIAQVLDNQTQMMT 92

Query: 327 AMRRLVDAMTPEQHQLILNGVPIQLGTTAETSKETEKNHRCTYKQFRDADPPTFRGTPNP 148
            M + +     +Q+  +L  V  Q     +  +      +C   +F    PPTF  T NP
Sbjct: 93  MMMQQMQ----QQYHQVLQQVQQQAQLQQQNLQFGSPPPQCKLLEFLRVKPPTFSSTTNP 148

Query: 147 QVADTWIKEMERVFNISECCEDQKVKFATHSFRGDSVFWWDS 22
             A  W+  +E+  N+ +C E +KV FATH  +G +  WWD+
Sbjct: 149 IEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWWDN 190


>gb|ABA97778.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1557

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 25/162 (15%)
 Frame = -3

Query: 432 RYKVSIMEGLGGGHNKETGQGSSVP-------------------------VIPNRTLVMG 328
           RY VS+ME   G  +     GS  P                         V+ N+T +M 
Sbjct: 66  RYHVSVMEIRNGSRDSNNASGSEEPINGARANGASDNSPSPPPENPTIAQVLDNQTQMMT 125

Query: 327 AMRRLVDAMTPEQHQLILNGVPIQLGTTAETSKETEKNHRCTYKQFRDADPPTFRGTPNP 148
            M + +     +Q+  +L  V  Q     +  +     H+    +F    PPTF  T NP
Sbjct: 126 MMMQQMQ----QQYHQVLQQVQQQAQLQQQNLQFGSPPHQSKLLEFLRVKPPTFSSTTNP 181

Query: 147 QVADTWIKEMERVFNISECCEDQKVKFATHSFRGDSVFWWDS 22
             A  W+  +E+  N+ +C E +KV FATH  +G +  WWD+
Sbjct: 182 IEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASVWWDN 223


>ref|XP_003605752.1| Pol polyprotein [Medicago truncatula] gi|355506807|gb|AES87949.1|
           Pol polyprotein [Medicago truncatula]
          Length = 745

 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 35/99 (35%), Positives = 49/99 (49%)
 Frame = -3

Query: 324 MRRLVDAMTPEQHQLILNGVPIQLGTTAETSKETEKNHRCTYKQFRDADPPTFRGTPNPQ 145
           M R  DA      Q +   V  Q    A  + E         + F   +PPTF+G  +P 
Sbjct: 1   MARRNDAALAAALQAVAQAVGQQPNVNAGANAEARM-----LETFMKKNPPTFKGRCDPD 55

Query: 144 VADTWIKEMERVFNISECCEDQKVKFATHSFRGDSVFWW 28
            A TW+KE+ER+F + +C EDQKV+F TH    ++  WW
Sbjct: 56  GAQTWLKEIERIFRVMQCTEDQKVRFGTHQLAEEADDWW 94


>gb|ABF96568.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1548

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 47/167 (28%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
 Frame = -3

Query: 432 RYKVSIMEGLGGGHNKETGQGSSVP-------------------------VIPNRTLVMG 328
           RY VS+ME   G  +     GS  P                         V+ N+T +M 
Sbjct: 33  RYHVSVMETRNGSRDSNNASGSEKPINGARANSASDNSPSPPPENPTIAQVLDNQTQMMT 92

Query: 327 AMRRLVD-----AMTPEQHQLILNGVPIQLGTTAETSKETEKNHRCTYKQFRDADPPTFR 163
            M + +       +   Q Q  L    +Q G+    SK  E         F    PPTF 
Sbjct: 93  MMMQQMQQQYHQVLQQVQQQAQLQQQNLQFGSPPPQSKLLE---------FLRVKPPTFS 143

Query: 162 GTPNPQVADTWIKEMERVFNISECCEDQKVKFATHSFRGDSVFWWDS 22
            T NP  A  W+  +E+  N+ +C E +KV FATH  +G +  WWD+
Sbjct: 144 STTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWWDN 190


>gb|AAX94825.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550391|gb|ABA93188.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 574

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 58/130 (44%)
 Frame = -3

Query: 411 EGLGGGHNKETGQGSSVPVIPNRTLVMGAMRRLVDAMTPEQHQLILNGVPIQLGTTAETS 232
           E +GG         S  P + NRT+      +++  +  +  Q   N   +Q G     S
Sbjct: 19  EQIGGARATGASDKSPSPPLENRTIAQQQYHQVLQQVQQQAQQQQQN---LQFGLPPPQS 75

Query: 231 KETEKNHRCTYKQFRDADPPTFRGTPNPQVADTWIKEMERVFNISECCEDQKVKFATHSF 52
           K  E         F    PPTF  T NP  A+ W+  +E+  N+ +C + +KV FATH  
Sbjct: 76  KLLE---------FLHVKPPTFSSTTNPIEANDWLHAIEKKLNLLQCNDQEKVAFATHQL 126

Query: 51  RGDSVFWWDS 22
           +G +  WWD+
Sbjct: 127 QGPASVWWDN 136