BLASTX nr result

ID: Bupleurum21_contig00024817 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024817
         (1178 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277216.1| PREDICTED: uncharacterized protein LOC100257...   216   9e-54
ref|XP_002310656.1| predicted protein [Populus trichocarpa] gi|2...   210   6e-52
ref|XP_004137181.1| PREDICTED: uncharacterized protein LOC101218...   208   2e-51
ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like...   205   2e-50
ref|NP_175432.2| uncharacterized protein [Arabidopsis thaliana] ...   200   5e-49

>ref|XP_002277216.1| PREDICTED: uncharacterized protein LOC100257645 [Vitis vinifera]
            gi|297737934|emb|CBI27135.3| unnamed protein product
            [Vitis vinifera]
          Length = 552

 Score =  216 bits (550), Expect = 9e-54
 Identities = 115/213 (53%), Positives = 150/213 (70%), Gaps = 16/213 (7%)
 Frame = +3

Query: 588  MLPTKSSRLLSILGIGASDGDY-SKKSDPSISPPLLKLQTDKEVYRPGDQVIITIEIQNP 764
            MLP + S   S  G G S+  Y S     S   P LKL+TDK+VYRPG+ ++++IEI NP
Sbjct: 1    MLPPRVSFGFSFFGSGDSNKAYDSVGGGKSELVPSLKLRTDKDVYRPGESIVVSIEIHNP 60

Query: 765  --ITD------------CSLLVETLSFEIKGIEKLESQWFTTQGP-GESKQKRGEYVFMD 899
              + D            C LLVE LSFEIKGIEKL+SQW+ TQ P   SKQ+RGE+ F+D
Sbjct: 61   SGVVDELSKKENAGDVLCPLLVEMLSFEIKGIEKLDSQWYATQKPLPGSKQRRGEHTFLD 120

Query: 900  SSIPSLVSNQIISSGGTKTFVVRTLLPNIIPPSFRGATIRYLYYIKSILSGQYLILENGK 1079
             + PS+VSNQI+S+G  KT+V RT LP+I+PPS+RGATIRY YY++  LSG++L+LENG 
Sbjct: 121  CATPSIVSNQIVSAGAVKTYVARTELPSIVPPSYRGATIRYFYYVRCTLSGRWLVLENGH 180

Query: 1080 FPGESIRDISQLVARIPMQLWVPQKTNGLLYED 1178
             P ES +D+ +L ARIP+Q+WV QKT+GLL E+
Sbjct: 181  SPRESRKDLIELEARIPLQIWVTQKTSGLLIEE 213


>ref|XP_002310656.1| predicted protein [Populus trichocarpa] gi|222853559|gb|EEE91106.1|
            predicted protein [Populus trichocarpa]
          Length = 533

 Score =  210 bits (534), Expect = 6e-52
 Identities = 111/199 (55%), Positives = 143/199 (71%), Gaps = 10/199 (5%)
 Frame = +3

Query: 612  LLSILGIGAS---DGDYSKKSDPSISPPLLKLQTDKEVYRPGDQVIITIEIQNPITDCS- 779
            +L+  G G S   D     + D  +  P LK+QTDK+VYRPGD +++TIEI NP    S 
Sbjct: 1    MLAFFGSGGSRKVDNSSDGRKDELV--PTLKVQTDKDVYRPGDSILVTIEISNPKDGASE 58

Query: 780  -----LLVETLSFEIKGIEKLESQWFTTQGP-GESKQKRGEYVFMDSSIPSLVSNQIISS 941
                 LL+E L F I+GI+KL++QWF TQ P   SKQ+RGE+VFMD S  S+VSNQI+SS
Sbjct: 59   DVMSSLLIEKLGFAIRGIQKLDNQWFATQKPLPGSKQRRGEHVFMDCSTSSIVSNQIVSS 118

Query: 942  GGTKTFVVRTLLPNIIPPSFRGATIRYLYYIKSILSGQYLILENGKFPGESIRDISQLVA 1121
            G TKT+VVRTLLP+IIPPS+RGATIRY+YY++S LSGQ L+L+N     ES +D+ QL  
Sbjct: 119  GATKTYVVRTLLPSIIPPSYRGATIRYIYYVESTLSGQQLMLDNTNSHRESSKDLLQLED 178

Query: 1122 RIPMQLWVPQKTNGLLYED 1178
            RIP+Q+WV QK NGL+ E+
Sbjct: 179  RIPLQIWVAQKGNGLIVEE 197


>ref|XP_004137181.1| PREDICTED: uncharacterized protein LOC101218523 [Cucumis sativus]
          Length = 538

 Score =  208 bits (529), Expect = 2e-51
 Identities = 107/190 (56%), Positives = 144/190 (75%), Gaps = 3/190 (1%)
 Frame = +3

Query: 618  SILGIGASDGDYSKKSDPSISPPLLKLQTDKEVYRPGDQVIITIEIQN--PITDCSLLVE 791
            SI G GA+  D  +KS  S   P LKL++DK+VYRPGD V++TIEI +  P  DCSLL+E
Sbjct: 7    SIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIE 66

Query: 792  TLSFEIKGIEKLESQWFTTQGP-GESKQKRGEYVFMDSSIPSLVSNQIISSGGTKTFVVR 968
             L FEI G+ KL++QWF+TQ P   SKQ+RGE++FMD S+ S+VS+QIISSG  K++VVR
Sbjct: 67   RLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAMKSYVVR 126

Query: 969  TLLPNIIPPSFRGATIRYLYYIKSILSGQYLILENGKFPGESIRDISQLVARIPMQLWVP 1148
            + LP  IPPS++GATIRY+YY+KS L G++L  ENG+   ES +D  ++ AR+P+Q+WV 
Sbjct: 127  STLPTCIPPSYKGATIRYMYYVKSTLLGRWLSQENGRSHKESPKDQIEMEARLPLQVWVT 186

Query: 1149 QKTNGLLYED 1178
            QKTNG+L E+
Sbjct: 187  QKTNGMLMEE 196


>ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like protein [Medicago
            truncatula] gi|355520854|gb|AET01308.1| Retrograde Golgi
            transport protein RGP1-like protein [Medicago truncatula]
          Length = 529

 Score =  205 bits (522), Expect = 2e-50
 Identities = 106/190 (55%), Positives = 141/190 (74%), Gaps = 2/190 (1%)
 Frame = +3

Query: 615  LSILGIGASDGDYSKKSDPSIS-PPLLKLQTDKEVYRPGDQVIITIEIQNPITDCSLLVE 791
            LS  G G   G   K S  +    P LKL+TDK+VYRPGD VIITI+I NP    S L+E
Sbjct: 6    LSFFG-GGDSGLLDKNSSKNEEIVPTLKLETDKQVYRPGDPVIITIQISNPSNGYSFLME 64

Query: 792  TLSFEIKGIEKLESQWFTTQGP-GESKQKRGEYVFMDSSIPSLVSNQIISSGGTKTFVVR 968
             LSFEI+GIEKL++QWF TQ P   S+Q+RGE+VF+DSS P LV+NQII++G +K++VVR
Sbjct: 65   RLSFEIRGIEKLDTQWFATQKPLPGSRQRRGEHVFVDSSTPILVANQIINAGTSKSYVVR 124

Query: 969  TLLPNIIPPSFRGATIRYLYYIKSILSGQYLILENGKFPGESIRDISQLVARIPMQLWVP 1148
            T+LP+IIPPS++G+ IRYLYY+KS ++G +LILENG+   E   D++ L  RIP+Q+WV 
Sbjct: 125  TMLPSIIPPSYKGSNIRYLYYVKSAITGGWLILENGQSRTEPTNDVTDLEVRIPLQIWVN 184

Query: 1149 QKTNGLLYED 1178
            QK++G   +D
Sbjct: 185  QKSSGFPLDD 194


>ref|NP_175432.2| uncharacterized protein [Arabidopsis thaliana]
            gi|20268711|gb|AAM14059.1| unknown protein [Arabidopsis
            thaliana] gi|21689887|gb|AAM67504.1| unknown protein
            [Arabidopsis thaliana] gi|332194396|gb|AEE32517.1|
            uncharacterized protein [Arabidopsis thaliana]
          Length = 532

 Score =  200 bits (509), Expect = 5e-49
 Identities = 105/197 (53%), Positives = 140/197 (71%), Gaps = 6/197 (3%)
 Frame = +3

Query: 606  SRLLSILGIGASD--GDYSKKSDPSISPPLLKLQTDKEVYRPGDQVIITIEIQNP---IT 770
            S   S LGIG+S    D    S   I P L  +QTDK+VYRPGD + +TIE+ N     +
Sbjct: 3    SSRFSFLGIGSSSEVNDSVGVSGSKIKPSL-SVQTDKDVYRPGDSIFVTIEVANSHDNAS 61

Query: 771  DCSLLVETLSFEIKGIEKLESQWFTTQGPGE-SKQKRGEYVFMDSSIPSLVSNQIISSGG 947
            + S+LVE LSFE+KG+EKL+ QWF+TQ P   SK +RGE++F+DSS PSL+SNQI+S G 
Sbjct: 62   NPSILVEKLSFEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFLDSSTPSLISNQILSPGA 121

Query: 948  TKTFVVRTLLPNIIPPSFRGATIRYLYYIKSILSGQYLILENGKFPGESIRDISQLVARI 1127
              T +VR +LP IIPPS++GAT+RYLYYIKS L G+++ LEN +F  +S +D  ++  RI
Sbjct: 122  KMTLMVRAILPQIIPPSYKGATLRYLYYIKSTLCGRWMALENSQFYKDSTQDFIEVETRI 181

Query: 1128 PMQLWVPQKTNGLLYED 1178
            P+Q+WV QK NGLL E+
Sbjct: 182  PLQVWVIQKNNGLLLEE 198


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