BLASTX nr result
ID: Bupleurum21_contig00024646
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00024646
(584 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABY59992.1| polypyrimidine tract-binding protein-like protein... 210 1e-52
ref|XP_002322027.1| predicted protein [Populus trichocarpa] gi|2... 210 2e-52
ref|XP_003602203.1| Polypyrimidine tract-binding protein-like pr... 207 1e-51
ref|XP_002513582.1| polypyrimidine tract binding protein, putati... 207 1e-51
gb|ABK95840.1| unknown [Populus trichocarpa] 204 9e-51
>gb|ABY59992.1| polypyrimidine tract-binding protein-like protein [Robinia
pseudoacacia]
Length = 240
Score = 210 bits (535), Expect = 1e-52
Identities = 107/160 (66%), Positives = 119/160 (74%), Gaps = 5/160 (3%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCIYEGGYCKLHISYSRHTDLSIKVN 405
V KIAMFDKNGG+QALIQYPD+QTAVVAKEALEGHCIY+GG+CK HISYSRHTDLSIKVN
Sbjct: 65 VQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGGFCKPHISYSRHTDLSIKVN 124
Query: 404 NDKSRDYTIPNAPLLSTQPSILGHQPPSMVGPGAPQYNGSMYAPAPVHEGHTMP-PPSSG 228
ND+SRDYTIPN P+++ QPSI G M+GP A QYNGS Y P+ E MP + G
Sbjct: 125 NDRSRDYTIPNTPVVNAQPSISGQHAVPMMGPPAQQYNGSQY--TPISEAALMPQSQAGG 182
Query: 227 WSAGVPAPAVTQSMPGQIHNQHYMPPA----NMAPGYGHP 120
W G P PAV QSMP Q+HN YMPP MAPG P
Sbjct: 183 W--GTPLPAVAQSMPPQMHNNMYMPPGTLPQQMAPGMQFP 220
>ref|XP_002322027.1| predicted protein [Populus trichocarpa] gi|222869023|gb|EEF06154.1|
predicted protein [Populus trichocarpa]
Length = 447
Score = 210 bits (534), Expect = 2e-52
Identities = 102/157 (64%), Positives = 119/157 (75%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCIYEGGYCKLHISYSRHTDLSIKVN 405
V KIAMFDKN G+QALIQYPDVQTAVVAKEALEGHCIY+GG+CKLH+SYSRH DLSIKVN
Sbjct: 272 VQKIAMFDKNSGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHLSYSRHNDLSIKVN 331
Query: 404 NDKSRDYTIPNAPLLSTQPSILGHQPPSMVGPGAPQYNGSMYAPAPVHEGHTMPPPSSGW 225
ND+SRDYTIPN +++ QPSILG QP + GP + Y G+ +AP H +P PSSGW
Sbjct: 332 NDRSRDYTIPNNVMVNPQPSILGQQPVATHGPPSHLYTGAQFAPTTEHS--MIPQPSSGW 389
Query: 224 SAGVPAPAVTQSMPGQIHNQHYMPPANMAPGYGHPMM 114
+ G P V SMPGQ++N Y+PP M P GH MM
Sbjct: 390 ATGF--PPVPNSMPGQMNNNPYLPPGTMPPQMGHGMM 424
Score = 69.7 bits (169), Expect = 3e-10
Identities = 39/80 (48%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCIYEG------GYCKLHISYSRHTD 423
V KI F+K QAL+Q+ DV+TA AK AL+G I G C L I+YS HTD
Sbjct: 140 VHKITTFEKMDRFQALVQFSDVETASSAKNALDGRNIPSYLLPEHLGPCTLRIAYSGHTD 199
Query: 422 LSIKVNNDKSRDYTIPNAPL 363
LS+K + +SRDYT PN P+
Sbjct: 200 LSVKFQSHRSRDYTNPNLPV 219
>ref|XP_003602203.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula] gi|355491251|gb|AES72454.1| Polypyrimidine
tract-binding protein-like protein [Medicago truncatula]
Length = 828
Score = 207 bits (527), Expect = 1e-51
Identities = 104/157 (66%), Positives = 118/157 (75%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCIYEGGYCKLHISYSRHTDLSIKVN 405
+ KIAMFDKNGG+QALIQYPD QTAVVAKEALEGHCIY+GG+CKLH+SYSRHTDLSIKVN
Sbjct: 596 IQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVN 655
Query: 404 NDKSRDYTIPNAPLLSTQPSILGHQPPSMVGPGAPQYNGSMYAPAPVHEGHTMPPPSSGW 225
ND+SRDYTIP P+++TQPSILG QP M P A QYNGS Y P+ + +P +GW
Sbjct: 656 NDRSRDYTIPMIPVVNTQPSILG-QPVPMTVPPAQQYNGSQY--TPISDPAMIPQSQAGW 712
Query: 224 SAGVPAPAVTQSMPGQIHNQHYMPPANMAPGYGHPMM 114
G P V QSMP Q+HN YMP NM PG G M
Sbjct: 713 --GTTLPTVAQSMPLQMHNNIYMPAGNMPPGNGPMQM 747
Score = 68.9 bits (167), Expect = 6e-10
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCI------YEGGYCKLHISYSRHTD 423
V KI F+K G QAL+Q+ D +TA AK+AL+G I G C L I+YS H+D
Sbjct: 464 VHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLSEHVGPCTLKITYSGHSD 523
Query: 422 LSIKVNNDKSRDYTIPNAPL 363
L++K + +SRDYT P P+
Sbjct: 524 LTVKFQSHRSRDYTNPYLPV 543
>ref|XP_002513582.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223547490|gb|EEF48985.1| polypyrimidine tract binding
protein, putative [Ricinus communis]
Length = 447
Score = 207 bits (526), Expect = 1e-51
Identities = 104/157 (66%), Positives = 119/157 (75%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCIYEGGYCKLHISYSRHTDLSIKVN 405
V KIAMFDKNGG+QALIQYPDVQTAVVAKEALEGHCIY+GG+CKLHISYSRH+DLSIKVN
Sbjct: 272 VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHSDLSIKVN 331
Query: 404 NDKSRDYTIPNAPLLSTQPSILGHQPPSMVGPGAPQYNGSMYAPAPVHEGHTMPPPSSGW 225
ND+SRDYTIPN +++ QPSILG QP VGP A Y+G+ +AP H MP PS+GW
Sbjct: 332 NDRSRDYTIPNPAMVNPQPSILGQQPVPTVGPPAHPYSGAQFAPHTEHP--VMPQPSAGW 389
Query: 224 SAGVPAPAVTQSMPGQIHNQHYMPPANMAPGYGHPMM 114
+A VPA SMP Q++N Y P M P G MM
Sbjct: 390 TAAVPAG--PHSMPPQMNNHPYFPSGAMPPQMGPGMM 424
Score = 72.8 bits (177), Expect = 4e-11
Identities = 39/80 (48%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCIYEG------GYCKLHISYSRHTD 423
V KI F+K G QAL+Q+ D +TA AK AL+G I G C L I+YS HTD
Sbjct: 140 VHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPRYLLPEHIGPCTLRITYSAHTD 199
Query: 422 LSIKVNNDKSRDYTIPNAPL 363
LS+K + +SRDYT PN P+
Sbjct: 200 LSVKFQSHRSRDYTNPNLPV 219
>gb|ABK95840.1| unknown [Populus trichocarpa]
Length = 442
Score = 204 bits (519), Expect = 9e-51
Identities = 101/157 (64%), Positives = 119/157 (75%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCIYEGGYCKLHISYSRHTDLSIKVN 405
V KIAMFDKNGG+QALIQYPDVQTAVVAKEALEGHCIY+GG+CKLH+SYSRH+DLSIKVN
Sbjct: 272 VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHLSYSRHSDLSIKVN 331
Query: 404 NDKSRDYTIPNAPLLSTQPSILGHQPPSMVGPGAPQYNGSMYAPAPVHEGHTMPPPSSGW 225
ND+SRDYTIPN +++ QPSILG QP + GP A Y G+ + H+ MP PS+GW
Sbjct: 332 NDRSRDYTIPNTVMMNPQPSILGQQPVATHGPPAHTYPGAQH-----HQ--MMPQPSAGW 384
Query: 224 SAGVPAPAVTQSMPGQIHNQHYMPPANMAPGYGHPMM 114
+ G P V SMP Q++N Y+PP M P GH MM
Sbjct: 385 ATG--GPPVPHSMPAQMNNNPYLPPGTMPPQMGHGMM 419
Score = 69.7 bits (169), Expect = 3e-10
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Frame = -1
Query: 584 VLKIAMFDKNGGIQALIQYPDVQTAVVAKEALEGHCIYEG------GYCKLHISYSRHTD 423
V KI F+K G QAL+Q+ D +TA AK AL+G I G C L I+YS HTD
Sbjct: 140 VHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYLLPEHLGPCTLRITYSAHTD 199
Query: 422 LSIKVNNDKSRDYTIPNAPL 363
LS+K + +SRDYT N P+
Sbjct: 200 LSVKFQSHRSRDYTNANLPV 219