BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024482
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|43780...    93   4e-17
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    92   8e-17
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    89   5e-16
gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi]             87   2e-15
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    85   1e-14

>gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
           [Sorghum bicolor]
          Length = 1877

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 53/124 (42%), Positives = 66/124 (53%)
 Frame = -1

Query: 372 PVKMFKGERDDISFTEEDARWVHHPHTDALVVKMKIGTTLVYRVLVDNGSSANVLPYSVF 193
           PV+     R  I+FTEED R   +PHTDALV+   +    V R+LVD+GSSA+++    F
Sbjct: 609 PVRCTDWSRTPITFTEEDLRLESYPHTDALVITTNVAGWGVSRILVDSGSSADIIFAGTF 668

Query: 192 KQMGLVDQELNPPGTHLYAFGGYNIRVKGVVRLPISIGDEPTHTTRITEFTVVDELMTYN 13
            QM L   +L P  + L  FGG  I   G V LP+S G      T    F VVD    YN
Sbjct: 669 DQMKLSRSQLQPSESPLIGFGGKQIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYN 728

Query: 12  AIIG 1
           AI G
Sbjct: 729 AIFG 732


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 91.7 bits (226), Expect = 8e-17
 Identities = 63/190 (33%), Positives = 88/190 (46%), Gaps = 4/190 (2%)
 Frame = -1

Query: 558  KDLRKENEDKRPESSK----GKEPVHMIRMIYGGPHIAGTSRNARHRYIDEARHPPLTNI 391
            +D R +N  K P+  K     + P  +I  I GG  +   S+  R  Y+ +  H      
Sbjct: 667  RDQRGQNAIKAPQVMKIEAIEEVPKRVINAITGGSSLGVESKRQRKAYVRQVNH---VGT 723

Query: 390  FHLNERPVKMFKGERDDISFTEEDARWVHHPHTDALVVKMKIGTTLVYRVLVDNGSSANV 211
             + ++ PV      +  ISF  EDA  +  PH D LVV ++I    V RVL+D GSSA+V
Sbjct: 724  IYQSKPPVY----SKTVISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADV 779

Query: 210  LPYSVFKQMGLVDQELNPPGTHLYAFGGYNIRVKGVVRLPISIGDEPTHTTRITEFTVVD 31
            L Y  FK+M + +  L   G  L  FGG  +   G + L +  G           F VVD
Sbjct: 780  LFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVD 839

Query: 30   ELMTYNAIIG 1
                YNAI+G
Sbjct: 840  MPYQYNAILG 849


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 89.0 bits (219), Expect = 5e-16
 Identities = 62/190 (32%), Positives = 87/190 (45%), Gaps = 4/190 (2%)
 Frame = -1

Query: 558  KDLRKENEDKRPESSK----GKEPVHMIRMIYGGPHIAGTSRNARHRYIDEARHPPLTNI 391
            +D R +N  + P+  K     + P  +I  I GG  +   S+  R  Y+ +  H      
Sbjct: 667  RDQRGQNAIEAPQVMKIEAIEEVPKRVINAITGGSSLGVESKRQRKAYVRQVNH---VGT 723

Query: 390  FHLNERPVKMFKGERDDISFTEEDARWVHHPHTDALVVKMKIGTTLVYRVLVDNGSSANV 211
             + +  PV      +  ISF  EDA  +  PH D LVV ++I    V RVL+D GSSA+V
Sbjct: 724  SYQSNPPVY----SKTVISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADV 779

Query: 210  LPYSVFKQMGLVDQELNPPGTHLYAFGGYNIRVKGVVRLPISIGDEPTHTTRITEFTVVD 31
            L Y  FK+M + +  L   G  L  FGG  +   G + L +  G           F VVD
Sbjct: 780  LFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVD 839

Query: 30   ELMTYNAIIG 1
                YNAI+G
Sbjct: 840  MPYQYNAILG 849


>gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi]
          Length = 1902

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 48/126 (38%), Positives = 65/126 (51%)
 Frame = -1

Query: 378  ERPVKMFKGERDDISFTEEDARWVHHPHTDALVVKMKIGTTLVYRVLVDNGSSANVLPYS 199
            E P K  +     I+F   D +   +PHTDA+V++  +    V ++LVD GSSA++L  S
Sbjct: 632  EGPHKFGRWSHIPITFDSRDMKLRDYPHTDAMVIETNLAGWTVTKILVDTGSSADILFAS 691

Query: 198  VFKQMGLVDQELNPPGTHLYAFGGYNIRVKGVVRLPISIGDEPTHTTRITEFTVVDELMT 19
             F  M L    L P    LY FGG  +R  G + LP++ GD+    T    F VVD    
Sbjct: 692  TFDSMKLDRNLLQPADNPLYGFGGQQVRAVGKISLPVTFGDQINCRTEHITFDVVDMFYP 751

Query: 18   YNAIIG 1
            YNAI G
Sbjct: 752  YNAIFG 757


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 55/167 (32%), Positives = 76/167 (45%)
 Frame = -1

Query: 501 PVHMIRMIYGGPHIAGTSRNARHRYIDEARHPPLTNIFHLNERPVKMFKGERDDISFTEE 322
           P  +I  I GG  +   S+  R  Y+ +  H       + +  P          ISF  E
Sbjct: 207 PKRVINAITGGSSLGVESKRQRKAYVRQIHH---VGTSYQSVPPAY----SNTVISFGPE 259

Query: 321 DARWVHHPHTDALVVKMKIGTTLVYRVLVDNGSSANVLPYSVFKQMGLVDQELNPPGTHL 142
           DA  +  PH D LV+ ++I    V RVLVD GSSA+VL Y  FK+M + +  L   G  L
Sbjct: 260 DAEGILFPHQDPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPL 319

Query: 141 YAFGGYNIRVKGVVRLPISIGDEPTHTTRITEFTVVDELMTYNAIIG 1
             FGG+ +   G + L +  G           F VVD    YNA++G
Sbjct: 320 QGFGGHQVHTIGKISLQVVFGGGENKRREEVVFDVVDMPYQYNAVLG 366