BLASTX nr result
ID: Bupleurum21_contig00024382
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00024382
(1271 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-a... 443 e-122
ref|XP_002308876.1| chromatin remodeling complex subunit [Populu... 403 e-110
ref|XP_002535194.1| helicase, putative [Ricinus communis] gi|223... 403 e-110
ref|XP_002871139.1| SNF2 domain-containing protein [Arabidopsis ... 385 e-104
ref|NP_196132.2| DNA/RNA helicase [Arabidopsis thaliana] gi|2026... 381 e-103
>ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1-like
[Vitis vinifera]
Length = 874
Score = 443 bits (1139), Expect = e-122
Identities = 236/431 (54%), Positives = 298/431 (69%), Gaps = 8/431 (1%)
Frame = -1
Query: 1271 NRYDRYAIQVINIKCMQVGYVERSVSTVLGPLLDDNLISIEGIVPYNQGRRGNVNRCKIP 1092
N YDR AI+V+N +QVG+++RS + VL PL+D NL+++EGIVP G + NR +IP
Sbjct: 74 NPYDRNAIKVLNTTTIQVGHIDRSAAAVLAPLMDANLVTVEGIVPNTPG---SGNRYRIP 130
Query: 1091 FQIHVFANAHDVEALHFAIVRGGLQLIKSDNDCVGLSELVRQNE---DEEGKRLNDIFKV 921
Q+H+FA + AI RGGLQLI + LSE V E D+E K L++IFK+
Sbjct: 131 CQVHIFAQIEWFPRVRSAISRGGLQLISDSDPSFTLSEAVIVKEKKCDKEFKSLDEIFKL 190
Query: 920 ----VDEVGPMEVMEAPKEAIKSELFLHQKEALAWLVRRENSDELPPFWVERSGGVFVNE 753
V++ G +E ME PK+ IKSELFLHQKEAL WLV RENS ELPPFW E+ G +VN
Sbjct: 191 AIENVNKQGALEAMEPPKDVIKSELFLHQKEALGWLVHRENSCELPPFW-EKQNGSYVNV 249
Query: 752 IMGFETNNRPQALHGGIFADDMGLGKTFTLLCLIALDKFSPGTNSLVDNGDFHLGSDVAD 573
+ ++TN RP+ L GGIFADDMGLGKT TLLCLIA DK S + V+ + +
Sbjct: 250 LTNYQTNKRPEPLRGGIFADDMGLGKTLTLLCLIAFDKCSSDLSYSVNRDNI----EKLG 305
Query: 572 EEGEEFVVYGGKNPKKGKATTIVNNIKKRQKVGSNLKDYGLGSNSFAAVALRTTLVVCPP 393
EE EE +V GK +KG+ + + ++K++K D L NS V +TTL+VCPP
Sbjct: 306 EEDEELIVSSGKKSRKGRVSRKASGLRKKRKTDDTPSDDMLKGNS---VVSKTTLIVCPP 362
Query: 392 AVFSTWITQLGEHTRPGKLNVYMYYGDRTDDPMELTKYDLVLTTYTTLGNEVSLD-SPVF 216
+VFSTW+TQL EHT P +L VYMYYG+RT + EL KYD+VLTTY+TL E + SPV
Sbjct: 363 SVFSTWVTQLLEHTTPKRLKVYMYYGNRTQEAEELQKYDIVLTTYSTLATEEAWSGSPVK 422
Query: 215 KVDWWRVILDEAHMIKNANALQTRAVHKLNAKKRWVVTGTPIQNGTVDLFSLMAFLRYEP 36
K++WWRVILDEAHMIKN NA Q++AV L AK+RWVVTGTPIQNGT DLFSLMAFLR+EP
Sbjct: 423 KIEWWRVILDEAHMIKNVNAQQSQAVTNLRAKRRWVVTGTPIQNGTFDLFSLMAFLRFEP 482
Query: 35 FSSKSYWTTLI 3
FS KSYW +L+
Sbjct: 483 FSIKSYWQSLV 493
>ref|XP_002308876.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222854852|gb|EEE92399.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 799
Score = 403 bits (1036), Expect = e-110
Identities = 227/431 (52%), Positives = 284/431 (65%), Gaps = 8/431 (1%)
Frame = -1
Query: 1271 NRYDRYAIQVINIKCMQVGYVERSVSTVLGPLLDDNLISIEGIVPYNQGRRGNVNRCKIP 1092
N +D+ A++V+N +C+QVG++ERSV+ VL PL+D N+I++EGIVP + R N+ KIP
Sbjct: 41 NPFDQNALKVLNTRCLQVGHIERSVAAVLSPLIDSNMINVEGIVPNS---RSGGNKYKIP 97
Query: 1091 FQIHVFANAHDVEALHFAIVRGGLQLIKSDNDCVGLSE--LVRQNEDEEG-KRLNDIFKV 921
Q+HVFA D E++ AI RGGL L+ GLSE +V++ + G K L++IFK+
Sbjct: 98 CQVHVFARVEDFESVKTAISRGGLVLLSQMEVGFGLSEAMVVKEKNKKSGLKSLDEIFKL 157
Query: 920 VDE----VGPMEVMEAPKEAIKSELFLHQKEALAWLVRRENSDELPPFWVERSGGVFVNE 753
VDE G + +E PKE IKS+LF HQKE L WLV RENS ELPPFW E+ G FVN
Sbjct: 158 VDENVNKKGKLGALEPPKEVIKSQLFEHQKEGLWWLVNRENSGELPPFWEEKDGE-FVNV 216
Query: 752 IMGFETNNRPQALHGGIFADDMGLGKTFTLLCLIALDKFSPGTNSLVDNGDFHLGSDVAD 573
+ + TN RP+ L GGIFADDMGLGKT LL LIA DK GT + N D +VA+
Sbjct: 217 LTNYHTNRRPEPLRGGIFADDMGLGKTLALLSLIAFDKCGGGTGVVGGNKD-----NVAE 271
Query: 572 EEGEEFVVYGGKNPKKGKATTIVNNIKKRQKVGSNLKDYGLGSNSFAAVALRTTLVVCPP 393
E +G + +D TTL+VCPP
Sbjct: 272 E------------------------------IGGDDED--------------TTLIVCPP 287
Query: 392 AVFSTWITQLGEHTRPGKLNVYMYYGDRTDDPMELTKYDLVLTTYTTLGNEVSL-DSPVF 216
AVFSTWITQL EHT+ G L VYMYYG+RT + EL K+D+VLTTY+TL E DSPV
Sbjct: 288 AVFSTWITQLEEHTQRGSLGVYMYYGERTREVEELKKHDIVLTTYSTLAAEDPWEDSPVK 347
Query: 215 KVDWWRVILDEAHMIKNANALQTRAVHKLNAKKRWVVTGTPIQNGTVDLFSLMAFLRYEP 36
K+DW RVILDEAH+IKNAN+ Q+RAV KLNAK+RWVVTGTPIQNG++DLFSLMAFLR+EP
Sbjct: 348 KIDWCRVILDEAHVIKNANSQQSRAVTKLNAKRRWVVTGTPIQNGSLDLFSLMAFLRFEP 407
Query: 35 FSSKSYWTTLI 3
FS KSYW +L+
Sbjct: 408 FSIKSYWQSLL 418
>ref|XP_002535194.1| helicase, putative [Ricinus communis] gi|223523786|gb|EEF27189.1|
helicase, putative [Ricinus communis]
Length = 518
Score = 403 bits (1035), Expect = e-110
Identities = 223/438 (50%), Positives = 294/438 (67%), Gaps = 15/438 (3%)
Frame = -1
Query: 1271 NRYDRYAIQVINIKCMQVGYVERSVSTVLGPLLDDNLISIEGIVPYNQGRRGNVNRCKIP 1092
N +D+ AI+V+N + +QVG++ERSV++VL PL+D I++EGIV + R N N+ KIP
Sbjct: 65 NPHDQNAIKVLNARSLQVGHIERSVASVLSPLIDSQKITVEGIVANS---RSNSNKFKIP 121
Query: 1091 FQIHVFANAHDVEALHFAIVRGGLQLIKSDNDCVGLSE--LVRQNEDEEG-KRLNDIFKV 921
QIH+FA D E + I RGGL LI + GLSE +V++ + G K +++IFK+
Sbjct: 122 CQIHIFARFEDFERVKSEITRGGLVLITEIDASFGLSEAMVVKEKNKKSGFKSVDEIFKL 181
Query: 920 VDE----VGPMEVMEAPKEAIKSELFLHQKEALAWLVRRENSDELPPFWVERSGGVFVNE 753
VD+ G + +E PKE IKSELFLHQKE L WL+ RENS+ELPPFW E+ G + N
Sbjct: 182 VDDNVNKKGKLGTLEPPKEVIKSELFLHQKEGLWWLMNRENSNELPPFWEEKDGK-YGNV 240
Query: 752 IMGFETNNRPQALHGGIFADDMGLGKTFTLLCLIALDKFSPGTNSLVDNGDFHLGSDVAD 573
+ + T+NRP+ L GGI ADDMGLGKT TLL LIA DK N ++G +
Sbjct: 241 LTNYHTDNRPEPLRGGILADDMGLGKTLTLLSLIAFDKVDSSLN-------INVGEQMCK 293
Query: 572 EEGEEFVVYGGKNPKKGKATTIVNNIKKRQKV-----GSNLKDYGLG--SNSFAAVALRT 414
+ EE ++ K+G+ + V +KR+K+ GSN K + S + +
Sbjct: 294 VD-EEVSLFSDTKGKRGRVSKKVTAGRKRRKIDGTLLGSNAKGKAVSIIDKSSSVSGAKP 352
Query: 413 TLVVCPPAVFSTWITQLGEHTRPGKLNVYMYYGDRTDDPMELTKYDLVLTTYTTLGNEVS 234
TL+VCPP VFSTWITQL +HT G L VY+Y+G+RT + EL + D+VLTTY+TL +E S
Sbjct: 353 TLIVCPPVVFSTWITQLEDHTVGGSLKVYIYHGERTKEAEELKRQDIVLTTYSTLASEDS 412
Query: 233 L-DSPVFKVDWWRVILDEAHMIKNANALQTRAVHKLNAKKRWVVTGTPIQNGTVDLFSLM 57
DSPV V+WWRVILDEAH+IKNANA Q+RAV LNAK+RWVVTGTPIQNG+ DLFSLM
Sbjct: 413 WEDSPVKMVEWWRVILDEAHVIKNANAQQSRAVTNLNAKRRWVVTGTPIQNGSFDLFSLM 472
Query: 56 AFLRYEPFSSKSYWTTLI 3
AFLR+EPFS K+YW +L+
Sbjct: 473 AFLRFEPFSIKNYWQSLV 490
>ref|XP_002871139.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297316976|gb|EFH47398.1| SNF2 domain-containing
protein [Arabidopsis lyrata subsp. lyrata]
Length = 861
Score = 385 bits (988), Expect = e-104
Identities = 217/432 (50%), Positives = 277/432 (64%), Gaps = 9/432 (2%)
Frame = -1
Query: 1271 NRYDRYAIQVINIKCMQVGYVERSVSTVLGPLLDDNLISIEGIVPYNQGRRGNVNRCKIP 1092
N YD AI+V+N + QVG++ER+V+ VL PL+D + I +EGIVP R N NR KIP
Sbjct: 70 NPYDNNAIRVLNTRSEQVGHIERTVAAVLAPLIDSHTIIVEGIVP---NTRSNSNRFKIP 126
Query: 1091 FQIHVFANAHDVEALHFAIVRGGLQLIKSDNDCVGLSELV---RQNEDEEGKRLNDIFKV 921
QIHVFA + I RGGL LI + GLSE V Q + + K ++ IFK+
Sbjct: 127 CQIHVFAKLEASSTVKSTISRGGLVLISDSDTAFGLSEAVVVKEQMGNGDKKSVDKIFKL 186
Query: 920 VDE----VGPMEVMEAPKEAIKSELFLHQKEALAWLVRRENSDELPPFWVERSGGVFVNE 753
VD G + +E P+E IKSELF HQKE L WL+ RE S ELPPFW E+ G F+N
Sbjct: 187 VDRNVKLKGKLVAVEPPREVIKSELFAHQKEGLGWLLYREKSGELPPFWEEKDGE-FLNT 245
Query: 752 IMGFETNNRPQALHGGIFADDMGLGKTFTLLCLIALDKFSPGTNSLVDNGDFHLGSDVAD 573
+ + ++ RP+ L GG+FADDMGLGKT TLL LIA D++ + S + D +
Sbjct: 246 LTNYRSDKRPEPLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTKEPLDVEGDKIE 305
Query: 572 EEGEEFVVYGGKNPKKGKATTIVNNIKKRQKVGSNLKDYGLGSNSFAAVALRTTLVVCPP 393
++G+ K+G+ + + +K+ K D +G N V+ +TTL+VCPP
Sbjct: 306 KKGK----------KRGRGKSSESRTRKKLK-----PDDVVGMN----VSQKTTLIVCPP 346
Query: 392 AVFSTWITQLGEHTRPGKLNVYMYYG-DRTDDPMELTKYDLVLTTYTTLGNEVSL-DSPV 219
+V S WITQL EHT G L VYMY+G +RTDD EL KYDLVLTTY+TL E S DSPV
Sbjct: 347 SVISAWITQLEEHTVQGSLKVYMYHGGERTDDVNELMKYDLVLTTYSTLAVEESWEDSPV 406
Query: 218 FKVDWWRVILDEAHMIKNANALQTRAVHKLNAKKRWVVTGTPIQNGTVDLFSLMAFLRYE 39
K++W R+ILDEAH IKNANA Q+R V KL A +RW VTGTPIQNG+ DL+SLMAFLR+E
Sbjct: 407 KKMEWLRIILDEAHTIKNANAQQSRVVSKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFE 466
Query: 38 PFSSKSYWTTLI 3
PFS KSYW +LI
Sbjct: 467 PFSIKSYWQSLI 478
>ref|NP_196132.2| DNA/RNA helicase [Arabidopsis thaliana] gi|20260624|gb|AAM13210.1|
helicase-like transcription factor-like protein
[Arabidopsis thaliana] gi|31711770|gb|AAP68241.1|
At5g05130 [Arabidopsis thaliana]
gi|332003449|gb|AED90832.1| DNA/RNA helicase [Arabidopsis
thaliana]
Length = 862
Score = 381 bits (978), Expect = e-103
Identities = 218/432 (50%), Positives = 277/432 (64%), Gaps = 9/432 (2%)
Frame = -1
Query: 1271 NRYDRYAIQVINIKCMQVGYVERSVSTVLGPLLDDNLISIEGIVPYNQGRRGNVNRCKIP 1092
N YD AI+V+N + QVG++ER+V+ VL P++D + I +EGIVP R N NR +IP
Sbjct: 71 NVYDNNAIRVLNTRSEQVGHIERTVAAVLAPMIDSHTIVVEGIVP---NTRSNSNRYRIP 127
Query: 1091 FQIHVFANAHDVEALHFAIVRGGLQLIKSDNDCVGLSELV---RQNEDEEGKRLNDIFKV 921
QIHVFA + I RGGL LI + GLSE V Q + + + ++ IFK+
Sbjct: 128 CQIHVFAKLEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDKIFKL 187
Query: 920 VDE----VGPMEVMEAPKEAIKSELFLHQKEALAWLVRRENSDELPPFWVERSGGVFVNE 753
VDE +G + E P+E IKSELF HQKE L WL+ RE S ELPPFW E+ G F+N
Sbjct: 188 VDENVKLMGKLVAAEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGE-FLNT 246
Query: 752 IMGFETNNRPQALHGGIFADDMGLGKTFTLLCLIALDKFSPGTNSLVDNGDFHLGSDVAD 573
+ + ++ RP L GG+FADDMGLGKT TLL LIA D++ + S + D
Sbjct: 247 LTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTE-------EPLD 299
Query: 572 EEGEEFVVYGGKNPKKGKATTIVNNIKKRQKVGSNLKDYGLGSNSFAAVALRTTLVVCPP 393
EG++ + GK +GK++ V K + D +G N V+ +TTL+VCPP
Sbjct: 300 GEGDK-IEKKGKKRGRGKSSESVTRKKLKT-------DDVVGMN----VSQKTTLIVCPP 347
Query: 392 AVFSTWITQLGEHTRPGKLNVYMYYG-DRTDDPMELTKYDLVLTTYTTLGNEVSL-DSPV 219
+V S WITQL EHT PG L VYMY+G +RTDD EL KYD+VLTTY TL E S DSPV
Sbjct: 348 SVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLAVEESWEDSPV 407
Query: 218 FKVDWWRVILDEAHMIKNANALQTRAVHKLNAKKRWVVTGTPIQNGTVDLFSLMAFLRYE 39
K++W R+ILDEAH IKNANA Q+R V KL A +RW VTGTPIQNG+ DL+SLMAFLR+E
Sbjct: 408 KKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFE 467
Query: 38 PFSSKSYWTTLI 3
PFS KSYW +LI
Sbjct: 468 PFSIKSYWQSLI 479