BLASTX nr result

ID: Bupleurum21_contig00024187 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024187
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG37663.1| CCHC-type integrase [Populus trichocarpa]              160   8e-38
ref|XP_002336066.1| predicted protein [Populus trichocarpa] gi|2...   160   1e-37
ref|XP_002304031.1| predicted protein [Populus trichocarpa] gi|2...   159   2e-37
ref|XP_002334088.1| predicted protein [Populus trichocarpa] gi|2...   155   4e-36
ref|XP_002297670.1| predicted protein [Populus trichocarpa] gi|2...   150   8e-35

>gb|ABG37663.1| CCHC-type integrase [Populus trichocarpa]
          Length = 2037

 Score =  160 bits (406), Expect = 8e-38
 Identities = 82/139 (58%), Positives = 103/139 (74%), Gaps = 5/139 (3%)
 Frame = +2

Query: 2   DFAFGFQQMQGDKDQFLLSIWYNNIPDKTIVWYA-----NDGKTVLKGSKVELTSDRGLV 166
           +FAFGF+Q++ +KD FLLSIWY  IP+KT+VWYA      D   V +GSK+ELT DRGL+
Sbjct: 81  EFAFGFRQLE-NKDYFLLSIWYEKIPEKTVVWYAIGEDPTDDPAVPRGSKLELTDDRGLL 139

Query: 167 LTDFEGNKLWSSGPIQTLNEVSSATLTDTGNLMVFNRDSTKLWDSFSNPTDTLLPTQTME 346
           L D +GN++WSSG I     VSS  + DTGN ++ NR+S +LW+SF+NPTDTLLPTQ ME
Sbjct: 140 LADPQGNQIWSSG-IPPGAAVSSGVMNDTGNFVLQNRNSFRLWESFNNPTDTLLPTQIME 198

Query: 347 TNGTLYSRLTETNFSKGRF 403
             G + SR TETNFS GRF
Sbjct: 199 VGGVVSSRRTETNFSLGRF 217


>ref|XP_002336066.1| predicted protein [Populus trichocarpa] gi|222869874|gb|EEF07005.1|
           predicted protein [Populus trichocarpa]
          Length = 691

 Score =  160 bits (404), Expect = 1e-37
 Identities = 82/134 (61%), Positives = 97/134 (72%)
 Frame = +2

Query: 2   DFAFGFQQMQGDKDQFLLSIWYNNIPDKTIVWYANDGKTVLKGSKVELTSDRGLVLTDFE 181
           +FAFGFQ ++  KD FLLSIWY  IP+KTIVWYAN      + SKVEL  D GLVLTD +
Sbjct: 25  EFAFGFQPLEY-KDHFLLSIWYAKIPEKTIVWYANGDNPAPRESKVELRGDSGLVLTDPQ 83

Query: 182 GNKLWSSGPIQTLNEVSSATLTDTGNLMVFNRDSTKLWDSFSNPTDTLLPTQTMETNGTL 361
           GN +WSSG +  L  VSS  + DTGN ++ N +S +LW+SFSNPTDTLLPTQ ME  G +
Sbjct: 84  GNLIWSSGSL--LGTVSSGVMNDTGNFVLQNSNSFRLWESFSNPTDTLLPTQIMEVGGVV 141

Query: 362 YSRLTETNFSKGRF 403
            SR TETNFS GRF
Sbjct: 142 SSRRTETNFSLGRF 155


>ref|XP_002304031.1| predicted protein [Populus trichocarpa] gi|222841463|gb|EEE79010.1|
           predicted protein [Populus trichocarpa]
          Length = 699

 Score =  159 bits (402), Expect = 2e-37
 Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 5/139 (3%)
 Frame = +2

Query: 2   DFAFGFQQMQGDKDQFLLSIWYNNIPDKTIVWYA-----NDGKTVLKGSKVELTSDRGLV 166
           +FAFGF+Q++ +KD FLLSIWY  IP+KT+VWYA      D   V +GSKVELT DRGL+
Sbjct: 31  EFAFGFRQLE-NKDYFLLSIWYEKIPEKTVVWYAIGEDPTDDPAVPRGSKVELTDDRGLL 89

Query: 167 LTDFEGNKLWSSGPIQTLNEVSSATLTDTGNLMVFNRDSTKLWDSFSNPTDTLLPTQTME 346
           L D +GN +W+S  +  L  VSS  + DTGN ++ NR+S +LW+SF+NPTDTLLPTQ ME
Sbjct: 90  LADPQGNLIWTSRIL--LGAVSSGVMNDTGNFVLQNRNSERLWESFNNPTDTLLPTQIME 147

Query: 347 TNGTLYSRLTETNFSKGRF 403
             G + SR TETNFS GRF
Sbjct: 148 AGGVVSSRRTETNFSLGRF 166


>ref|XP_002334088.1| predicted protein [Populus trichocarpa] gi|222839594|gb|EEE77931.1|
           predicted protein [Populus trichocarpa]
          Length = 799

 Score =  155 bits (391), Expect = 4e-36
 Identities = 76/134 (56%), Positives = 97/134 (72%)
 Frame = +2

Query: 2   DFAFGFQQMQGDKDQFLLSIWYNNIPDKTIVWYANDGKTVLKGSKVELTSDRGLVLTDFE 181
           DFAFGF Q+ G+KD FLL+IWY+ IPDKTIVWYAN  K    GSK  LT++RG+ LTD +
Sbjct: 48  DFAFGFYQLYGNKDLFLLAIWYDKIPDKTIVWYANGDKPAPTGSKAVLTANRGISLTDPQ 107

Query: 182 GNKLWSSGPIQTLNEVSSATLTDTGNLMVFNRDSTKLWDSFSNPTDTLLPTQTMETNGTL 361
           G +LW S  I  + +V+   +TDTGN ++ +R S KLW+SF NP DTLLP+Q ++   TL
Sbjct: 108 GRELWRSETI--IGDVAYGAMTDTGNFVLRDRVSDKLWESFKNPADTLLPSQVLDRGMTL 165

Query: 362 YSRLTETNFSKGRF 403
            SR +ETNFS GRF
Sbjct: 166 SSRQSETNFSMGRF 179


>ref|XP_002297670.1| predicted protein [Populus trichocarpa] gi|222844928|gb|EEE82475.1|
           predicted protein [Populus trichocarpa]
          Length = 208

 Score =  150 bits (380), Expect = 8e-35
 Identities = 76/136 (55%), Positives = 95/136 (69%), Gaps = 2/136 (1%)
 Frame = +2

Query: 2   DFAFGFQQMQGDKDQFLLSIWYNNIPDKTIVWYANDGKTVLKGSKVELTSDRGLVLTDFE 181
           DFAFGF+Q+  + D FLL+IWY  IPD+T+VWYAN G    +GSKVELT+DRGLVL D  
Sbjct: 25  DFAFGFRQISENDDFFLLAIWYYKIPDRTVVWYANGGNPAPRGSKVELTADRGLVLKDPR 84

Query: 182 GNKLWSSGPIQTLNEVSSATLTDTGNLMVFN--RDSTKLWDSFSNPTDTLLPTQTMETNG 355
            +++W SG    +  V+   + DTGN ++FN    S  +W SFS P DTLLPTQTME  G
Sbjct: 85  DSEIWRSG--FNVGTVTHGVMNDTGNFVLFNVSSGSQAVWQSFSYPNDTLLPTQTMEIEG 142

Query: 356 TLYSRLTETNFSKGRF 403
            L SR +ETNFS+GRF
Sbjct: 143 MLSSRKSETNFSQGRF 158


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