BLASTX nr result

ID: Bupleurum21_contig00024022 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024022
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN59909.1| hypothetical protein VITISV_037479 [Vitis vinifera]    58   2e-14
gb|ABK22750.1| unknown [Picea sitchensis] gi|224286467|gb|ACN409...    56   3e-14
gb|ACF85395.1| unknown [Zea mays]                                      52   8e-12
ref|XP_002302198.1| predicted protein [Populus trichocarpa] gi|2...    72   6e-11
ref|XP_002300944.1| predicted protein [Populus trichocarpa] gi|2...    72   6e-11

>emb|CAN59909.1| hypothetical protein VITISV_037479 [Vitis vinifera]
          Length = 249

 Score = 57.8 bits (138), Expect(2) = 2e-14
 Identities = 27/37 (72%), Positives = 31/37 (83%)
 Frame = +2

Query: 179 FSVIMYGPLLSVMRMVLKTRSVEYMSFFLSLCSFLCG 289
           FS+IMY   LS+MRMV+KT+SVEYM FFLSL  FLCG
Sbjct: 141 FSIIMYASPLSIMRMVIKTKSVEYMPFFLSLFVFLCG 177



 Score = 46.2 bits (108), Expect(2) = 2e-14
 Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +1

Query: 67  EISGLMI-VLTIFGTVALVSMFALHHQNRNVFCGFAAAIF 183
           +I GL I VL++FG V  VS+FALH   R +FCG AA IF
Sbjct: 102 KILGLFIFVLSVFGVVVFVSLFALHGHGRKLFCGLAATIF 141


>gb|ABK22750.1| unknown [Picea sitchensis] gi|224286467|gb|ACN40940.1| unknown
           [Picea sitchensis]
          Length = 260

 Score = 56.2 bits (134), Expect(2) = 3e-14
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = +2

Query: 179 FSVIMYGPLLSVMRMVLKTRSVEYMSFFLSLCSFLCG 289
           FS+ MY   LS+MR V+KT+SV+YM FFLSLC FLCG
Sbjct: 138 FSICMYASPLSIMRTVIKTKSVKYMPFFLSLCVFLCG 174



 Score = 47.0 bits (110), Expect(2) = 3e-14
 Identities = 23/35 (65%), Positives = 26/35 (74%)
 Frame = +1

Query: 79  LMIVLTIFGTVALVSMFALHHQNRNVFCGFAAAIF 183
           L+IVL  F  VALVS+ ALH   R +FCGFAAAIF
Sbjct: 104 LVIVLKFFALVALVSLLALHGHARKLFCGFAAAIF 138


>gb|ACF85395.1| unknown [Zea mays]
          Length = 167

 Score = 51.6 bits (122), Expect(2) = 8e-12
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +2

Query: 179 FSVIMYGPLLSVMRMVLKTRSVEYMSFFLSLCSFLCG 289
           FS+ MY   LS+MR+V+KT+SVE+M F LSL  FLCG
Sbjct: 39  FSICMYASPLSIMRLVIKTKSVEFMPFLLSLAVFLCG 75



 Score = 43.1 bits (100), Expect(2) = 8e-12
 Identities = 22/35 (62%), Positives = 24/35 (68%)
 Frame = +1

Query: 79  LMIVLTIFGTVALVSMFALHHQNRNVFCGFAAAIF 183
           L IV +IF TV LVS+ ALH   R VFCG AA IF
Sbjct: 5   LGIVASIFTTVVLVSLLALHGNARKVFCGLAATIF 39


>ref|XP_002302198.1| predicted protein [Populus trichocarpa] gi|222843924|gb|EEE81471.1|
           predicted protein [Populus trichocarpa]
          Length = 244

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 47/109 (43%), Positives = 62/109 (56%), Gaps = 13/109 (11%)
 Frame = +2

Query: 2   NNILVTVVNGTGAV-----------FAPKKEKMRFLDS*SS--SQYSALLP*SPCLRSII 142
           NNILV+ +NGTGAV           +APKKEK +F+   +   + ++ +   S  +    
Sbjct: 59  NNILVSTINGTGAVIEAVYVLTFIIYAPKKEKAKFIGLLTLVLTTFAGVALVSLVVLHGK 118

Query: 143 RTATFSVVLQLQFSVIMYGPLLSVMRMVLKTRSVEYMSFFLSLCSFLCG 289
               F       FS+IMYG  LS+MR V+KT+SVEYM FFLSL  FLCG
Sbjct: 119 PREIFCGFAAAIFSIIMYGSPLSIMRTVVKTKSVEYMPFFLSLFVFLCG 167


>ref|XP_002300944.1| predicted protein [Populus trichocarpa] gi|222842670|gb|EEE80217.1|
           predicted protein [Populus trichocarpa]
          Length = 250

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 47/109 (43%), Positives = 62/109 (56%), Gaps = 13/109 (11%)
 Frame = +2

Query: 2   NNILVTVVNGTGAV-----------FAPKKEKMRFLDS*SS--SQYSALLP*SPCLRSII 142
           NNILV+ +NGTGAV           +APKKEK +F+   +   + ++ +   S  +    
Sbjct: 65  NNILVSTINGTGAVIEAVYVLTFIIYAPKKEKAKFIGLLTLVLTTFAGVALVSLVVLHGK 124

Query: 143 RTATFSVVLQLQFSVIMYGPLLSVMRMVLKTRSVEYMSFFLSLCSFLCG 289
               F       FS+IMYG  LS+MR V+KT+SVEYM FFLSL  FLCG
Sbjct: 125 PREIFCGFAAAIFSIIMYGSPLSIMRTVVKTKSVEYMPFFLSLFVFLCG 173


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