BLASTX nr result

ID: Bupleurum21_contig00022935 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00022935
         (883 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322506.1| predicted protein [Populus trichocarpa] gi|2...    42   7e-07
ref|XP_002525089.1| conserved hypothetical protein [Ricinus comm...    40   1e-06

>ref|XP_002322506.1| predicted protein [Populus trichocarpa] gi|222867136|gb|EEF04267.1|
           predicted protein [Populus trichocarpa]
          Length = 683

 Score = 42.4 bits (98), Expect(2) = 7e-07
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 32/117 (27%)
 Frame = -2

Query: 318 KEIC*ENYVSLTEITETDAVYLLHPRKVA*ELDPSY------EENGMLEIV--------- 184
           K+I  EN   LTE  E D++ LL   KV  E+D  +      +EN  +E +         
Sbjct: 224 KKIVQENDALLTEKRENDSMELLEACKVTKEMDGDFVYDFTTDENDKVENIVWSYGDSVR 283

Query: 183 -----------DSTYCSMTYKLLCSAWIG-NNDRKVIVFVCAL-----SSSFALTLQ 64
                      D++Y S+TY +L   W+G +N+ K I F C L     + SFA  LQ
Sbjct: 284 AYTLFGDVVYFDTSYRSITYGMLLGVWLGIDNNGKTIFFGCVLLQDETARSFAWALQ 340



 Score = 37.4 bits (85), Expect(2) = 7e-07
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = -3

Query: 410 IVQVLQPEKGTQGRELPFWERNVKRFVLKS*KKFVK 303
           IV+VL+ EKG QG +LPF ER+V+ FV ++ KK V+
Sbjct: 194 IVKVLELEKGIQGGQLPFLERDVRNFV-QNRKKIVQ 228


>ref|XP_002525089.1| conserved hypothetical protein [Ricinus communis]
           gi|223535670|gb|EEF37336.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 656

 Score = 39.7 bits (91), Expect(2) = 1e-06
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 32/119 (26%)
 Frame = -2

Query: 318 KEIC*ENYVSLTEITETDAVYLLHPRKVA*ELDPSY------EENGMLEIV--------- 184
           K+I  E    LTE  E DA+ LL   K A E+D  +      +E+  +E V         
Sbjct: 189 KKIVQETDALLTEKRENDAMELLEACKAAKEVDEEFVYEYTVDEHDKVENVAWSYGDSVC 248

Query: 183 -----------DSTYCSMTYKLLCSAWIG-NNDRKVIVFVCAL-----SSSFALTLQEY 58
                      D++Y S+TY +L  AW+G  N+ K++ F C L       SF   LQ +
Sbjct: 249 AYALFGDVVYFDTSYRSITYGMLFGAWLGIENNGKIVFFGCVLLQDETPHSFVWALQAF 307



 Score = 39.3 bits (90), Expect(2) = 1e-06
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = -3

Query: 410 IVQVLQPEKGTQGRELPFWERNVKRFVLKS*KKFVKRT 297
           IV+VL+ EKG QG +LPF ER+V+ FV ++ KK V+ T
Sbjct: 159 IVKVLELEKGIQGGQLPFLERDVRNFV-QNRKKIVQET 195


Top