BLASTX nr result
ID: Bupleurum21_contig00022803
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00022803
(525 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002525227.1| pentatricopeptide repeat-containing protein,... 229 2e-58
emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera] 210 1e-52
ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258... 208 3e-52
ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|2... 201 4e-50
ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 200 9e-50
>ref|XP_002525227.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535524|gb|EEF37193.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 420
Score = 229 bits (583), Expect = 2e-58
Identities = 108/174 (62%), Positives = 136/174 (78%)
Frame = -2
Query: 524 HLLNSRFRHYQVILNSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEE 345
HLLNSRF+H VI N+++N+YAKCG+ +A +VFD MPV+D+VTWTALI GYSQ+DR ++
Sbjct: 106 HLLNSRFKHDLVIQNTILNMYAKCGNLGEARKVFDQMPVKDVVTWTALITGYSQHDRPKD 165
Query: 344 ALSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVD 165
AL LF ++L +G PNHFTLSSLLKA+ PSD GR +H FC+KYGY NVYVGSAL+D
Sbjct: 166 ALLLFPQMLTLGFRPNHFTLSSLLKASGVSPSDSNGRLLHAFCIKYGYSCNVYVGSALLD 225
Query: 164 MYARCGQINEGQAILYGLPSKNEVSWNALIAGHARRGDGESALQFFKEMQKDDV 3
MYAR G + E I GLPS+NEVSWNALIAG AR+GD E A FF +M ++++
Sbjct: 226 MYARSGHLEEALFIFDGLPSRNEVSWNALIAGCARKGDQELAFSFFSKMLRENI 279
Score = 119 bits (298), Expect = 3e-25
Identities = 58/155 (37%), Positives = 97/155 (62%)
Frame = -2
Query: 482 NSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEEALSLFRKLLMVGLE 303
++++++YA+ G ++AL +FDG+P R+ V+W ALIAG ++ E A S F K+L ++
Sbjct: 221 SALLDMYARSGHLEEALFIFDGLPSRNEVSWNALIAGCARKGDQELAFSFFSKMLRENIQ 280
Query: 302 PNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVDMYARCGQINEGQAI 123
P FT S +L A A S +G+ +H +K G +VG+ L+ MYA+ G I + + +
Sbjct: 281 PTQFTYSIVLSACASIGSLEQGKWVHALLIKSGAKLVDFVGNTLLGMYAKSGSIEDARKV 340
Query: 122 LYGLPSKNEVSWNALIAGHARRGDGESALQFFKEM 18
GL ++ VSWN+++AG+A+ G G AL F++M
Sbjct: 341 FDGLVKRDVVSWNSMLAGYAQHGLGNIALLIFRQM 375
Score = 75.1 bits (183), Expect = 6e-12
Identities = 37/105 (35%), Positives = 62/105 (59%)
Frame = -2
Query: 521 LLNSRFRHYQVILNSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEEA 342
L+ S + + N+++ +YAK GS +DA +VFDG+ RD+V+W +++AGY+Q+ A
Sbjct: 309 LIKSGAKLVDFVGNTLLGMYAKSGSIEDARKVFDGLVKRDVVSWNSMLAGYAQHGLGNIA 368
Query: 341 LSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKY 207
L +FR++L++G+ PN T +L A + EG KY
Sbjct: 369 LLIFRQMLIIGVAPNDITFLCVLTACSHAGLLAEGLHYFNLMRKY 413
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/97 (27%), Positives = 51/97 (52%)
Frame = -2
Query: 308 LEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVDMYARCGQINEGQ 129
LEP+ L K +EG+ +H L + ++ + + +++MYA+CG + E +
Sbjct: 77 LEPDRTLYHILFKKCTLFNKLKEGQLVHAHLLNSRFKHDLVIQNTILNMYAKCGNLGEAR 136
Query: 128 AILYGLPSKNEVSWNALIAGHARRGDGESALQFFKEM 18
+ +P K+ V+W ALI G+++ + AL F +M
Sbjct: 137 KVFDQMPVKDVVTWTALITGYSQHDRPKDALLLFPQM 173
>emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 210 bits (534), Expect = 1e-52
Identities = 101/172 (58%), Positives = 131/172 (76%), Gaps = 1/172 (0%)
Frame = -2
Query: 524 HLLNSRFRHYQVIL-NSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYE 348
HL++S F ++L N +VN+YAKCG DDA ++FD MP +D+VTWTALIAG+SQ +R
Sbjct: 112 HLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPR 171
Query: 347 EALSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALV 168
+AL LF ++L +GL+PNHFTLSSLLKA+ G Q+H FCLKYGY S+VYVGSALV
Sbjct: 172 DALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALV 231
Query: 167 DMYARCGQINEGQAILYGLPSKNEVSWNALIAGHARRGDGESALQFFKEMQK 12
DMYARCG ++ Q G+P+K+EVSWNALI+GHAR+G+GE AL +MQ+
Sbjct: 232 DMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQR 283
Score = 115 bits (289), Expect = 3e-24
Identities = 55/155 (35%), Positives = 91/155 (58%)
Frame = -2
Query: 482 NSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEEALSLFRKLLMVGLE 303
+++V++YA+CG D A FDGMP + V+W ALI+G+++ E AL L K+ +
Sbjct: 228 SALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQ 287
Query: 302 PNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVDMYARCGQINEGQAI 123
P HFT SS+ A A + +G+ +H +K G ++G+ L+DMYA+ G I++ + +
Sbjct: 288 PTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRV 347
Query: 122 LYGLPSKNEVSWNALIAGHARRGDGESALQFFKEM 18
L + VSWN ++ G A+ G G+ L F++M
Sbjct: 348 FDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM 382
Score = 78.6 bits (192), Expect = 5e-13
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Frame = -2
Query: 524 HLLNSRFRHYQVILNSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEE 345
H++ S + I N+++++YAK GS DDA +VFD + D+V+W ++ G +Q+ +E
Sbjct: 315 HMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374
Query: 344 ALSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVD 165
L F ++L +G+EPN + +L A + EG KY + +V VD
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVD 434
Query: 164 MYARCGQINEGQAILYGLPSKNEVS-WNALI 75
+ R G ++ + + +P + + W AL+
Sbjct: 435 LLGRVGLLDRAERFIREMPIEPTAAVWGALL 465
>ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 208 bits (530), Expect = 3e-52
Identities = 100/172 (58%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
Frame = -2
Query: 524 HLLNSRFRHYQVIL-NSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYE 348
HL++S F ++L N +VN+YAKCG DDA ++FD MP +D+VTWTALIAG+SQ +R
Sbjct: 112 HLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPR 171
Query: 347 EALSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALV 168
+AL LF ++L +G +PNHFTLSSLLKA+ G Q+H FCLKYGY S+VYVGSALV
Sbjct: 172 DALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALV 231
Query: 167 DMYARCGQINEGQAILYGLPSKNEVSWNALIAGHARRGDGESALQFFKEMQK 12
DMYARCG ++ Q G+P+K+EVSWNALI+GHAR+G+GE AL +MQ+
Sbjct: 232 DMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQR 283
Score = 117 bits (293), Expect = 1e-24
Identities = 56/155 (36%), Positives = 92/155 (59%)
Frame = -2
Query: 482 NSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEEALSLFRKLLMVGLE 303
+++V++YA+CG D A FDGMP + V+W ALI+G+++ E AL L K+ +
Sbjct: 228 SALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQ 287
Query: 302 PNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVDMYARCGQINEGQAI 123
P HFT SS+L A A + +G+ +H +K G ++G+ L+DMYA+ G I++ + +
Sbjct: 288 PTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRV 347
Query: 122 LYGLPSKNEVSWNALIAGHARRGDGESALQFFKEM 18
L + VSWN ++ G A+ G G+ L F++M
Sbjct: 348 FDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM 382
Score = 78.6 bits (192), Expect = 5e-13
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Frame = -2
Query: 524 HLLNSRFRHYQVILNSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEE 345
H++ S + I N+++++YAK GS DDA +VFD + D+V+W ++ G +Q+ +E
Sbjct: 315 HMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374
Query: 344 ALSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVD 165
L F ++L +G+EPN + +L A + EG KY + +V VD
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVD 434
Query: 164 MYARCGQINEGQAILYGLPSKNEVS-WNALI 75
+ R G ++ + + +P + + W AL+
Sbjct: 435 LLGRVGLLDRAERFIREMPIEPTAAVWGALL 465
>ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|222854713|gb|EEE92260.1|
predicted protein [Populus trichocarpa]
Length = 590
Score = 201 bits (512), Expect = 4e-50
Identities = 101/175 (57%), Positives = 130/175 (74%), Gaps = 2/175 (1%)
Frame = -2
Query: 521 LLNSRFRHYQVILNSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEEA 342
LLNSRFR V+ N+++NLYAKCG A ++FD M RD+VTWTALI GYSQ+DR ++A
Sbjct: 41 LLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDA 100
Query: 341 LSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSD--REGRQIHGFCLKYGYDSNVYVGSALV 168
L L ++L +GL+PN FTL+SLLKAA+G S +GRQ+HG CL+YGYDSNVYV A++
Sbjct: 101 LLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAIL 160
Query: 167 DMYARCGQINEGQAILYGLPSKNEVSWNALIAGHARRGDGESALQFFKEMQKDDV 3
DMYARC + E Q I + SKNEVSWNALIAG+AR+G G+ A F M +++V
Sbjct: 161 DMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENV 215
Score = 120 bits (301), Expect = 1e-25
Identities = 56/154 (36%), Positives = 99/154 (64%)
Frame = -2
Query: 479 SVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEEALSLFRKLLMVGLEP 300
+++++YA+C ++A +FD M ++ V+W ALIAGY++ + ++A LF +L ++P
Sbjct: 158 AILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKP 217
Query: 299 NHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVDMYARCGQINEGQAIL 120
HFT SS+L A A S +G+ +H +K+G +VG+ L+DMYA+ G I + + +
Sbjct: 218 THFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVF 277
Query: 119 YGLPSKNEVSWNALIAGHARRGDGESALQFFKEM 18
L ++ VSWN+++ G+++ G G+ ALQ F+EM
Sbjct: 278 DRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEM 311
Score = 79.7 bits (195), Expect = 2e-13
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Frame = -2
Query: 482 NSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEEALSLFRKLLMVGLE 303
N+++++YAK GS +DA +VFD + RD+V+W +++ GYSQ+ + AL F ++L +
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIA 317
Query: 302 PNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVDMYARCGQINEGQAI 123
PN T +L A + EGR KY + + +VD+ R G ++
Sbjct: 318 PNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQF 377
Query: 122 LYGLPSKNEVS-WNALI 75
+ +P K + W AL+
Sbjct: 378 ISEMPIKPTAAVWGALL 394
>ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 200 bits (509), Expect = 9e-50
Identities = 94/169 (55%), Positives = 125/169 (73%)
Frame = -2
Query: 524 HLLNSRFRHYQVILNSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEE 345
H+ +S F V+LN ++N+YAKCGS ++A +FD MP +D+V+WT LI+GYSQ + E
Sbjct: 130 HIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASE 189
Query: 344 ALSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVD 165
AL+LF K+L +G +PN FTLSSLLKA+ PSD GRQ+H F LKYGYD NV+VGS+L+D
Sbjct: 190 ALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLD 249
Query: 164 MYARCGQINEGQAILYGLPSKNEVSWNALIAGHARRGDGESALQFFKEM 18
MYAR + E + I L +KN VSWNALIAGHAR+G+GE ++ F +M
Sbjct: 250 MYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQM 298
Score = 119 bits (298), Expect = 3e-25
Identities = 58/160 (36%), Positives = 99/160 (61%)
Frame = -2
Query: 482 NSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEEALSLFRKLLMVGLE 303
+S++++YA+ +A +F+ + +++V+W ALIAG+++ E + LF ++L G E
Sbjct: 245 SSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFE 304
Query: 302 PNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVDMYARCGQINEGQAI 123
P HFT SS+L A A S +G+ +H +K G Y+G+ L+DMYA+ G I + + +
Sbjct: 305 PTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKV 363
Query: 122 LYGLPSKNEVSWNALIAGHARRGDGESALQFFKEMQKDDV 3
L ++ VSWN++I+G+A+ G G ALQ F++M K V
Sbjct: 364 FRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKV 403
Score = 85.9 bits (211), Expect = 3e-15
Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Frame = -2
Query: 524 HLLNSRFRHYQVILNSVVNLYAKCGSFDDALQVFDGMPVRDIVTWTALIAGYSQYDRYEE 345
H++ S + I N+++++YAK GS DA +VF + +DIV+W ++I+GY+Q+ E
Sbjct: 331 HVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAE 390
Query: 344 ALSLFRKLLMVGLEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVD 165
AL LF ++L ++PN T S+L A + EG+ K+ ++ V +VD
Sbjct: 391 ALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVD 450
Query: 164 MYARCGQINEGQAILYGLPSKNEVS-WNALI 75
+ R G++NE + +P K + W AL+
Sbjct: 451 LLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481
Score = 62.0 bits (149), Expect = 5e-08
Identities = 29/97 (29%), Positives = 52/97 (53%)
Frame = -2
Query: 308 LEPNHFTLSSLLKAAAGRPSDREGRQIHGFCLKYGYDSNVYVGSALVDMYARCGQINEGQ 129
LEP S +L ++GR IH ++ ++ + + +++MYA+CG + E Q
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160
Query: 128 AILYGLPSKNEVSWNALIAGHARRGDGESALQFFKEM 18
+ +P+K+ VSW LI+G+++ G AL F +M
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM 197