BLASTX nr result
ID: Bupleurum21_contig00022220
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00022220
(370 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI27249.3| unnamed protein product [Vitis vinifera] 181 4e-44
ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containi... 181 4e-44
ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 170 1e-40
ref|XP_002316102.1| predicted protein [Populus trichocarpa] gi|2... 163 2e-38
ref|XP_003607763.1| Pentatricopeptide repeat-containing protein ... 149 3e-34
>emb|CBI27249.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 181 bits (460), Expect = 4e-44
Identities = 84/124 (67%), Positives = 103/124 (83%), Gaps = 1/124 (0%)
Frame = +1
Query: 1 YFINDLYAGVIGFYDC-MRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPD 177
YF+ND Y+ ++ FY+ +R CL E DNVVFSIVLKACSELR+ G+K+HC IVK G+PD
Sbjct: 159 YFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPD 218
Query: 178 SFVLNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRS 357
SFVL GLVD+YAKC E+ SR+VFDEI+DR+V+CWTSMIV YVQNDC ++GL +FNRMR
Sbjct: 219 SFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMRE 278
Query: 358 GLVE 369
GLVE
Sbjct: 279 GLVE 282
Score = 84.7 bits (208), Expect = 7e-15
Identities = 41/98 (41%), Positives = 61/98 (62%)
Frame = +1
Query: 73 DNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPDSFVLNGLVDVYAKCGELVSSRKVFD 252
+ V S VL AC++ + +G+ VHC +K G+ D+ N LVD+YAKC + +R VF+
Sbjct: 385 NTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFE 444
Query: 253 EIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRSGLV 366
+ D+DVI W S+I Y QN A + L +F++MRS V
Sbjct: 445 TVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSV 482
Score = 73.2 bits (178), Expect = 2e-11
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Frame = +1
Query: 1 YFINDLYAGVIGFYDCMRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAG-NPD 177
Y ND + ++ MR L E + ++ AC++L + GK VH +++K+G + +
Sbjct: 260 YVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLN 319
Query: 178 SFVLNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMR 354
SF++ L+D+Y KCG++ + VFDE+ D++ WT+MIV Y Q + L +F R
Sbjct: 320 SFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDER 378
>ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein
VITISV_009460 [Vitis vinifera]
Length = 700
Score = 181 bits (460), Expect = 4e-44
Identities = 84/124 (67%), Positives = 103/124 (83%), Gaps = 1/124 (0%)
Frame = +1
Query: 1 YFINDLYAGVIGFYDC-MRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPD 177
YF+ND Y+ ++ FY+ +R CL E DNVVFSIVLKACSELR+ G+K+HC IVK G+PD
Sbjct: 112 YFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPD 171
Query: 178 SFVLNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRS 357
SFVL GLVD+YAKC E+ SR+VFDEI+DR+V+CWTSMIV YVQNDC ++GL +FNRMR
Sbjct: 172 SFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMRE 231
Query: 358 GLVE 369
GLVE
Sbjct: 232 GLVE 235
Score = 84.7 bits (208), Expect = 7e-15
Identities = 41/98 (41%), Positives = 61/98 (62%)
Frame = +1
Query: 73 DNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPDSFVLNGLVDVYAKCGELVSSRKVFD 252
+ V S VL AC++ + +G+ VHC +K G+ D+ N LVD+YAKC + +R VF+
Sbjct: 338 NTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFE 397
Query: 253 EIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRSGLV 366
+ D+DVI W S+I Y QN A + L +F++MRS V
Sbjct: 398 TVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSV 435
Score = 73.2 bits (178), Expect = 2e-11
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Frame = +1
Query: 1 YFINDLYAGVIGFYDCMRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAG-NPD 177
Y ND + ++ MR L E + ++ AC++L + GK VH +++K+G + +
Sbjct: 213 YVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLN 272
Query: 178 SFVLNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMR 354
SF++ L+D+Y KCG++ + VFDE+ D++ WT+MIV Y Q + L +F R
Sbjct: 273 SFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDER 331
Score = 64.3 bits (155), Expect = 1e-08
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Frame = +1
Query: 40 YDCMRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAG--NPDSFVLNGLVDVYA 213
+D MR+ D + VL AC+ + VG +H + +KAG + +V L++ YA
Sbjct: 427 FDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYA 486
Query: 214 KCGELVSSRKVFDEIVDRDVICWTSMIVAY-VQNDCAEQGLTVFNRM 351
KCG+ S+R +FDE+ +++ I W++MI Y +Q DC+ + L +F M
Sbjct: 487 KCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCS-RSLELFGDM 532
>ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
[Cucumis sativus]
Length = 1830
Score = 170 bits (430), Expect = 1e-40
Identities = 76/123 (61%), Positives = 98/123 (79%)
Frame = +1
Query: 1 YFINDLYAGVIGFYDCMRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPDS 180
YF+NDL+ VI FY+ MR RE DN++FSI+LKACSELR++ G+KVHC IVK G PDS
Sbjct: 1193 YFLNDLFVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVGGPDS 1252
Query: 181 FVLNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRSG 360
FV+ GL+D+Y KCG++ S VF+EI+D++V+ WTSMI YVQN+CAE+GL +FNRMR
Sbjct: 1253 FVMTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDA 1312
Query: 361 LVE 369
LVE
Sbjct: 1313 LVE 1315
Score = 64.7 bits (156), Expect = 8e-09
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +1
Query: 40 YDCMRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVK-AGNPDSFVLNGLVDVYAK 216
++ MR+ L E++ ++ A ++LR + GK VH + +K SF+ +D+Y K
Sbjct: 1306 FNRMRDALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVK 1365
Query: 217 CGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVF-NRMRSGLV 366
CG+ +R ++DE+ D++ WT MIV Y Q GL +F + +RS L+
Sbjct: 1366 CGQTRDARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLL 1416
Score = 59.3 bits (142), Expect = 3e-07
Identities = 26/57 (45%), Positives = 37/57 (64%)
Frame = +1
Query: 187 LNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRS 357
LN L+D+YAKC + + +F ++++DVI W SMI Y QN A L +FN+MRS
Sbjct: 1432 LNALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRLFNQMRS 1488
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = +1
Query: 40 YDCMRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAG--NPDSFVLNGLVDVYA 213
++ MR+ D + L A + L + VG +H + VK G + + ++ L++ YA
Sbjct: 1483 FNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYA 1542
Query: 214 KCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRM 351
KCG+ S+R VFD + +++I W++MI Y L++F+ M
Sbjct: 1543 KCGDARSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNM 1588
>ref|XP_002316102.1| predicted protein [Populus trichocarpa] gi|222865142|gb|EEF02273.1|
predicted protein [Populus trichocarpa]
Length = 665
Score = 163 bits (412), Expect = 2e-38
Identities = 77/123 (62%), Positives = 94/123 (76%)
Frame = +1
Query: 1 YFINDLYAGVIGFYDCMRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPDS 180
YF+N + ++GFY+ MR CL+E DNVVFS VLKACSE R+ G+KVHC IVK GNPDS
Sbjct: 78 YFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDS 137
Query: 181 FVLNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRSG 360
FV GLVD+YAKCGE+ SR VFDE +DR+V W+SMI YVQN+ A+ GL +FNRMR
Sbjct: 138 FVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREE 197
Query: 361 LVE 369
L+E
Sbjct: 198 LIE 200
Score = 84.0 bits (206), Expect = 1e-14
Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Frame = +1
Query: 1 YFINDLYAGVIGFYDCMRNCLRENDNVVFSIVLKACSELRDVGVGKKVHCHIVKAG-NPD 177
Y N+L + ++ MR L E + + I++ AC +L + GK +H +++K G
Sbjct: 178 YVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELG 237
Query: 178 SFVLNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVF 342
S+++ L+D+YAKCG + +R VFDE+ D++ WT+MIV Y QN C E+ L +F
Sbjct: 238 SYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLF 292
Score = 82.0 bits (201), Expect = 5e-14
Identities = 40/98 (40%), Positives = 61/98 (62%)
Frame = +1
Query: 73 DNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPDSFVLNGLVDVYAKCGELVSSRKVFD 252
++V + V +CS+L ++ +G+ +H +K G+ D V N LVD YAKC +R VF+
Sbjct: 303 NDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFE 362
Query: 253 EIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRSGLV 366
I DRDV+ W S+I A+ QN A + L +F++MR G V
Sbjct: 363 TISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSV 400
Score = 57.0 bits (136), Expect = 2e-06
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 73 DNVVFSIVLKACSELRDVGVGKKVHCHIVKAG--NPDSFVLNGLVDVYAKCGELVSSRKV 246
D V VL AC+ L + VG H + VK G + + +V L+ YAKCG+ S+R +
Sbjct: 403 DAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVI 462
Query: 247 FDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRM 351
FD + + + W++MI Y L++F M
Sbjct: 463 FDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDM 497
>ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508818|gb|AES89960.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 871
Score = 149 bits (375), Expect = 3e-34
Identities = 71/124 (57%), Positives = 95/124 (76%), Gaps = 1/124 (0%)
Frame = +1
Query: 1 YFINDLYAGVIGFYDCMRNCLRE-NDNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPD 177
+F+ND+++ V+ FY+ R L ND VVFSI+LK S+LRD+ + K+HC+I+K+ D
Sbjct: 109 HFLNDVHSHVVSFYNLARTTLGSFNDLVVFSILLKTASQLRDIVLTTKLHCNILKSNAAD 168
Query: 178 SFVLNGLVDVYAKCGELVSSRKVFDEIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMRS 357
SFVL LVD Y+KCG+L +RKVFDEI DR V+ WTSMIVAYVQN+CAE+GL +FNRMR
Sbjct: 169 SFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMRE 228
Query: 358 GLVE 369
G ++
Sbjct: 229 GFLD 232
Score = 83.2 bits (204), Expect = 2e-14
Identities = 39/94 (41%), Positives = 61/94 (64%)
Frame = +1
Query: 73 DNVVFSIVLKACSELRDVGVGKKVHCHIVKAGNPDSFVLNGLVDVYAKCGELVSSRKVFD 252
++V + +L AC++L ++ +GK +H +VK G D+ + N LVD+YAKCG + + VF
Sbjct: 341 NSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNSLVDMYAKCGLIPDAHYVFA 400
Query: 253 EIVDRDVICWTSMIVAYVQNDCAEQGLTVFNRMR 354
VD+DV+ W S+I Y Q+ A + L +FNRMR
Sbjct: 401 TTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMR 434
Score = 59.3 bits (142), Expect = 3e-07
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 11/107 (10%)
Frame = +1
Query: 55 NCLREN--DNVVFSI--VLKACSELRDVGVGKKVHCHIVKAG-NPDSFVLNGLVDVYAKC 219
N +RE D VF++ ++ AC++L + GK VH +++K G +S++ L+++Y KC
Sbjct: 224 NRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKC 283
Query: 220 GELVSSRKVFDEIV------DRDVICWTSMIVAYVQNDCAEQGLTVF 342
G++ +R VFDE D++ WT+MIV Y Q + L +F
Sbjct: 284 GDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELF 330