BLASTX nr result
ID: Bupleurum21_contig00021423
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00021423
(1503 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263663.2| PREDICTED: sister chromatid cohesion 1 prote... 358 3e-96
emb|CBI24843.3| unnamed protein product [Vitis vinifera] 335 1e-89
ref|XP_002513194.1| cohesin subunit rad21, putative [Ricinus com... 312 2e-82
ref|XP_002299652.1| predicted protein [Populus trichocarpa] gi|2... 278 3e-72
ref|NP_191514.1| Sister chromatid cohesion 1 protein 3 [Arabidop... 254 4e-65
>ref|XP_002263663.2| PREDICTED: sister chromatid cohesion 1 protein 3-like [Vitis
vinifera]
Length = 761
Score = 358 bits (918), Expect = 3e-96
Identities = 247/604 (40%), Positives = 319/604 (52%), Gaps = 129/604 (21%)
Frame = -2
Query: 1439 MFYSNSFLARKGPLGTVWCAAHLQNRLKKSHITATNIPKTVERIMYPELPIALRMSGHLL 1260
MFYS++FLARKGPLGTVWCAAHLQ++LKKSH TAT+IP TVERIM+PE+PIALRMSGHLL
Sbjct: 1 MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYTATDIPSTVERIMFPEVPIALRMSGHLL 60
Query: 1259 LGVVRIYSKQVDYFCQDCKVLLFGVKKAYTSSDVNLPENATHATLESITLPDNFQLDVMD 1080
LGVVRIYSK+VDY QDC ++L G++KA++S +VNLPE+A+HA SITLPD F+LD +D
Sbjct: 61 LGVVRIYSKKVDYLYQDCNIVLIGIRKAFSSIEVNLPEDASHAPFHSITLPDTFELDALD 120
Query: 1079 IDDNFDSERFRDNHLRSHEEITIEDQILPEQDPYIIITFGEDVVTNSSS-----DSGSRP 915
+D +F E D HLR+ EEIT+ DQI +DPYI ITF EDV+T+ S+ DSG RP
Sbjct: 121 LDADFYVEGALDMHLRAQEEITLTDQIPIGRDPYIAITFDEDVMTDLSNHEEIPDSGVRP 180
Query: 914 INEESHLRTP-------------------------------------------------- 885
++E+ TP
Sbjct: 181 MDEDVVHPTPVEGRADFQDPGLSDIMGQSNERLNEDNLPHDLPEIEVMRDAIHDLHSENL 240
Query: 884 -VGAIVGIQDPGPSNQARL-------EDTNTSIPEIEVIRDAVPDYHLEDVPSWIDPRDD 729
VG G QDPGPS+Q E +PE+EV+RDAV D E +P W + +D
Sbjct: 241 PVGGNAGFQDPGPSHQMEQLNEMFNEETVPQEVPEMEVMRDAVHDLQSERLPVWPEHGND 300
Query: 728 NLEPDIVVMDEIMNEKDNQTPEME--LSFRDGSLP-SPRHEEPFSATAEQEPEILGSHSV 558
E D +D+++NEK+ +P M L + SLP R E P SA + + PEI SH
Sbjct: 301 TTELD-RSLDQMLNEKEILSPNMPDILYSGEQSLPFQQRSEPPASAVSPEAPEIFDSHI- 358
Query: 557 PVGGHKTPELAIRSSPPAEXXXXXXXXXXXXXXXKVTVLSNKVMKHRLENTRDLLRTRKQ 378
GH +P LAI S+PP E + VL NK+MK LE++ LLR +K+
Sbjct: 359 -SFGHVSPALAIGSTPPVEKPKAKSRKRKQLFDVSL-VLPNKLMKKALEDSSGLLRKKKR 416
Query: 377 --CLRLKI---------DKMFSGPILTGFCSDLCDTFSEDFISSKPQLA---------LV 258
C L I + +F P +TG C DL +TF ED IS KP LA LV
Sbjct: 417 LPCSALDIWKINIKSRKENVFFEPSVTGMCEDLHNTFREDVISLKPHLAITEQAFPEPLV 476
Query: 257 AEST---------------------------PAVAESSHAMHDSA--------------- 204
A+S P VA S AM + A
Sbjct: 477 AQSPAPMPEKAFPEPSVARSPAPMPEEAFPGPEVAPSPDAMPEEAIPEPGVQSPAPMPDL 536
Query: 203 -EEIERPRNYKMPTESNVLHDLINSPNRDVPSPTKSMPSSVRRDDYTTAFDTERGLWTDP 27
EIER R+++ SN+L +++ SP R + SPT+ PSS R D+T ++G DP
Sbjct: 537 DIEIERLRDHEGNAGSNILPEIMPSPTRLIYSPTR-FPSSSIRGDFTPISTGDKGSELDP 595
Query: 26 METT 15
M T
Sbjct: 596 MVGT 599
>emb|CBI24843.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 335 bits (860), Expect = 1e-89
Identities = 236/584 (40%), Positives = 302/584 (51%), Gaps = 109/584 (18%)
Frame = -2
Query: 1439 MFYSNSFLARKGPLGTVWCAAHLQNRLKKSHITATNIPKTVERIMYPELPIALRMSGHLL 1260
MFYS++FLARKGPLGTVWCAAHLQ++LKKSH TAT+IP TVERIM+PE+PIALRMSGHLL
Sbjct: 1 MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYTATDIPSTVERIMFPEVPIALRMSGHLL 60
Query: 1259 LGVVRIYSKQVDYFCQDCKVLLFGVKKAYTSSDVNLPENATHATLESITLPDNFQLDVMD 1080
LGVVRIYSK+VDY QDC ++L G++KA++S +VNLPE+A+HA SITLPD F+LD +D
Sbjct: 61 LGVVRIYSKKVDYLYQDCNIVLIGIRKAFSSIEVNLPEDASHAPFHSITLPDTFELDALD 120
Query: 1079 IDDNFDSERFRDNHLRSHEEITIEDQILPEQDPYIIITFGEDVVTNSS------------ 936
+D +F E D HLR+ EEIT+ DQI +DPYI ITF E + S
Sbjct: 121 LDADFYVEGALDMHLRAQEEITLTDQIPIGRDPYIAITFDEVNILFPSLLNQNALSLCCL 180
Query: 935 SDSGSRPINEESHLR---------------------------TPVGAIVGIQDPGPSNQA 837
D G I +S+ R PVG G QDPGPS+Q
Sbjct: 181 MDPGLSDIMGQSNERLNEDNLPHDLPEIEVMRDAIHDLHSENLPVGGNAGFQDPGPSHQM 240
Query: 836 RL-------EDTNTSIPEIEVIRDAVPDYHLEDVPSWIDPRDDNLEPDIVVMDEIMNEKD 678
E +PE+EV+RDAV D E +P W + +D E D +D+++NEK+
Sbjct: 241 EQLNEMFNEETVPQEVPEMEVMRDAVHDLQSERLPVWPEHGNDTTELD-RSLDQMLNEKE 299
Query: 677 NQTPEMELSFRDGSLPSPRHEEPFSATAEQEPEILGSHSVPVGGHKTPELAIRSSPPAEX 498
+P M L S PF A L S V GH +P LAI S+PP E
Sbjct: 300 ILSPNM-----PDILYSGEQSLPFQQRANSILPCLNLLS-HVSGHVSPALAIGSTPPVEK 353
Query: 497 XXXXXXXXXXXXXXKVTVLSNKVMKHRLENTRDLLRTRKQ--CLRLKI---------DKM 351
+ VL NK+MK LE++ LLR +K+ C L I + +
Sbjct: 354 PKAKSRKRKQLFDVSL-VLPNKLMKKALEDSSGLLRKKKRLPCSALDIWKINIKSRKENV 412
Query: 350 FSGPILTGFCSDLCDTFSEDFISSKPQLA---------LVAEST---------------- 246
F P +TG C DL +TF ED IS KP LA LVA+S
Sbjct: 413 FFEPSVTGMCEDLHNTFREDVISLKPHLAITEQAFPEPLVAQSPAPMPEKAFPEPSVARS 472
Query: 245 -----------PAVAESSHAMHDSA----------------EEIERPRNYKMPTESNVLH 147
P VA S AM + A EIER R+++ SN+L
Sbjct: 473 PAPMPEEAFPGPEVAPSPDAMPEEAIPEPGVQSPAPMPDLDIEIERLRDHEGNAGSNILP 532
Query: 146 DLINSPNRDVPSPTKSMPSSVRRDDYTTAFDTERGLWTDPMETT 15
+++ SP R + SPT+ PSS R D+T ++G DPM T
Sbjct: 533 EIMPSPTRLIYSPTR-FPSSSIRGDFTPISTGDKGSELDPMVGT 575
>ref|XP_002513194.1| cohesin subunit rad21, putative [Ricinus communis]
gi|223547692|gb|EEF49185.1| cohesin subunit rad21,
putative [Ricinus communis]
Length = 774
Score = 312 bits (799), Expect = 2e-82
Identities = 210/508 (41%), Positives = 286/508 (56%), Gaps = 79/508 (15%)
Frame = -2
Query: 1439 MFYSNSFLARKGPLGTVWCAAHLQNRLKKSHITATNIPKTVERIMYPELPIALRMSGHLL 1260
MFYS +FLARKGPLGTVWCAAHLQ+RLKKSH T+T+I TV+RIM+PE+PIALRMSGHLL
Sbjct: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTDISSTVDRIMFPEVPIALRMSGHLL 60
Query: 1259 LGVVRIYSKQVDYFCQDCKVLLFGVKKAYTSSDVNLPENATHATLESITLPDNFQLDVMD 1080
LGVVRIYSK+VD+ DC V+L G++KA+TS +VNLPENAT A ES+TLP F LD +D
Sbjct: 61 LGVVRIYSKKVDFLYHDCNVVLVGLRKAFTSIEVNLPENATTAKFESVTLPPTFDLDALD 120
Query: 1079 IDDNFDSERFRDNHLRSHEEITIEDQILPEQDPYIIITFGEDVVTNS-----SSDSGSRP 915
+D + D+ DNH+RS EEIT++DQI ++DPY++I+F EDV+ ++ ++G RP
Sbjct: 121 VDFDIDAYGSPDNHMRSQEEITLQDQIPTDRDPYVVISFDEDVMMDTLPPEEELNAGIRP 180
Query: 914 INE-------ESHLRTP----------VGAIVGIQD------------------------ 858
+ ++ + +P V +QD
Sbjct: 181 TEDIVPPSGVDTDMASPHTIPSSRIEVTSETVDLQDSGPTNLTEVLMDFADLQETCPSNK 240
Query: 857 ------------PGPSNQARLEDTNTSI------PEIEVIRDAVPDYHLEDVPS-WIDPR 735
PGPSNQ E N++I PEIEV+RD V + E++P + +
Sbjct: 241 TELQTQTLDFQEPGPSNQT--EVLNSAINNDNFPPEIEVLRDHVDVFSSENLPPVFTHQQ 298
Query: 734 DDNLEPDIVVMDEIMNEKDNQTPEMELSFRDGSLPSP---RHEEPFSATAEQEPEILGSH 564
+D EP+I +D+ +NEK +P E G SP R E P SA+ + P I SH
Sbjct: 299 NDASEPNI-SLDQGLNEKKTPSPFKEDVIPSGGQSSPFQQRSESPNSASRD-APGIFDSH 356
Query: 563 SVPVGGHKTPELAIRSSPPAEXXXXXXXXXXXXXXXKVTVLSNKVMKHRLENTRDLLRTR 384
G +PELAIRS+ PA + TVL+NK MK LEN++D+LR R
Sbjct: 357 I--SFGRVSPELAIRST-PAVQQPRPRTRKRKHFFDEATVLTNKFMKKALENSKDILRKR 413
Query: 383 KQC---------LR--LKIDKMFSGPILTGFCSDLCDTFSEDFISSKPQLALVAESTPAV 237
++ LR L+ +++ S P+LTG C+DLC+ +D+IS KP L L E TP
Sbjct: 414 REIPSTALGIWKLRNSLRKEQVLSEPLLTGSCADLCNLL-KDYISGKPHLTLEREVTPEP 472
Query: 236 AESSHAMHDSAEEIERPRNYKMPTESNV 153
++ A + E I R+ P S V
Sbjct: 473 RVTTSA--PAIEVIPEWRDATSPARSTV 498
>ref|XP_002299652.1| predicted protein [Populus trichocarpa] gi|222846910|gb|EEE84457.1|
predicted protein [Populus trichocarpa]
Length = 818
Score = 278 bits (711), Expect = 3e-72
Identities = 225/663 (33%), Positives = 304/663 (45%), Gaps = 185/663 (27%)
Frame = -2
Query: 1439 MFYSNSFLARKGPLGTVWCAAHLQNRLKKSHITATNIPKTVERIMYPELPIALRMSGHLL 1260
MFYS +FLARKGPLGTVWCAAHLQ+RLKKSH T+T+IP TV+RIM+PE+PIALRMS HLL
Sbjct: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTDIPSTVDRIMFPEVPIALRMSSHLL 60
Query: 1259 LGVVRIYSKQVDYFCQDCKVLLFGVKKAYTSSDVNLPENATHATLESITLPDNFQLDVMD 1080
LGVVRIY K+VDY QDC V L G+ KA+T+++VNLPENAT AT ESITLP LD D
Sbjct: 61 LGVVRIYKKKVDYLFQDCTVALAGLNKAFTTTEVNLPENATTATFESITLPPTLNLDGFD 120
Query: 1079 IDDNFDSERF----RDNHLRSHEEITIEDQILPEQDPYIIITFGED----VVTNSSSDSG 924
+ D D E F DNHL+S+EEITI DQI PYI I ED V S
Sbjct: 121 MSDYLDPEGFVVRSPDNHLKSYEEITIPDQI----SPYITIHVDEDNICPSVPEQDPSSE 176
Query: 923 SRPINEESHLRTPVGAIVGIQD--------------PGPSNQ--ARLEDTNTSIP----- 807
+RP+ ++ H PV + QD PG SNQ ++D + P
Sbjct: 177 ARPV-DDIHPPPPVNGDLPSQDTGQRTQTVVNNETGPGASNQTDVLVDDMDFHDPGQSNQ 235
Query: 806 -----EIEVIRDAVPDYHLEDVPSWIDPRD--------------------DNLEPDIVVM 702
+ E RD P E + D +D +N P+I VM
Sbjct: 236 PEDPMDTEDFRDPAPSNQTEVLMHTGDFQDPGPSNQTSVPTETLNQSLSGENSPPEIEVM 295
Query: 701 ------------------------------DEIMNEKDNQTPEME--LSFRDGSLPSPRH 618
DE++NEKD +P ME L + SLP +H
Sbjct: 296 RDAATDLGSESFPPLSPTRKDDAAEPNRSLDEVLNEKDFLSPIMEDALPSLEKSLPFQQH 355
Query: 617 EE-PFSATAEQEPEILGSHS--------VPVGGHKTPELAIRSSPPAE--------XXXX 489
+ P SA ++ P++ +H + +G + +P+ AIRS+PP +
Sbjct: 356 SKAPTSAASQDIPDVFDTHGSFGESVLLICLGWNISPQFAIRSTPPVQQPQPGPPPAQQP 415
Query: 488 XXXXXXXXXXXKVTVLSNKVMKHRLENTRDLL---RTRKQCL--------RLKIDKMFSG 342
+ TVL+N+ M+ LE+ DL+ RTR + L+ +++F
Sbjct: 416 RPRRRRRMQFDEATVLTNRFMRRALEDPSDLMRQKRTRSSSMVGIWRLNNSLRKEQIFYE 475
Query: 341 PILT----------------GFCSDLCDTFSEDFISSKPQLAL----VAE---------- 252
P++T G C DLC +D+I++KP L L ++E
Sbjct: 476 PLITGCGIDFQENFDACLSPGSCEDLCKLSEKDYITTKPHLTLEQGDISEHGVTTSPGPE 535
Query: 251 --------------------STPAVAESSHAMHDSAEEIERPRNYKMPTESNVLHDL--- 141
S P +A+S S E ERP+ + +VL ++
Sbjct: 536 TEAIPEPRMASSPAPTAEPISEPMIAQSPVPGRQSGMEKERPQQDLGCYDHSVLPEIDME 595
Query: 140 ------------------INSPNRDVPSPTKSMPSSVRRDDYTTAFDTERGLWTDPMETT 15
+ SP +PSP + MPSS+RRDD+T + G T P E T
Sbjct: 596 IERLRNDGGHDGNDFLSDLPSPAMSMPSPGRFMPSSLRRDDFTPMPISSFGSGTVPQEGT 655
Query: 14 RGT 6
T
Sbjct: 656 STT 658
>ref|NP_191514.1| Sister chromatid cohesion 1 protein 3 [Arabidopsis thaliana]
gi|30913284|sp|Q9FQ19.2|SCC13_ARATH RecName: Full=Sister
chromatid cohesion 1 protein 3; AltName: Full=SCC1
homolog 3; Short=AtRAD21-2
gi|18157647|gb|AAL62059.1|AF400128_1 RAD21-2 [Arabidopsis
thaliana] gi|6996291|emb|CAB75452.1| putative protein
[Arabidopsis thaliana] gi|332646418|gb|AEE79939.1| Sister
chromatid cohesion 1 protein 3 [Arabidopsis thaliana]
Length = 693
Score = 254 bits (649), Expect = 4e-65
Identities = 172/458 (37%), Positives = 237/458 (51%), Gaps = 53/458 (11%)
Frame = -2
Query: 1439 MFYSNSFLARKGPLGTVWCAAHLQNRLKKSHITATNIPKTVERIMYPELPIALRMSGHLL 1260
MFYS++ LARKGPLGTVWCAAH+ RLKKS T+ NIP TV+ IM+PE+P+ALR S HLL
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60
Query: 1259 LGVVRIYSKQVDYFCQDCKVLLFGVKKAYTSSDVNLPENATHATLESITLPDNFQLDVMD 1080
+GVVRIYSK+VDY D +L V KA+ S+ VNLPE+A A ES+TLP LD D
Sbjct: 61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120
Query: 1079 IDDNFDSERFRDNHLRSHEEITIEDQILPEQDPYIIITFGEDVVTNS-------SSDSGS 921
++D+ F DNH RS E+IT+ DQI DPY+ +TF ED+++ S S++ S
Sbjct: 121 LEDDTLDMEF-DNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESIPMDVDQSTEPVS 179
Query: 920 R--------------PINE--ESHLRTPVGA---------IVGIQDPGPSNQARLEDTNT 816
R P NE +S++ G +QDP SN N+
Sbjct: 180 RHTGEIDVETAHETGPDNEPRDSNIAFDTGTYSPRNVTEEFTEVQDPRQSNLTEERIPNS 239
Query: 815 ---------SIPEIEVIRDAVPDYHLEDVPSWIDPRDDNLEPDIVVMDEIMNEKDNQTPE 663
++PEIE +RDA D PS+ + D +DE +NEK+ P
Sbjct: 240 ERNDATSPGTVPEIERMRDAAHDLSPTSHPSFAAQQQDVRVERTESLDETLNEKEPTIPS 299
Query: 662 MELSFRDGSLPSPRHEEPFSATAEQEPEILGSHSVPVGG-HKTPELAIRSSPPAEXXXXX 486
++ + L S RH F + GS H +P+L ++ SPP +
Sbjct: 300 ID----EEMLNSGRHSA-FELRSGSPGSAAGSEEERADFVHPSPQLVLQPSPPPQPQRRA 354
Query: 485 XXXXXXXXXXKVTVLSNKVMKHRLENTRDLLRTRKQCLRLKI-----------DKMFSGP 339
VTVL+NK + RL++ D LR RK+ K+ D+ F+ P
Sbjct: 355 RKRKNFDG---VTVLTNKNISERLKDPSDTLRKRKKMPSSKLKFWRMNNQSRKDQNFNEP 411
Query: 338 ILTGFCSDLCDTFSEDFISSKPQLALVAESTPAVAESS 225
+ TGF DL + F +D+++SKP LA+ E+ P A S
Sbjct: 412 LFTGFSDDLRNVFEKDYVASKPHLAVSDETLPEPASVS 449