BLASTX nr result
ID: Bupleurum21_contig00021400
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00021400
(570 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 144 2e-57
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 143 3e-57
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 143 3e-57
ref|XP_002335867.1| predicted protein [Populus trichocarpa] gi|2... 147 9e-34
gb|AAN62347.1|AF506028_14 CTV.20 [Citrus trifoliata] 73 4e-21
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 144 bits (362), Expect(2) = 2e-57
Identities = 69/123 (56%), Positives = 85/123 (69%), Gaps = 3/123 (2%)
Frame = +3
Query: 45 LKHKNHLLPWTKTLHLYPIEI---LSPIREEIARLSCAESHTEFLQKCSHPLWKNPDFFV 215
++ KN +T+ L+ + L + + I CA+SH +FL KCSHPLW N DFF+
Sbjct: 1314 IRWKNQFKRYTEIPRLFQLTTSNELQQLEDVIKNQLCADSHVDFLSKCSHPLWLNQDFFI 1373
Query: 216 SLPFKKNEDINPTKANHKGMNHDHYALAIKEVDQLSQEGLIEETKSQWACEAFYVNKRSE 395
LPFKKNE+INPTKA+H GMN +H LAIKE D+L Q LIE + SQWACEAFYVNKRSE
Sbjct: 1374 QLPFKKNENINPTKASHSGMNPEHLQLAIKECDELQQFDLIEPSDSQWACEAFYVNKRSE 1433
Query: 396 QTR 404
Q R
Sbjct: 1434 QVR 1436
Score = 104 bits (259), Expect(2) = 2e-57
Identities = 46/65 (70%), Positives = 55/65 (84%)
Frame = +1
Query: 376 MSTKDQNRRGKLRLVINYQPLNHFLEDDKFPLPKREVLFQKLPQAKIFSKFDLKSGFWQL 555
++ + + RGKLRLVINYQPLNHFL+DDKFP+P + LF L +AK+FSKFDLKSGFWQL
Sbjct: 1428 VNKRSEQVRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQL 1487
Query: 556 GIHPN 570
GIHPN
Sbjct: 1488 GIHPN 1492
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 143 bits (360), Expect(2) = 3e-57
Identities = 68/123 (55%), Positives = 85/123 (69%), Gaps = 3/123 (2%)
Frame = +3
Query: 45 LKHKNHLLPWTKTLHLYPIEI---LSPIREEIARLSCAESHTEFLQKCSHPLWKNPDFFV 215
++ KN +T+ L+ + L + + I CAESH +FL KCSHPLW N DFF+
Sbjct: 1315 IRWKNQFKRYTEIPRLFQLTTSNELQQLEDVIKNQLCAESHVDFLSKCSHPLWLNQDFFI 1374
Query: 216 SLPFKKNEDINPTKANHKGMNHDHYALAIKEVDQLSQEGLIEETKSQWACEAFYVNKRSE 395
LPFK+NE+INPTKA+H GMN +H LA+KE D+L Q LIE + SQWACEAFYVNKRSE
Sbjct: 1375 QLPFKRNENINPTKASHSGMNPEHLQLALKECDELQQFDLIEPSDSQWACEAFYVNKRSE 1434
Query: 396 QTR 404
Q R
Sbjct: 1435 QVR 1437
Score = 104 bits (259), Expect(2) = 3e-57
Identities = 46/65 (70%), Positives = 55/65 (84%)
Frame = +1
Query: 376 MSTKDQNRRGKLRLVINYQPLNHFLEDDKFPLPKREVLFQKLPQAKIFSKFDLKSGFWQL 555
++ + + RGKLRLVINYQPLNHFL+DDKFP+P + LF L +AK+FSKFDLKSGFWQL
Sbjct: 1429 VNKRSEQVRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQL 1488
Query: 556 GIHPN 570
GIHPN
Sbjct: 1489 GIHPN 1493
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 143 bits (360), Expect(2) = 3e-57
Identities = 68/123 (55%), Positives = 85/123 (69%), Gaps = 3/123 (2%)
Frame = +3
Query: 45 LKHKNHLLPWTKTLHLYPIEI---LSPIREEIARLSCAESHTEFLQKCSHPLWKNPDFFV 215
++ KN +T+ L+ + L + + I CAESH +FL KCSHPLW N DFF+
Sbjct: 1315 IRWKNQFKRYTEIPRLFQLTTSNELQQLEDVIKNQLCAESHVDFLSKCSHPLWLNQDFFI 1374
Query: 216 SLPFKKNEDINPTKANHKGMNHDHYALAIKEVDQLSQEGLIEETKSQWACEAFYVNKRSE 395
LPFK+NE+INPTKA+H GMN +H LA+KE D+L Q LIE + SQWACEAFYVNKRSE
Sbjct: 1375 QLPFKRNENINPTKASHSGMNPEHLQLALKECDELQQFDLIEPSDSQWACEAFYVNKRSE 1434
Query: 396 QTR 404
Q R
Sbjct: 1435 QVR 1437
Score = 104 bits (259), Expect(2) = 3e-57
Identities = 46/65 (70%), Positives = 55/65 (84%)
Frame = +1
Query: 376 MSTKDQNRRGKLRLVINYQPLNHFLEDDKFPLPKREVLFQKLPQAKIFSKFDLKSGFWQL 555
++ + + RGKLRLVINYQPLNHFL+DDKFP+P + LF L +AK+FSKFDLKSGFWQL
Sbjct: 1429 VNKRSEQVRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQL 1488
Query: 556 GIHPN 570
GIHPN
Sbjct: 1489 GIHPN 1493
>ref|XP_002335867.1| predicted protein [Populus trichocarpa] gi|222835938|gb|EEE74359.1|
predicted protein [Populus trichocarpa]
Length = 656
Score = 147 bits (372), Expect = 9e-34
Identities = 71/125 (56%), Positives = 88/125 (70%), Gaps = 5/125 (4%)
Frame = +3
Query: 45 LKHKNHLLPWTKTLHLYPIEILSP-----IREEIARLSCAESHTEFLQKCSHPLWKNPDF 209
+++K H LP+T T LY I+ S I+ +I + SC+ SH EFL KCSHPLW+NP F
Sbjct: 523 IQYKTHFLPYTLTPSLYEIQSSSTDHIALIKAQIIQHSCSNSHQEFLAKCSHPLWQNPQF 582
Query: 210 FVSLPFKKNEDINPTKANHKGMNHDHYALAIKEVDQLSQEGLIEETKSQWACEAFYVNKR 389
F+ LPFK NEDINPTKA+H GMN +H LA +E L +GLIE T S W+CEAFYVNKR
Sbjct: 583 FIKLPFKLNEDINPTKASHSGMNPEHKLLAQEECAHLQAQGLIEPTDSLWSCEAFYVNKR 642
Query: 390 SEQTR 404
+EQ R
Sbjct: 643 AEQKR 647
>gb|AAN62347.1|AF506028_14 CTV.20 [Citrus trifoliata]
Length = 3148
Score = 72.8 bits (177), Expect(2) = 4e-21
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = +1
Query: 400 RGKLRLVINYQPLNHFLEDDKFPLPKREVLFQKLPQAKIFSKFDLKSGFWQLGIHP 567
RG RLVINY+PLN L+ ++P+P ++ L QKL A IFSKFD+KSGFWQ+ IHP
Sbjct: 2657 RGTPRLVINYKPLNKALKWIRYPIPNKKDLLQKLHSAFIFSKFDMKSGFWQIQIHP 2712
Score = 53.9 bits (128), Expect(2) = 4e-21
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 192 WKNPDFFVSLPFKKNEDIN--PTKANHKGMNHDHYALAIKEVDQLSQEGLIEETKSQWAC 365
W V LP++ + D PTKA MN D +E++ L ++GLI +++S W+C
Sbjct: 2585 WNRKQHMVDLPYENSFDEKQIPTKARPIQMNMDLERHCKEEINDLVKKGLIVKSRSPWSC 2644
Query: 366 EAFYVNKRSEQTR 404
AFYVNK SE R
Sbjct: 2645 AAFYVNKNSEIER 2657
Score = 69.3 bits (168), Expect(2) = 4e-19
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = +1
Query: 400 RGKLRLVINYQPLNHFLEDDKFPLPKREVLFQKLPQAKIFSKFDLKSGFWQLGIHP 567
RG RLVINY+PLN L+ ++P+P ++ L QKL A IFSKFD+KS FWQ+ IHP
Sbjct: 1192 RGTPRLVINYKPLNKALKWIRYPIPNKKDLLQKLHSAFIFSKFDMKSVFWQIQIHP 1247
Score = 50.4 bits (119), Expect(2) = 4e-19
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Frame = +3
Query: 213 VSLPFKKNEDIN--PTKANHKGMNHDHYALAIKEVDQLSQEGLIEETKSQWACEAFYVNK 386
V LP++ + D PTKA MN D +E++ L ++GLI +++S W+C AFYVNK
Sbjct: 1127 VDLPYENSFDEKQIPTKARPIQMNMDLERHCKEEINDLVKKGLIVKSRSPWSCAAFYVNK 1186
Query: 387 RSEQTR 404
SE R
Sbjct: 1187 NSEIER 1192