BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00021112
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...   124   8e-27
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   116   2e-24
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...   116   2e-24
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   110   9e-23
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   110   1e-22

>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score =  124 bits (311), Expect = 8e-27
 Identities = 70/123 (56%), Positives = 76/123 (61%), Gaps = 10/123 (8%)
 Frame = +1

Query: 1   RQTHEKDKKAIKLAEMNRRNRVENFKNASGLKST-IGLKAGDAGYDPFSRRWTRSRNYYV 177
           R++ EKD KAI+LAEMNR+NR ENFKNAS  K     LKAG+AGYDPFSRRWTRSRNYYV
Sbjct: 300 RRSKEKDAKAIRLAEMNRKNRAENFKNASESKRVNTSLKAGEAGYDPFSRRWTRSRNYYV 359

Query: 178 PKAGGGGEAAVTENGDQTAELVGPDVG---------GXXXXXXXXXXXXXXGKLVDTSAP 330
            K GGG EAA   NG+  A  VG             G              GKLVDTSAP
Sbjct: 360 SKPGGGDEAAAVANGEAPAAFVGAGSNGTGGKGAEVGVAATAAALEAAADAGKLVDTSAP 419

Query: 331 VDQ 339
           VDQ
Sbjct: 420 VDQ 422


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  116 bits (290), Expect = 2e-24
 Identities = 67/123 (54%), Positives = 74/123 (60%), Gaps = 10/123 (8%)
 Frame = +1

Query: 1   RQTHEKDKKAIKLAEMNRRNRVENFKNASGLKST-IGLKAGDAGYDPFSRRWTRSRNYYV 177
           RQT  KD KAI+LAEMNR+NR ENF+NAS LK     LKAG+AGYDPFSRRWTRSRNYYV
Sbjct: 467 RQTQGKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYV 526

Query: 178 PKAGGGGEAAVTEN--------GDQTAELVGPDV-GGXXXXXXXXXXXXXXGKLVDTSAP 330
            K  GG  AA T N         ++T    G     G              GKLVDT+AP
Sbjct: 527 SKPAGGDAAAATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAP 586

Query: 331 VDQ 339
           VDQ
Sbjct: 587 VDQ 589


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
           gi|222859693|gb|EEE97240.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 664

 Score =  116 bits (290), Expect = 2e-24
 Identities = 67/124 (54%), Positives = 74/124 (59%), Gaps = 11/124 (8%)
 Frame = +1

Query: 1   RQTHEKDKKAIKLAEMNRRNRVENFKNASGLKS-TIGLKAGDAGYDPFSRRWTRSRNYYV 177
           RQ   KD KA++LAEMNR+NRVENF+NAS LK    GLKAG+AGYDPFSRRWTRSRNYYV
Sbjct: 470 RQAKVKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYV 529

Query: 178 PKAGGGGEAAVTENGD--QTAELVGPD--------VGGXXXXXXXXXXXXXXGKLVDTSA 327
               GG +A    N +   TA L   D          G              GKLVDTSA
Sbjct: 530 SNPAGGDDAVAASNSEANDTAALADSDHVVAGAISESGVAATAAALDAAADAGKLVDTSA 589

Query: 328 PVDQ 339
           PVDQ
Sbjct: 590 PVDQ 593


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score =  110 bits (276), Expect = 9e-23
 Identities = 64/121 (52%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
 Frame = +1

Query: 1   RQTHEKDKKAIKLAEMNRRNRVENFKNASGLKSTIGLKAGDAGYDPFSRRWTRSRNYYVP 180
           R+   KD KAI+LAEMNR+NRVENFKNAS L+    LKAG+AGYDPFSRRWTRSRNYYV 
Sbjct: 468 RRLQMKDAKAIRLAEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVS 527

Query: 181 KAG-GGGEAAVTENGDQT--------AELVGPDVGGXXXXXXXXXXXXXXGKLVDTSAPV 333
            AG   G A    N D           E  G    G              GKLVDT+APV
Sbjct: 528 NAGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPV 587

Query: 334 D 336
           D
Sbjct: 588 D 588


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  110 bits (275), Expect = 1e-22
 Identities = 66/121 (54%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
 Frame = +1

Query: 1   RQTHEKDKKAIKLAEMNRRNRVENFKNASGLKST-IGLKAGDAGYDPFSRRWTRSRNYYV 177
           RQ  +KD KA+KLAEMNR+NR ENFKNAS LK   IGLKAG+AGYDPFSRRWTRSRNYY 
Sbjct: 465 RQAKQKDAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYA 524

Query: 178 PKAG---GGGEAAVTEN----GDQTAELVGPDVGGXXXXXXXXXXXXXXGKLVDTSAPVD 336
            K G     G   V  N    G            G              GKLVDTSAPVD
Sbjct: 525 AKPGEKAAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVD 584

Query: 337 Q 339
           Q
Sbjct: 585 Q 585