BLASTX nr result
ID: Bupleurum21_contig00021054
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00021054
(428 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003617008.1| Cellular nucleic acid-binding protein [Medic... 127 9e-28
ref|XP_004137358.1| PREDICTED: cold shock domain-containing prot... 124 1e-26
ref|XP_004173390.1| PREDICTED: DNA-binding protein HEXBP-like, p... 123 1e-26
ref|XP_002875611.1| hypothetical protein ARALYDRAFT_323091 [Arab... 101 6e-20
ref|NP_189945.1| zinc knuckle (CCHC-type) family protein [Arabid... 100 2e-19
>ref|XP_003617008.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355518343|gb|AES99966.1| Cellular nucleic
acid-binding protein [Medicago truncatula]
Length = 638
Score = 127 bits (319), Expect = 9e-28
Identities = 58/118 (49%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +1
Query: 16 EVSCYRCGQTGHTGLACTRLRNESNGTGTPSSCYRCGEGGHFARECTSS-QASTWMRGES 192
E SCY+CGQ GH G AC+RL+NE+ TPSSCY+CGE GHFAREC+SS +AS+ + E+
Sbjct: 402 EFSCYKCGQMGHIGWACSRLKNEATAATTPSSCYKCGEQGHFARECSSSVKASSRWQPEN 461
Query: 193 NVMGTPSSCYKCGEGGHFARGCTSSVKSSKRNREYITPKSEGWEQDDNWAKSKSLPFD 366
TPSSCY+CGE GHF+R C+SSVK + + ++ ++++ +S P+D
Sbjct: 462 TDPATPSSCYRCGEEGHFSRECSSSVKVGNKKHNLSSTETPRSQKENGHMGYRSAPYD 519
>ref|XP_004137358.1| PREDICTED: cold shock domain-containing protein 3-like [Cucumis
sativus]
Length = 406
Score = 124 bits (310), Expect = 1e-26
Identities = 56/90 (62%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Frame = +1
Query: 19 VSCYRCGQTGHTGLACTRLRNESNGTGTPSSCYRCGEGGHFARECTSS-QASTWMRGESN 195
VSCY+CGQTGHTGL+C+RLR E++G + S CYRCG+ GHFARECTSS ++ R E++
Sbjct: 304 VSCYKCGQTGHTGLSCSRLRGEASGAVSSSQCYRCGDEGHFARECTSSTKSGKRNREEAS 363
Query: 196 VMGTPSSCYKCGEGGHFARGCTSSVKSSKR 285
+P+ CYKCGE GHFAR CTSS K KR
Sbjct: 364 GAASPNPCYKCGEEGHFARECTSSTKVDKR 393
Score = 80.1 bits (196), Expect = 2e-13
Identities = 39/93 (41%), Positives = 55/93 (59%)
Frame = +1
Query: 16 EVSCYRCGQTGHTGLACTRLRNESNGTGTPSSCYRCGEGGHFARECTSSQASTWMRGESN 195
++ CY C + GH L C ++++ SCY+CG+ GH C+ +RGE++
Sbjct: 280 KIQCYICQKFGH--LCCVNFTSDTSVV----SCYKCGQTGHTGLSCSR------LRGEAS 327
Query: 196 VMGTPSSCYKCGEGGHFARGCTSSVKSSKRNRE 294
+ S CY+CG+ GHFAR CTSS KS KRNRE
Sbjct: 328 GAVSSSQCYRCGDEGHFARECTSSTKSGKRNRE 360
Score = 68.6 bits (166), Expect = 5e-10
Identities = 31/59 (52%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Frame = +1
Query: 7 AVGEVSCYRCGQTGHTGLACT-------RLRNESNGTGTPSSCYRCGEGGHFARECTSS 162
AV CYRCG GH CT R R E++G +P+ CY+CGE GHFARECTSS
Sbjct: 329 AVSSSQCYRCGDEGHFARECTSSTKSGKRNREEASGAASPNPCYKCGEEGHFARECTSS 387
>ref|XP_004173390.1| PREDICTED: DNA-binding protein HEXBP-like, partial [Cucumis
sativus]
Length = 425
Score = 123 bits (309), Expect = 1e-26
Identities = 55/90 (61%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Frame = +1
Query: 19 VSCYRCGQTGHTGLACTRLRNESNGTGTPSSCYRCGEGGHFARECTS-SQASTWMRGESN 195
VSCY+CGQTGHTGL+C+RLR E++G + S CYRCG+ GHFARECTS +++ R E++
Sbjct: 304 VSCYKCGQTGHTGLSCSRLRGEASGAVSSSQCYRCGDEGHFARECTSATKSGKRNREEAS 363
Query: 196 VMGTPSSCYKCGEGGHFARGCTSSVKSSKR 285
+P+ CYKCGE GHFAR CTSS K KR
Sbjct: 364 GAASPNPCYKCGEEGHFARECTSSTKGGKR 393
Score = 79.0 bits (193), Expect = 4e-13
Identities = 38/93 (40%), Positives = 55/93 (59%)
Frame = +1
Query: 16 EVSCYRCGQTGHTGLACTRLRNESNGTGTPSSCYRCGEGGHFARECTSSQASTWMRGESN 195
++ CY C + GH L C ++++ SCY+CG+ GH C+ +RGE++
Sbjct: 280 KIQCYICQKFGH--LCCVNFTSDTSVV----SCYKCGQTGHTGLSCSR------LRGEAS 327
Query: 196 VMGTPSSCYKCGEGGHFARGCTSSVKSSKRNRE 294
+ S CY+CG+ GHFAR CTS+ KS KRNRE
Sbjct: 328 GAVSSSQCYRCGDEGHFARECTSATKSGKRNRE 360
Score = 65.9 bits (159), Expect = 3e-09
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Frame = +1
Query: 25 CYRCGQTGHTGLACT-------RLRNESNGTGTPSSCYRCGEGGHFARECTSS 162
CY+CG+ GH CT R+ E++G +PSSCYRCGE GHFAREC S
Sbjct: 371 CYKCGEEGHFARECTSSTKGGKRILEETSGAASPSSCYRCGEQGHFARECAGS 423
>ref|XP_002875611.1| hypothetical protein ARALYDRAFT_323091 [Arabidopsis lyrata subsp.
lyrata] gi|297321449|gb|EFH51870.1| hypothetical protein
ARALYDRAFT_323091 [Arabidopsis lyrata subsp. lyrata]
Length = 556
Score = 101 bits (252), Expect = 6e-20
Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 11/127 (8%)
Frame = +1
Query: 19 VSCYRCGQTGHTGLAC-----TRLRNESNGTGTP------SSCYRCGEGGHFARECTSSQ 165
VSCYRCGQ GHTGLAC R N+S+ P S CYRCGE GHFAREC +S
Sbjct: 285 VSCYRCGQLGHTGLACGRHYEERNENDSSSLSFPENNREASECYRCGEEGHFARECPNSS 344
Query: 166 ASTWMRGESNVMGTPSSCYKCGEGGHFARGCTSSVKSSKRNREYITPKSEGWEQDDNWAK 345
+ + +G + S CY+C GHFAR C +S + SKR+R+ TP + +++ +
Sbjct: 345 SISTSQGRE----SQSLCYRCNGAGHFARECPNSSQVSKRDRDTSTPSHKSRKKNKENLE 400
Query: 346 SKSLPFD 366
S P +
Sbjct: 401 HDSTPHE 407
>ref|NP_189945.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|9967508|emb|CAC05633.1| putative protein [Arabidopsis
thaliana] gi|20466716|gb|AAM20675.1| putative protein
[Arabidopsis thaliana] gi|25084296|gb|AAN72214.1|
putative protein [Arabidopsis thaliana]
gi|332644290|gb|AEE77811.1| zinc knuckle (CCHC-type)
family protein [Arabidopsis thaliana]
Length = 551
Score = 100 bits (248), Expect = 2e-19
Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 11/127 (8%)
Frame = +1
Query: 19 VSCYRCGQTGHTGLACTRLRNES--NGTGTP---------SSCYRCGEGGHFARECTSSQ 165
VSCYRCGQ GH+GLAC R ES N + TP S CYRCGE GHFAREC +S
Sbjct: 285 VSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSS 344
Query: 166 ASTWMRGESNVMGTPSSCYKCGEGGHFARGCTSSVKSSKRNREYITPKSEGWEQDDNWAK 345
+ + G + + CY+C GHFAR C +S + SKR+RE T + +++ ++
Sbjct: 345 SISTSHGRE----SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENSE 400
Query: 346 SKSLPFD 366
S P +
Sbjct: 401 HDSTPHE 407