BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00020942
         (1045 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   121   7e-44
ref|XP_002518871.1| conserved hypothetical protein [Ricinus comm...    88   3e-32
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici...   100   3e-32
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    92   2e-31
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...    92   2e-31

>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  121 bits (304), Expect(2) = 7e-44
 Identities = 65/234 (27%), Positives = 115/234 (49%)
 Frame = -2

Query: 729  NVWNILMPEIKVGDESNFMEWFIHMLARCNNAKRAEVATLCWSIWKSRNEKVWN*KITPV 550
            +VW+     +  G+  +F++W   M A C+    A+   +CW +W  RN+ VWN +I   
Sbjct: 571  DVWDESGLAMLQGNFGSFVDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHS 630

Query: 549  NRIVAMAKEYLTQWRYAQDRVYNALSQPMMVGDGAYAWVRPQTDTVKVTTDAAIFSDRGE 370
             ++V      L  W +A + +  A++ P      +  W +P    +K+  D A+F D+G 
Sbjct: 631  QQVVNGCFTMLESWFHANETLATAVTVPSY----SSKWQKPDYGWIKINVDGAVFPDKG- 685

Query: 369  YGFGLVVRDSNGDLIEAKTYLLNGQVAPELAEAMTVKEALSWIKQQQWQHVILETYC*VV 190
               G V RD  G  +         Q  P++ EA+ V+E LSWI ++    +++ET C  V
Sbjct: 686  -AIGAVFRDHQGRFMGGFAKPFPHQTLPKVVEALGVREVLSWIHERSRSRIVVETDCLRV 744

Query: 189  VQGVRSRVKMRSQFGIVVEECRQLIKHQNKIDLYFIRRFANMVAHNFARVAYKY 28
            VQ ++ +    + FG ++ +C  +++H   + + + RR AN  AH  A  A  +
Sbjct: 745  VQAIQHKSCPNTSFGFIIVDCLDVLQHLVDVQVVYARRSANSAAHCLANGACSF 798



 Score = 83.2 bits (204), Expect(2) = 7e-44
 Identities = 43/104 (41%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
 Frame = -1

Query: 1033 EDNVYWSRELTGIYTVKSAYNIL----QEQKGQWRNTQQEEVWAKMWKIKAPPKVLNHLW 866
            ED + WS +  G YT +S Y  L    Q       +     VWA++WK+ APPK+LN  W
Sbjct: 466  EDQISWSFDARGEYTARSGYGALRCFRQSTALVASDVDSNFVWAQLWKVTAPPKILNFAW 525

Query: 865  RALSQCLPTLSQLQQKHVAISPLCPIFLGAAETIVHALVNCPIA 734
            RA   CLPT   L  +HV     CPI     ET +HALV C  A
Sbjct: 526  RAARNCLPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAA 569


>ref|XP_002518871.1| conserved hypothetical protein [Ricinus communis]
            gi|223541858|gb|EEF43404.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 668

 Score = 87.8 bits (216), Expect(2) = 3e-32
 Identities = 52/172 (30%), Positives = 80/172 (46%)
 Frame = -2

Query: 723  WNILMPEIKVGDESNFMEWFIHMLARCNNAKRAEVATLCWSIWKSRNEKVWN*KITPVNR 544
            W++L        ES    W  +     +    A++A +C S+W  RN  VWN +      
Sbjct: 493  WDLLGFRFSFPTESPICSWIQNFFIDNHEDTCAKMALVCGSLWNQRNHWVWNKQSNTTYG 552

Query: 543  IVAMAKEYLTQWRYAQDRVYNALSQPMMVGDGAYAWVRPQTDTVKVTTDAAIFSDRGEYG 364
            +++ A + L Q   AQ              D    W +P+   +K+ TD A+F  +G  G
Sbjct: 553  VISPANQLLEQRTRAQSADEEIAPPLGHNTDVTRKWTKPELGWLKINTDTALFLKQGRIG 612

Query: 363  FGLVVRDSNGDLIEAKTYLLNGQVAPELAEAMTVKEALSWIKQQQWQHVILE 208
             G VVRDSNG +I A++    G+     AEA+++KEALS++K  Q      E
Sbjct: 613  LGCVVRDSNGRMIMARSERRVGRFTAREAEALSMKEALSYMKDYQMDKCFFE 664



 Score = 78.2 bits (191), Expect(2) = 3e-32
 Identities = 38/110 (34%), Positives = 57/110 (51%)
 Frame = -1

Query: 1033 EDNVYWSRELTGIYTVKSAYNILQEQKGQWRNTQQEEVWAKMWKIKAPPKVLNHLWRALS 854
            ED+ YW  +  G Y VK+ Y +LQ   G+     +   W K WK+K P KV N +W+  S
Sbjct: 394  EDSWYWLFDDKGNYLVKNCYRLLQGDLGR----PETSFWNKFWKLKIPTKVRNLMWKICS 449

Query: 853  QCLPTLSQLQQKHVAISPLCPIFLGAAETIVHALVNCPIAVQCLEYINAR 704
             C+ T   L+ ++V + PLC       ET+ H L  C +A +C + +  R
Sbjct: 450  NCIRTAMNLRMRYVDLDPLCKWCNREPETLFHVLFGCSMARECWDLLGFR 499


>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223538337|gb|EEF39944.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 483

 Score =  100 bits (248), Expect(2) = 3e-32
 Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 1/215 (0%)
 Frame = -2

Query: 684 SNFMEWFIHMLARCNNAKRAEVATLCWSIWKSRNEKVWN*KITPVNRIVAMAKEYLTQWR 505
           SN +E    +    +++  A    L WS+W + N+ VWN K      + + A  +L QW 
Sbjct: 262 SNLLEGARSVFEHFDDSIVASFVVLWWSLWTNMNDVVWNGKKLSWRAVASRASSFLFQWG 321

Query: 504 YAQDRV-YNALSQPMMVGDGAYAWVRPQTDTVKVTTDAAIFSDRGEYGFGLVVRDSNGDL 328
            A+    Y+ L +    GD    W +P T   K+  DA+  ++RG+ G   V+RD+ G  
Sbjct: 322 KARKLTDYHQLGRHFAGGD--CLWQKPATGKYKLNVDASSSAERGKSGASFVLRDNAGIW 379

Query: 327 IEAKTYLLNGQVAPELAEAMTVKEALSWIKQQQWQHVILETYC*VVVQGVRSRVKMRSQF 148
           I     +      P++AEA  +KEALSWI  +  + V +ET C   ++ +   +   S  
Sbjct: 380 ITGVLIIRPYIANPDVAEAWALKEALSWIHAKGMEEVQIETDCLRNIELLEEELHPNSYL 439

Query: 147 GIVVEECRQLIKHQNKIDLYFIRRFANMVAHNFAR 43
             ++++C+ L++  N+ +L F+   AN VAH  ++
Sbjct: 440 LCLLKDCQDLLRVLNRCNLVFVYGSANTVAHMISK 474



 Score = 65.9 bits (159), Expect(2) = 3e-32
 Identities = 33/111 (29%), Positives = 53/111 (47%)
 Frame = -1

Query: 1042 TCEEDNVYWSRELTGIYTVKSAYNILQEQKGQWRNTQQEEVWAKMWKIKAPPKVLNHLWR 863
            T   D ++W ++  G ++VK  Y + Q+            VW ++WK+    K    +WR
Sbjct: 144  TVGTDQLFWFKDPKGKFSVKDVYRV-QQPDFSVLYPSNVVVWRRLWKLNIAAKCKVFMWR 202

Query: 862  ALSQCLPTLSQLQQKHVAISPLCPIFLGAAETIVHALVNCPIAVQCLEYIN 710
            AL+  LP  + L  + V     CP  +   ETI+H LV C +  Q  +Y+N
Sbjct: 203  ALTNRLPVRTNLVMRKVTEDSSCPCCVSQPETIMHILVLCDVTTQSWKYVN 253


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score = 92.4 bits (228), Expect(2) = 2e-31
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 5/221 (2%)
 Frame = -2

Query: 684  SNFMEWFIHMLARCNNAKRAEVATLCWSIWKSRNEKVWN*KITPVNRIVAMAKEYLTQWR 505
            S   +W    L R ++     +A   W IW++RN    N       R+V     Y+    
Sbjct: 1144 STMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYV---- 1199

Query: 504  YAQDRV--YNALSQPMMVGDGAYA---WVRPQTDTVKVTTDAAIFSDRGEYGFGLVVRDS 340
               D +  +N  +     G    A   W  P      + +DAAIFS     G G ++RD+
Sbjct: 1200 ---DMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDN 1256

Query: 339  NGDLIEAKTYLLNGQVAPELAEAMTVKEALSWIKQQQWQHVILETYC*VVVQGVRSRVKM 160
             G  + A + +++  V PELAEA+ ++ AL   K++  +H+++ + C  V++ +++  + 
Sbjct: 1257 TGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRD 1316

Query: 159  RSQFGIVVEECRQLIKHQNKIDLYFIRRFANMVAHNFARVA 37
            RS  G V+E+ ++L           + R +N+ AH+ AR A
Sbjct: 1317 RSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLARNA 1357



 Score = 70.9 bits (172), Expect(2) = 2e-31
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
 Frame = -1

Query: 1036 EEDNVYWSRELTGIYTVKSAYNIL--------QEQKGQW---RNTQQEEVWAKMWKIKAP 890
            + D   W  +  G+Y+V+SAYN+         Q   G+    R  + ++ W  +WKI AP
Sbjct: 1013 DADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAP 1072

Query: 889  PKVLNHLWRALSQCLPTLSQLQQKHVAISPLCPIFLGAAETIVHALVNCPIAVQCLEYIN 710
             K+   LWRA  +CL T  QL+++H+  +  C +F    +T+ H  + CP A Q  E I 
Sbjct: 1073 GKMKITLWRAAHECLATGFQLRRRHIPSTDGC-VFCNRDDTVEHVFLFCPFAAQIWEEIK 1131

Query: 709  AR 704
             +
Sbjct: 1132 GK 1133


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
            protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score = 92.4 bits (228), Expect(2) = 2e-31
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 5/221 (2%)
 Frame = -2

Query: 684  SNFMEWFIHMLARCNNAKRAEVATLCWSIWKSRNEKVWN*KITPVNRIVAMAKEYLTQWR 505
            S   +W    L R ++     +A   W IW++RN    N       R+V     Y+    
Sbjct: 1101 STMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYV---- 1156

Query: 504  YAQDRV--YNALSQPMMVGDGAYA---WVRPQTDTVKVTTDAAIFSDRGEYGFGLVVRDS 340
               D +  +N  +     G    A   W  P      + +DAAIFS     G G ++RD+
Sbjct: 1157 ---DMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDN 1213

Query: 339  NGDLIEAKTYLLNGQVAPELAEAMTVKEALSWIKQQQWQHVILETYC*VVVQGVRSRVKM 160
             G  + A + +++  V PELAEA+ ++ AL   K++  +H+++ + C  V++ +++  + 
Sbjct: 1214 TGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRD 1273

Query: 159  RSQFGIVVEECRQLIKHQNKIDLYFIRRFANMVAHNFARVA 37
            RS  G V+E+ ++L           + R +N+ AH+ AR A
Sbjct: 1274 RSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLARNA 1314



 Score = 70.9 bits (172), Expect(2) = 2e-31
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
 Frame = -1

Query: 1036 EEDNVYWSRELTGIYTVKSAYNIL--------QEQKGQW---RNTQQEEVWAKMWKIKAP 890
            + D   W  +  G+Y+V+SAYN+         Q   G+    R  + ++ W  +WKI AP
Sbjct: 970  DADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAP 1029

Query: 889  PKVLNHLWRALSQCLPTLSQLQQKHVAISPLCPIFLGAAETIVHALVNCPIAVQCLEYIN 710
             K+   LWRA  +CL T  QL+++H+  +  C +F    +T+ H  + CP A Q  E I 
Sbjct: 1030 GKMKITLWRAAHECLATGFQLRRRHIPSTDGC-VFCNRDDTVEHVFLFCPFAAQIWEEIK 1088

Query: 709  AR 704
             +
Sbjct: 1089 GK 1090