BLASTX nr result

ID: Bupleurum21_contig00020161 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00020161
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]             152   2e-35
ref|XP_002514810.1| ATP binding protein, putative [Ricinus commu...   144   7e-33
ref|XP_002312197.1| dicer-like protein [Populus trichocarpa] gi|...   144   7e-33
emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]   142   4e-32
ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-...   139   2e-31

>gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]
          Length = 1403

 Score =  152 bits (385), Expect = 2e-35
 Identities = 74/110 (67%), Positives = 90/110 (81%), Gaps = 1/110 (0%)
 Frame = -1

Query: 332 SGDSSTLARINNHIASGGIMREESLHHAAETCQPLDSELYDELFYQVASTGAIVTLSSSV 153
           SGD+STL R+ N++ SG IMR+ESL HA+  C PLD EL+DE +Y+V +TGA+VTLSSSV
Sbjct: 501 SGDASTLTRMQNYMQSGEIMRQESLRHASIPCSPLDDELHDEPYYKVETTGAVVTLSSSV 560

Query: 152 SLIYFYCSRLPSDGYFKPFPRFIIDKELQTCTLYLPKSCLLPSV-SVHGN 6
           SL+YFYCSRLPSDGY+KP PR  I+KE +TCTLYLPK+C L  V SV GN
Sbjct: 561 SLLYFYCSRLPSDGYYKPSPRCAIEKETETCTLYLPKNCPLQKVISVKGN 610


>ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
           gi|223545861|gb|EEF47364.1| ATP binding protein,
           putative [Ricinus communis]
          Length = 1388

 Score =  144 bits (363), Expect = 7e-33
 Identities = 67/110 (60%), Positives = 87/110 (79%)
 Frame = -1

Query: 332 SGDSSTLARINNHIASGGIMREESLHHAAETCQPLDSELYDELFYQVASTGAIVTLSSSV 153
           SGD ST +R+ N++ASG +MR+ES+ H +  C P+ SE ++  +Y V ST A+VTL+SSV
Sbjct: 490 SGDVSTHSRLENYLASGDLMRKESIRHGSVPCSPIRSEFHEGEYYFVESTNALVTLTSSV 549

Query: 152 SLIYFYCSRLPSDGYFKPFPRFIIDKELQTCTLYLPKSCLLPSVSVHGNV 3
           SLIYFYCSRLPSDGYFKP PR +IDKE++ CTL LPKSC + ++SV GNV
Sbjct: 550 SLIYFYCSRLPSDGYFKPTPRCLIDKEMERCTLLLPKSCSIHTISVEGNV 599


>ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
           gi|222852017|gb|EEE89564.1| dicer-like protein [Populus
           trichocarpa]
          Length = 1468

 Score =  144 bits (363), Expect = 7e-33
 Identities = 73/109 (66%), Positives = 85/109 (77%)
 Frame = -1

Query: 329 GDSSTLARINNHIASGGIMREESLHHAAETCQPLDSELYDELFYQVASTGAIVTLSSSVS 150
           GD ST AR+ N++ASG IMR ESL HA+  C PL  EL DE FY+V  TGA+V+LSSSVS
Sbjct: 554 GDFSTHARLENYLASGDIMRRESLRHASIPCSPLLDELDDE-FYRVEGTGAVVSLSSSVS 612

Query: 149 LIYFYCSRLPSDGYFKPFPRFIIDKELQTCTLYLPKSCLLPSVSVHGNV 3
           LIYFYCSRLPSDGYFKP PR IIDKE  TCTL+LPKS  + ++ V GN+
Sbjct: 613 LIYFYCSRLPSDGYFKPAPRCIIDKETMTCTLHLPKSSPVQTICVQGNI 661


>emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
          Length = 1296

 Score =  142 bits (357), Expect = 4e-32
 Identities = 68/110 (61%), Positives = 85/110 (77%)
 Frame = -1

Query: 332 SGDSSTLARINNHIASGGIMREESLHHAAETCQPLDSELYDELFYQVASTGAIVTLSSSV 153
           SGD  TL+R+  ++ SG +MREESL +A+  C PL S L DE FY V ST AIVTLSSS+
Sbjct: 405 SGDDKTLSRLRTYLDSGKVMREESLRNASLPCAPLKSSLDDEEFYWVESTRAIVTLSSSI 464

Query: 152 SLIYFYCSRLPSDGYFKPFPRFIIDKELQTCTLYLPKSCLLPSVSVHGNV 3
            L+YFYCSRLPSDGYFKP PR  I++++ TCT+YLPKSC + +VSV GN+
Sbjct: 465 GLLYFYCSRLPSDGYFKPTPRCSINQDMGTCTIYLPKSCPIQTVSVRGNI 514


>ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera]
          Length = 1394

 Score =  139 bits (350), Expect = 2e-31
 Identities = 67/110 (60%), Positives = 84/110 (76%)
 Frame = -1

Query: 332 SGDSSTLARINNHIASGGIMREESLHHAAETCQPLDSELYDELFYQVASTGAIVTLSSSV 153
           SGD  TL+R+  ++ SG +MREESL +A+  C PL S L DE FY V ST AIVTLSSS+
Sbjct: 503 SGDDKTLSRLRTYLDSGKVMREESLRNASLPCAPLKSSLDDEEFYWVESTRAIVTLSSSI 562

Query: 152 SLIYFYCSRLPSDGYFKPFPRFIIDKELQTCTLYLPKSCLLPSVSVHGNV 3
            L+YFYCSRLPSDGYFKP PR  I++++ TCT+Y PKSC + +VSV GN+
Sbjct: 563 GLLYFYCSRLPSDGYFKPTPRCSINQDMGTCTIYHPKSCPIQTVSVRGNI 612


Top