BLASTX nr result

ID: Bupleurum21_contig00019543 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00019543
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|1Q53|A Chain A, Solution Structure Of Hypothetical Arabidops...    69   5e-10
pdb|1Q4R|A Chain A, Gene Product Of At3g17210 From Arabidopsis T...    69   5e-10
ref|NP_566569.1| putative protein Pop3 [Arabidopsis thaliana] gi...    69   5e-10
ref|XP_004165714.1| PREDICTED: probable protein Pop3-like [Cucum...    68   9e-10
ref|XP_004147622.1| PREDICTED: LOW QUALITY PROTEIN: probable pro...    68   9e-10

>pdb|1Q53|A Chain A, Solution Structure Of Hypothetical Arabidopsis Thaliana
           Protein At3g17210. Center For Eukaryotic Structural
           Genomics Target 13081 gi|159162872|pdb|1Q53|B Chain B,
           Solution Structure Of Hypothetical Arabidopsis Thaliana
           Protein At3g17210. Center For Eukaryotic Structural
           Genomics Target 13081
          Length = 112

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 28/45 (62%), Positives = 39/45 (86%)
 Frame = -1

Query: 320 VFESTFDNMEGVAEYIKHPAHVEFSLLFLANVDKLICVDYKPTAV 186
           +FESTF++ E VAEYI HPAHVEF+ +FL ++DK++ +DYKPT+V
Sbjct: 66  IFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSV 110


>pdb|1Q4R|A Chain A, Gene Product Of At3g17210 From Arabidopsis Thaliana
           gi|150261453|pdb|2Q3P|A Chain A, Ensemble Refinement Of
           The Protein Crystal Structure Of At3g17210 From
           Arabidopsis Thaliana
          Length = 112

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 28/45 (62%), Positives = 39/45 (86%)
 Frame = -1

Query: 320 VFESTFDNMEGVAEYIKHPAHVEFSLLFLANVDKLICVDYKPTAV 186
           +FESTF++ E VAEYI HPAHVEF+ +FL ++DK++ +DYKPT+V
Sbjct: 66  IFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSV 110


>ref|NP_566569.1| putative protein Pop3 [Arabidopsis thaliana]
           gi|51316534|sp|Q9LUV2.1|POP3_ARATH RecName:
           Full=Probable protein Pop3
           gi|13877523|gb|AAK43839.1|AF370462_1 Unknown protein
           [Arabidopsis thaliana] gi|11994536|dbj|BAB02723.1|
           unnamed protein product [Arabidopsis thaliana]
           gi|17978771|gb|AAL47379.1| unknown protein [Arabidopsis
           thaliana] gi|110741422|dbj|BAF02259.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332642400|gb|AEE75921.1| putative protein Pop3
           [Arabidopsis thaliana]
          Length = 109

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 28/45 (62%), Positives = 39/45 (86%)
 Frame = -1

Query: 320 VFESTFDNMEGVAEYIKHPAHVEFSLLFLANVDKLICVDYKPTAV 186
           +FESTF++ E VAEYI HPAHVEF+ +FL ++DK++ +DYKPT+V
Sbjct: 63  IFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSV 107


>ref|XP_004165714.1| PREDICTED: probable protein Pop3-like [Cucumis sativus]
          Length = 109

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 28/45 (62%), Positives = 39/45 (86%)
 Frame = -1

Query: 320 VFESTFDNMEGVAEYIKHPAHVEFSLLFLANVDKLICVDYKPTAV 186
           VFESTF++ +G+AEYI HPAHVEF+  FL+++DK+I +DYKPT +
Sbjct: 63  VFESTFESTQGIAEYISHPAHVEFANKFLSSLDKVIVIDYKPTLI 107


>ref|XP_004147622.1| PREDICTED: LOW QUALITY PROTEIN: probable protein Pop3-like [Cucumis
           sativus]
          Length = 112

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 28/45 (62%), Positives = 39/45 (86%)
 Frame = -1

Query: 320 VFESTFDNMEGVAEYIKHPAHVEFSLLFLANVDKLICVDYKPTAV 186
           VFESTF++ +G+AEYI HPAHVEF+  FL+++DK+I +DYKPT +
Sbjct: 66  VFESTFESTQGIAEYISHPAHVEFANKFLSSLDKVIVIDYKPTLI 110


Top