BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00019541
         (683 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   200   2e-49
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   189   3e-46
ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   173   2e-41
ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   173   2e-41
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]              173   3e-41

>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  200 bits (509), Expect = 2e-49
 Identities = 105/190 (55%), Positives = 133/190 (70%), Gaps = 1/190 (0%)
 Frame = +1

Query: 115 MGVQERPTLTVKFSNIPRTAVAKDLVDFFESRIGKDSVFACEIFSVHKDWNARDSGRVQF 294
           MGV++R T TV+ SNIP+TA+AK L DFFES IGK SVFAC+IFS HK+W +R  GRVQF
Sbjct: 1   MGVEKRVTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQF 60

Query: 295 ETLEFKSTALSLYNQGKLVFKNHNISLSSSFDDIITRPVDAFNRVENGVLNVGIIKSSNE 474
           ET + K  +LSL  QGKLVFK H + L+SSFDDII RP++   R + G+L+ GI+     
Sbjct: 61  ETSQSKLQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILL---- 116

Query: 475 GESHCMCVLETWDNVRAWIMPERMCCEFWL-NCNGVTYKLEVQFGDVLEVSNCCLNGGTE 651
            E+  M VLETW+NV+  IMPER   EFW+ +  G  Y+LEVQFGD++E   C L    E
Sbjct: 117 -ENDYMEVLETWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLE--DE 173

Query: 652 PNAILLNLKY 681
             A+LL LK+
Sbjct: 174 KTALLLKLKH 183


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
           gi|297733815|emb|CBI15062.3| unnamed protein product
           [Vitis vinifera]
          Length = 1127

 Score =  189 bits (481), Expect = 3e-46
 Identities = 100/189 (52%), Positives = 134/189 (70%)
 Frame = +1

Query: 115 MGVQERPTLTVKFSNIPRTAVAKDLVDFFESRIGKDSVFACEIFSVHKDWNARDSGRVQF 294
           M V ERPT  VK SNIP+TA+AK+L  F ES++G ++++A EI + HK+W +R  GRVQF
Sbjct: 1   MAVGERPT--VKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQF 58

Query: 295 ETLEFKSTALSLYNQGKLVFKNHNISLSSSFDDIITRPVDAFNRVENGVLNVGIIKSSNE 474
           ETL+ K  A  L  QG LVF+  ++S+S++FDDII RPV+  N+V++GVL+VG +     
Sbjct: 59  ETLQAKRAADLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLV---- 114

Query: 475 GESHCMCVLETWDNVRAWIMPERMCCEFWLNCNGVTYKLEVQFGDVLEVSNCCLNGGTEP 654
            E  CM VLE+W+ V+  +MPER   EFW++ +G  YKLEV F DVLE S CCL GG + 
Sbjct: 115 -EDDCMLVLESWEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGG-KV 172

Query: 655 NAILLNLKY 681
           NA+LL LKY
Sbjct: 173 NALLLKLKY 181


>ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
          Length = 1117

 Score =  173 bits (439), Expect = 2e-41
 Identities = 96/189 (50%), Positives = 122/189 (64%)
 Frame = +1

Query: 115 MGVQERPTLTVKFSNIPRTAVAKDLVDFFESRIGKDSVFACEIFSVHKDWNARDSGRVQF 294
           M   ER TL V  SN+P +A+A+DL++F  S++G DSVFA EIF+  K+W +R SGRVQF
Sbjct: 1   MAQPERSTLRV--SNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQF 58

Query: 295 ETLEFKSTALSLYNQGKLVFKNHNISLSSSFDDIITRPVDAFNRVENGVLNVGIIKSSNE 474
            TLE K+ A+SL  Q  LVF   N+  S   DDI+ RPV A NR ENGVL+VG +     
Sbjct: 59  TTLEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEER 118

Query: 475 GESHCMCVLETWDNVRAWIMPERMCCEFWLNCNGVTYKLEVQFGDVLEVSNCCLNGGTEP 654
                M VLE+W+ V+AWIMPER   EFW+      YKLEV F ++LE +  CL G  + 
Sbjct: 119 -----MSVLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCL-GEEKL 172

Query: 655 NAILLNLKY 681
           NA+LL LKY
Sbjct: 173 NALLLKLKY 181


>ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
           gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
           2 [Cucumis sativus]
          Length = 1117

 Score =  173 bits (439), Expect = 2e-41
 Identities = 96/189 (50%), Positives = 122/189 (64%)
 Frame = +1

Query: 115 MGVQERPTLTVKFSNIPRTAVAKDLVDFFESRIGKDSVFACEIFSVHKDWNARDSGRVQF 294
           M   ER TL V  SN+P +A+A+DL++F  S++G DSVFA EIF+  K+W +R SGRVQF
Sbjct: 1   MAQPERSTLRV--SNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQF 58

Query: 295 ETLEFKSTALSLYNQGKLVFKNHNISLSSSFDDIITRPVDAFNRVENGVLNVGIIKSSNE 474
            TLE K+ A+SL  Q  LVF   N+  S   DDI+ RPV A NR ENGVL+VG +     
Sbjct: 59  TTLEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEER 118

Query: 475 GESHCMCVLETWDNVRAWIMPERMCCEFWLNCNGVTYKLEVQFGDVLEVSNCCLNGGTEP 654
                M VLE+W+ V+AWIMPER   EFW+      YKLEV F ++LE +  CL G  + 
Sbjct: 119 -----MSVLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCL-GEEKL 172

Query: 655 NAILLNLKY 681
           NA+LL LKY
Sbjct: 173 NALLLKLKY 181


>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  173 bits (438), Expect = 3e-41
 Identities = 89/185 (48%), Positives = 124/185 (67%)
 Frame = +1

Query: 127 ERPTLTVKFSNIPRTAVAKDLVDFFESRIGKDSVFACEIFSVHKDWNARDSGRVQFETLE 306
           ERPTL  + ++IP+TAVAKDL+DFFES++G DSVFA EI +   +W +R  GRVQF   +
Sbjct: 7   ERPTL--RLTHIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQ 64

Query: 307 FKSTALSLYNQGKLVFKNHNISLSSSFDDIITRPVDAFNRVENGVLNVGIIKSSNEGESH 486
            KS AL L     L+FK+H++ LS ++DDII RP+ A +R++ GVL+ G + S +     
Sbjct: 65  AKSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDD----- 119

Query: 487 CMCVLETWDNVRAWIMPERMCCEFWLNCNGVTYKLEVQFGDVLEVSNCCLNGGTEPNAIL 666
           C+ VLE W+ VR WIMPER   EFW+  +G  YKL+  F D+ E   CC + G+  NA+L
Sbjct: 120 CLRVLERWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFD-GSACNALL 178

Query: 667 LNLKY 681
           L ++Y
Sbjct: 179 LRVRY 183